Wall clock time and date at job start Tue Mar 31 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39757 * 125.83890 * 2 1 4 4 C 1.36108 * 107.82685 * 180.02562 * 3 2 1 5 5 N 1.39480 * 126.21324 * 180.02562 * 4 3 2 6 6 C 1.34767 * 120.00065 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00207 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00006 * 180.02562 * 6 5 4 9 9 H 1.08999 * 115.56431 * 62.38331 * 8 6 5 10 10 C 1.53002 * 117.49740 * 208.07484 * 8 6 5 11 11 C 1.52997 * 60.00058 * 107.48422 * 10 8 6 12 12 H 1.08999 * 117.52080 * 107.47617 * 11 10 8 13 13 C 1.50702 * 117.50031 * 252.51176 * 11 10 8 14 14 N 1.34771 * 120.00027 * 152.42309 * 13 11 10 15 15 O 1.21281 * 120.00131 * 332.13948 * 13 11 10 16 16 N 1.35256 * 107.56934 * 0.25777 * 4 3 2 17 17 C 1.46503 * 126.04730 * 179.73977 * 16 4 3 18 18 C 1.50705 * 109.46728 * 90.00158 * 17 16 4 19 19 H 1.08001 * 120.00246 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99554 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00312 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99798 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47273 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47431 * 120.00454 * 22 20 18 25 25 H 1.48503 * 109.47172 * 240.00178 * 22 20 18 26 26 N 1.30848 * 125.83528 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47302 * 90.00559 * 1 2 3 28 28 H 1.09002 * 109.47535 * 210.00040 * 1 2 3 29 29 H 1.09000 * 109.47496 * 330.00323 * 1 2 3 30 30 H 1.07998 * 126.08731 * 359.97438 * 3 2 1 31 31 H 0.96996 * 119.99408 * 180.02562 * 5 4 3 32 32 H 1.08997 * 117.49906 * 359.97438 * 10 8 6 33 33 H 1.08999 * 117.49679 * 214.97615 * 10 8 6 34 34 H 0.97004 * 120.00106 * 179.72099 * 14 13 11 35 35 H 0.96994 * 120.00539 * 359.71975 * 14 13 11 36 36 H 1.08999 * 109.47047 * 210.00113 * 17 16 4 37 37 H 1.08990 * 109.47061 * 330.00431 * 17 16 4 38 38 H 0.97000 * 119.99986 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7121 -0.0006 5 7 4.7512 1.5275 -0.0003 6 6 4.6157 2.8683 0.0012 7 8 3.5096 3.3661 0.0018 8 6 5.8384 3.7493 0.0009 9 1 6.4857 3.6554 -0.8710 10 6 5.7121 5.1332 0.6412 11 6 6.5052 4.0326 1.3486 12 1 7.5912 4.1245 1.3632 13 6 5.8890 3.4092 2.5745 14 7 6.1984 2.1421 2.9140 15 8 5.1188 4.0494 3.2584 16 7 3.6092 -0.6404 -0.0067 17 6 4.7870 -1.5116 -0.0149 18 6 5.1957 -1.8168 1.4032 19 1 4.6341 -1.4036 2.2280 20 6 6.2861 -2.6245 1.6476 21 7 6.9697 -3.1281 0.6434 22 14 6.7924 -3.0034 3.4053 23 1 5.8668 -2.3213 4.3451 24 1 6.7350 -4.4699 3.6318 25 1 8.1776 -2.5208 3.6364 26 7 2.2730 -1.0608 -0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.9902 2.1597 -0.0004 31 1 5.6358 1.1294 -0.0011 32 1 4.7446 5.4066 1.0622 33 1 6.2763 5.9497 0.1904 34 1 5.8049 1.7422 3.7053 35 1 6.8144 1.6301 2.3671 36 1 4.5480 -2.4408 -0.5321 37 1 5.6065 -1.0098 -0.5292 38 1 7.7370 -3.6960 0.8154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001291911662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:55 Heat of formation + Delta-G solvation = 25.108791 kcal Electronic energy + Delta-G solvation = -23748.272998 eV Core-core repulsion = 20207.239582 eV Total energy + Delta-G solvation = -3541.033416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04394 -40.10530 -38.75041 -36.06837 -34.77872 -33.82571 -33.48114 -32.10949 -29.25524 -28.42124 -26.09848 -25.32824 -24.25000 -22.86269 -21.07861 -20.27691 -19.75528 -19.08650 -17.71590 -16.95532 -16.91041 -16.56974 -16.08163 -15.95260 -15.00111 -14.74514 -14.52959 -14.08826 -13.94709 -13.74817 -13.28595 -12.86682 -12.82047 -12.52967 -12.13190 -12.09262 -11.79495 -11.63097 -11.15256 -11.00877 -10.96542 -10.90209 -10.43835 -10.40248 -10.04297 -9.89895 -9.86019 -9.58530 -9.52631 -8.81376 -7.95073 -7.46876 -6.41659 -4.50284 2.12583 2.50104 2.68926 3.01178 3.05629 3.17173 3.21457 3.31061 3.53212 3.61975 3.79891 4.15602 4.37645 4.49045 4.62682 4.90832 4.91501 5.06096 5.34323 5.42083 5.52069 5.63560 5.93981 6.02171 6.14163 6.16719 6.24222 6.39437 6.64155 6.78018 6.84334 6.99343 7.38829 7.47620 7.51540 7.57976 7.72419 7.86778 8.24975 8.28489 8.56312 8.66334 9.17293 10.65270 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.007156 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.746217 B = 3911.677709 C = 5623.167172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.294 4.294 4 C 0.301 3.699 5 N -0.633 5.633 6 C 0.541 3.459 7 O -0.501 6.501 8 C -0.166 4.166 9 H 0.145 0.855 10 C -0.110 4.110 11 C -0.172 4.172 12 H 0.142 0.858 13 C 0.540 3.460 14 N -0.841 5.841 15 O -0.537 6.537 16 N -0.344 5.344 17 C 0.256 3.744 18 C -0.538 4.538 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.888 5.888 22 Si 0.902 3.098 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.285 5.285 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.160 0.840 31 H 0.414 0.586 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.406 0.594 35 H 0.405 0.595 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 11.660 -1.998 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.326 4.326 4 C 0.079 3.921 5 N -0.279 5.279 6 C 0.327 3.673 7 O -0.374 6.374 8 C -0.188 4.188 9 H 0.162 0.838 10 C -0.147 4.147 11 C -0.193 4.193 12 H 0.160 0.840 13 C 0.324 3.676 14 N -0.403 5.403 15 O -0.413 6.413 16 N -0.129 5.129 17 C 0.138 3.862 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.136 4.136 21 N -0.526 5.526 22 Si 0.729 3.271 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.206 1.206 26 N -0.110 5.110 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.177 0.823 31 H 0.251 0.749 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.237 0.763 35 H 0.234 0.766 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.247 11.123 -1.729 11.325 hybrid contribution 1.366 -0.406 0.913 1.692 sum 2.613 10.717 -0.816 11.061 Atomic orbital electron populations 1.20023 0.87590 1.02476 1.02047 1.22025 0.96533 0.91015 1.01775 1.21275 0.89177 1.00452 1.21710 1.17887 0.87939 0.83333 1.02917 1.42667 1.08136 1.05326 1.71820 1.19549 0.90110 0.81179 0.76506 1.90665 1.26251 1.73747 1.46750 1.22271 0.98471 1.00308 0.97717 0.83787 1.23015 1.02730 0.90139 0.98837 1.22393 1.01002 1.05401 0.90537 0.84025 1.19559 0.80741 0.81972 0.85366 1.43799 1.50156 1.14403 1.31977 1.90756 1.35182 1.62185 1.53180 1.49325 1.06513 1.02066 1.55035 1.19618 0.77851 0.89768 0.98950 1.21370 1.13091 1.31832 0.91352 0.91627 1.24927 0.95828 0.94917 0.97974 1.69922 1.19221 1.32651 1.30814 0.86365 0.78246 0.78776 0.83710 1.19515 1.20549 1.20624 1.77360 0.86128 1.21744 1.25787 0.91351 0.91494 0.91129 0.82269 0.74924 0.86481 0.86577 0.76264 0.76598 0.92606 0.93867 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.00 0.38 -0.58 16 2 C 0.05 1.04 7.21 -82.45 -0.59 0.45 16 3 C -0.29 -6.11 9.58 -39.78 -0.38 -6.49 16 4 C 0.30 6.22 7.66 -153.16 -1.17 5.05 16 5 N -0.63 -10.47 5.41 -11.46 -0.06 -10.54 16 6 C 0.54 8.43 6.48 -10.99 -0.07 8.36 16 7 O -0.50 -9.48 13.75 5.55 0.08 -9.40 16 8 C -0.17 -1.75 6.17 -91.77 -0.57 -2.32 16 9 H 0.14 1.04 8.14 -51.93 -0.42 0.62 16 10 C -0.11 -1.11 9.56 -26.73 -0.26 -1.37 16 11 C -0.17 -1.74 6.17 -91.77 -0.57 -2.31 16 12 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 13 C 0.54 7.67 6.79 -10.99 -0.07 7.60 16 14 N -0.84 -10.66 8.87 31.22 0.28 -10.38 16 15 O -0.54 -9.94 17.45 5.56 0.10 -9.84 16 16 N -0.34 -7.81 3.60 -61.57 -0.22 -8.03 16 17 C 0.26 6.08 6.01 -5.19 -0.03 6.05 16 18 C -0.54 -13.52 9.39 -34.44 -0.32 -13.84 16 19 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 20 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -22.98 13.29 55.43 0.74 -22.24 16 22 Si 0.90 19.37 29.54 -169.99 -5.02 14.35 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 N -0.28 -6.57 12.57 33.65 0.42 -6.15 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.16 3.30 5.83 -52.49 -0.31 2.99 16 31 H 0.41 6.10 7.97 -40.82 -0.33 5.77 16 32 H 0.12 1.54 7.74 -51.93 -0.40 1.13 16 33 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.41 5.38 8.93 -40.82 -0.36 5.02 16 35 H 0.41 4.37 8.83 -40.82 -0.36 4.01 16 36 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.04 0.98 7.50 -51.93 -0.39 0.59 16 38 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -33.39 336.64 -7.03 -40.43 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -4.65 Total: 14.56 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -3.76 Total: 2.17 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 1.15 Total: -57.34 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.17 Total: -19.24 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.39 -7.03 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001291911662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.536 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds