Wall clock time and date at job start Tue Mar 31 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34339 * 125.48789 * 2 1 4 4 C 1.46775 * 106.02489 * 180.02562 * 3 2 1 5 5 C 1.48186 * 127.12792 * 179.97438 * 4 3 2 6 6 C 1.36677 * 120.33466 * 64.74786 * 5 4 3 7 7 C 1.41108 * 120.58465 * 179.79099 * 6 5 4 8 8 C 1.41206 * 119.48595 * 180.26772 * 7 6 5 9 9 H 1.08003 * 120.00224 * 333.46705 * 8 7 6 10 10 C 1.39907 * 120.00374 * 153.47872 * 8 7 6 11 11 N 1.30856 * 119.99424 * 342.89941 * 10 8 7 12 12 Si 1.86798 * 120.00325 * 162.90055 * 10 8 7 13 13 H 1.48494 * 109.47054 * 59.99950 * 12 10 8 14 14 H 1.48505 * 109.47005 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47337 * 299.99643 * 12 10 8 16 16 C 1.39984 * 121.02093 * 0.44428 * 7 6 5 17 17 C 1.39889 * 120.11345 * 359.81942 * 16 7 6 18 18 C 1.40858 * 121.14745 * 179.97438 * 17 16 7 19 19 C 1.36200 * 119.60357 * 180.02562 * 18 17 16 20 20 C 1.39233 * 120.94804 * 359.97438 * 19 18 17 21 21 C 1.36560 * 120.97528 * 0.02800 * 20 19 18 22 22 C 1.39793 * 119.73485 * 359.94988 * 21 20 19 23 23 C 1.35955 * 105.74376 * 0.22545 * 4 3 2 24 24 C 1.50696 * 125.78297 * 179.75525 * 23 4 3 25 25 O 1.34072 * 108.43597 * 359.63476 * 23 4 3 26 26 H 1.09004 * 109.47009 * 90.00107 * 1 2 3 27 27 H 1.08997 * 109.47170 * 210.00043 * 1 2 3 28 28 H 1.09002 * 109.47472 * 330.00317 * 1 2 3 29 29 H 1.07998 * 126.98642 * 359.97438 * 3 2 1 30 30 H 1.07989 * 119.70994 * 359.97438 * 6 5 4 31 31 H 0.96998 * 119.99409 * 180.02562 * 11 10 8 32 32 H 1.08001 * 119.94386 * 179.79539 * 16 7 6 33 33 H 1.07997 * 120.20208 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.52865 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.51852 * 179.97438 * 20 19 18 36 36 H 1.08000 * 120.13107 * 179.97438 * 21 20 19 37 37 H 1.09004 * 109.47010 * 89.99734 * 24 23 4 38 38 H 1.09000 * 109.47376 * 209.99644 * 24 23 4 39 39 H 1.08996 * 109.46853 * 330.00058 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2869 1.0938 0.0000 4 6 3.6708 0.6048 -0.0006 5 6 4.9078 1.4207 -0.0014 6 6 5.2074 2.2211 1.0652 7 6 6.3861 2.9969 1.0720 8 6 6.6757 3.8113 2.1885 9 1 5.8732 4.1837 2.8080 10 6 8.0022 4.1361 2.4923 11 7 8.9814 3.4403 1.9732 12 14 8.3756 5.5627 3.6388 13 1 7.7562 5.3078 4.9641 14 1 9.8458 5.6982 3.7980 15 1 7.8216 6.8160 3.0663 16 6 7.2708 2.9743 -0.0127 17 6 6.9966 2.1721 -1.1254 18 6 7.8714 2.1333 -2.2288 19 6 7.5733 1.3414 -3.2961 20 6 6.4156 0.5681 -3.3128 21 6 5.5459 0.5820 -2.2601 22 6 5.8180 1.3820 -1.1464 23 6 3.5826 -0.7519 -0.0061 24 6 4.7453 -1.7105 -0.0140 25 8 2.2858 -1.0925 -0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.9617 2.1237 -0.0004 30 1 4.5378 2.2578 1.9116 31 1 9.9011 3.6652 2.1841 32 1 8.1663 3.5776 0.0095 33 1 8.7729 2.7278 -2.2286 34 1 8.2446 1.3129 -4.1416 35 1 6.2017 -0.0512 -4.1713 36 1 4.6516 -0.0229 -2.2876 37 1 5.0291 -1.9459 1.0118 38 1 4.4579 -2.6261 -0.5307 39 1 5.5900 -1.2526 -0.5287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242408490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:28 Heat of formation + Delta-G solvation = 21.130408 kcal Electronic energy + Delta-G solvation = -22315.509757 eV Core-core repulsion = 19152.860338 eV Total energy + Delta-G solvation = -3162.649420 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.34325 -40.47350 -37.44412 -35.73924 -34.20136 -33.87976 -32.06155 -31.26138 -30.57701 -29.43008 -27.12851 -25.62515 -24.00947 -23.18031 -22.98468 -21.81391 -20.35028 -18.94632 -17.81106 -17.63666 -17.22784 -17.08386 -16.62702 -16.04839 -15.31775 -14.93882 -14.75080 -14.59896 -14.23144 -14.13346 -13.93973 -13.84624 -13.73342 -13.55982 -13.40581 -13.27121 -13.08359 -12.84993 -12.66108 -12.54006 -12.44784 -12.08035 -11.72677 -11.43710 -11.31248 -10.92075 -10.56069 -10.20452 -9.25466 -9.17471 -8.67414 -8.41070 -6.31854 -0.01476 0.58529 0.78959 1.33237 1.36052 1.40096 1.48582 1.69656 1.94902 2.17094 2.30804 3.02679 3.64387 3.72301 3.91709 4.12260 4.14335 4.24759 4.32678 4.40579 4.49848 4.59968 4.63829 4.72964 4.75104 4.75958 4.80585 4.90186 4.96735 4.99265 5.07992 5.17081 5.18136 5.32895 5.41459 5.52784 5.61949 5.70528 5.73203 5.85761 5.98573 6.06907 6.25235 6.27042 6.43668 6.64878 6.86442 6.94227 8.29536 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.005426 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.039759 B = 5159.485905 C = 6606.094092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.010 4.010 3 C -0.222 4.222 4 C -0.150 4.150 5 C -0.006 4.006 6 C -0.154 4.154 7 C 0.079 3.921 8 C -0.489 4.489 9 H 0.078 0.922 10 C 0.035 3.965 11 N -0.816 5.816 12 Si 0.982 3.018 13 H -0.258 1.258 14 H -0.267 1.267 15 H -0.261 1.261 16 C -0.233 4.233 17 C -0.021 4.021 18 C -0.160 4.160 19 C -0.105 4.105 20 C -0.178 4.178 21 C -0.080 4.080 22 C -0.135 4.135 23 C -0.007 4.007 24 C -0.072 4.072 25 O -0.185 6.185 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.152 0.848 30 H 0.099 0.901 31 H 0.289 0.711 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.532 -6.582 -4.790 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.059 4.059 3 C -0.242 4.242 4 C -0.151 4.151 5 C -0.006 4.006 6 C -0.173 4.173 7 C 0.077 3.923 8 C -0.518 4.518 9 H 0.096 0.904 10 C -0.181 4.181 11 N -0.440 5.440 12 Si 0.802 3.198 13 H -0.182 1.182 14 H -0.191 1.191 15 H -0.185 1.185 16 C -0.253 4.253 17 C -0.021 4.021 18 C -0.178 4.178 19 C -0.123 4.123 20 C -0.196 4.196 21 C -0.098 4.098 22 C -0.136 4.136 23 C -0.056 4.056 24 C -0.128 4.128 25 O -0.084 6.084 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.121 0.879 29 H 0.170 0.830 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.383 -6.908 -4.769 12.590 hybrid contribution 0.705 1.152 0.839 1.590 sum -8.678 -5.756 -3.930 11.131 Atomic orbital electron populations 1.20490 0.81618 1.05315 1.04880 1.22933 0.95428 0.83010 1.04502 1.22760 0.90872 1.00097 1.10423 1.20085 0.92971 0.92648 1.09380 1.18721 0.91912 0.96526 0.93440 1.21140 0.99010 0.99354 0.97810 1.17692 0.91134 0.90658 0.92820 1.19850 0.93688 1.27815 1.10414 0.90374 1.26752 0.95280 0.98370 0.97693 1.69909 1.01407 1.34827 1.37904 0.85256 0.78130 0.77953 0.78437 1.18212 1.19083 1.18515 1.21052 1.03712 1.06761 0.93767 1.18215 0.93769 0.95463 0.94680 1.21071 0.99567 1.02499 0.94663 1.20922 0.97531 0.96008 0.97804 1.20847 0.95978 1.03235 0.99546 1.20819 0.98860 0.97268 0.92816 1.18795 0.95914 1.03071 0.95784 1.22718 0.83249 0.94017 1.05654 1.20418 0.91056 0.97242 1.04088 1.83707 1.16071 1.35631 1.72951 0.88496 0.89237 0.87945 0.83041 0.88252 0.90046 0.88213 0.87025 0.84230 0.84204 0.86493 0.89797 0.88091 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.41 71.24 0.74 -0.37 16 2 C -0.01 -0.28 7.29 24.79 0.18 -0.10 16 3 C -0.22 -7.53 11.03 23.61 0.26 -7.27 16 4 C -0.15 -5.87 4.87 -18.93 -0.09 -5.96 16 5 C -0.01 -0.26 5.56 -18.89 -0.10 -0.37 16 6 C -0.15 -7.85 9.36 22.61 0.21 -7.64 16 7 C 0.08 4.40 5.54 -21.42 -0.12 4.28 16 8 C -0.49 -26.65 8.99 23.40 0.21 -26.44 16 9 H 0.08 4.07 7.90 -2.91 -0.02 4.04 16 10 C 0.03 1.77 5.10 85.24 0.43 2.21 16 11 N -0.82 -43.34 11.01 21.82 0.24 -43.10 16 12 Si 0.98 38.39 29.59 68.60 2.03 40.42 16 13 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 14 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 15 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 16 C -0.23 -12.84 8.38 23.09 0.19 -12.64 16 17 C -0.02 -1.05 5.74 -21.33 -0.12 -1.17 16 18 C -0.16 -6.84 9.78 22.44 0.22 -6.62 16 19 C -0.10 -3.70 9.95 22.03 0.22 -3.48 16 20 C -0.18 -6.04 9.96 22.12 0.22 -5.82 16 21 C -0.08 -3.07 7.89 22.25 0.18 -2.90 16 22 C -0.13 -6.22 5.49 -19.89 -0.11 -6.33 16 23 C -0.01 -0.24 6.50 25.15 0.16 -0.08 16 24 C -0.07 -2.09 10.01 71.23 0.71 -1.38 16 25 O -0.18 -5.77 10.55 0.99 0.01 -5.76 16 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.15 4.80 8.06 -2.91 -0.02 4.77 16 30 H 0.10 4.85 8.06 -2.92 -0.02 4.83 16 31 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 32 H 0.10 5.77 6.19 -2.91 -0.02 5.75 16 33 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 34 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 35 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.12 4.16 6.46 -2.91 -0.02 4.14 16 37 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 2.61 5.98 -2.39 -0.01 2.60 16 Total: -1.00 -65.03 330.15 6.74 -58.29 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 1.06 Total: 32.23 kcal Atomic # 6 Polarization: -85.47 SS G_CDS: 3.40 Total: -82.07 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.24 Total: -43.10 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: 0.01 Total: -5.76 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -65.03 6.74 -58.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242408490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.416 kcal (2) G-P(sol) polarization free energy of solvation -65.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds