Wall clock time and date at job start Tue Mar 31 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39759 * 125.83987 * 2 1 4 4 C 1.36105 * 107.82655 * 180.14492 * 3 2 1 5 5 N 1.39473 * 126.21632 * 179.91035 * 4 3 2 6 6 C 1.34776 * 119.99941 * 359.68236 * 5 4 3 7 7 O 1.21289 * 120.00042 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00110 * 180.02562 * 6 5 4 9 9 H 1.08998 * 110.21655 * 41.93592 * 8 6 5 10 10 C 1.54479 * 110.24754 * 279.99974 * 8 6 5 11 11 C 1.54623 * 101.76734 * 266.41849 * 10 8 6 12 12 C 1.51282 * 104.31101 * 335.13584 * 11 10 8 13 13 O 1.21286 * 124.94199 * 196.27917 * 12 11 10 14 14 N 1.34735 * 109.93792 * 16.31290 * 12 11 10 15 15 N 1.35266 * 107.56957 * 359.64224 * 4 3 2 16 16 C 1.46494 * 126.04699 * 180.22690 * 15 4 3 17 17 C 1.50708 * 109.47200 * 90.00009 * 16 15 4 18 18 H 1.07995 * 119.99923 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99914 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00282 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99896 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46951 * 60.00269 * 21 19 17 23 23 H 1.48491 * 109.47032 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46852 * 300.00327 * 21 19 17 25 25 N 1.30846 * 125.83690 * 179.74434 * 2 1 3 26 26 H 1.09000 * 109.47065 * 270.23426 * 1 2 3 27 27 H 1.08999 * 109.47075 * 30.23204 * 1 2 3 28 28 H 1.08993 * 109.47526 * 150.23134 * 1 2 3 29 29 H 1.07995 * 126.08488 * 0.03353 * 3 2 1 30 30 H 0.97003 * 120.00422 * 179.68937 * 5 4 3 31 31 H 1.08994 * 110.96846 * 148.29286 * 10 8 6 32 32 H 1.09004 * 110.96814 * 24.53932 * 10 8 6 33 33 H 1.09002 * 110.48860 * 93.88058 * 11 10 8 34 34 H 1.08998 * 110.48497 * 216.38951 * 11 10 8 35 35 H 0.97003 * 124.30433 * 180.38606 * 14 12 11 36 36 H 1.08996 * 109.47540 * 210.00042 * 16 15 4 37 37 H 1.09007 * 109.47179 * 330.00048 * 16 15 4 38 38 H 0.96998 * 120.00270 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0033 5 7 4.7512 1.5274 -0.0062 6 6 4.6157 2.8683 -0.0123 7 8 3.5097 3.3660 -0.0148 8 6 5.8385 3.7492 -0.0160 9 1 6.5890 3.3490 -0.6975 10 6 6.4190 3.8641 1.4110 11 6 5.7363 5.1521 1.9264 12 6 5.4073 5.9291 0.6708 13 8 5.1224 7.1076 0.6377 14 7 5.4770 5.1181 -0.4029 15 7 3.6092 -0.6405 0.0028 16 6 4.7869 -1.5117 0.0067 17 6 5.1908 -1.8041 1.4289 18 1 4.6269 -1.3827 2.2479 19 6 6.2803 -2.6095 1.6844 20 7 6.9674 -3.1222 0.6870 21 14 6.7814 -2.9713 3.4472 22 1 5.6623 -3.6477 4.1510 23 1 7.9744 -3.8554 3.4511 24 1 7.1053 -1.6988 4.1408 25 7 2.2730 -1.0607 0.0047 26 1 -0.3633 0.0042 1.0277 27 1 -0.3633 0.8879 -0.5174 28 1 -0.3634 -0.8920 -0.5102 29 1 1.9902 2.1596 0.0005 30 1 5.6359 1.1293 -0.0038 31 1 7.5023 3.9810 1.3831 32 1 6.1365 3.0034 2.0174 33 1 4.8258 4.9085 2.4739 34 1 6.4198 5.7195 2.5580 35 1 5.3101 5.4030 -1.3150 36 1 4.5498 -2.4456 -0.5029 37 1 5.6083 -1.0145 -0.5094 38 1 7.7337 -3.6891 0.8668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318026166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:53 Heat of formation + Delta-G solvation = 6.552601 kcal Electronic energy + Delta-G solvation = -23279.047714 eV Core-core repulsion = 19737.209641 eV Total energy + Delta-G solvation = -3541.838073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.29056 -40.45368 -38.84170 -36.31659 -34.87307 -33.85038 -32.15633 -31.54053 -29.57406 -28.91727 -27.55498 -26.09846 -23.55597 -22.85476 -21.40683 -20.71552 -19.86880 -19.42664 -17.68164 -17.41306 -16.88128 -16.48169 -15.90533 -15.36481 -15.05043 -14.82614 -14.32651 -14.20570 -13.92211 -13.83570 -13.51304 -12.94607 -12.93526 -12.82067 -12.56921 -12.15320 -11.85667 -11.79746 -11.65606 -11.51597 -11.15812 -10.93682 -10.50140 -10.42375 -10.32343 -10.05725 -9.89920 -9.72253 -9.22606 -8.78498 -7.99997 -7.53770 -6.40061 -4.49114 2.05126 2.31279 2.66532 2.94470 3.12308 3.17077 3.18461 3.22515 3.50439 3.69695 4.06645 4.15508 4.18288 4.39613 4.56446 4.83343 4.93289 5.07563 5.29686 5.43596 5.53446 5.56711 5.63328 5.99241 6.08695 6.09568 6.17270 6.32739 6.46500 6.59734 6.75045 6.75565 6.97026 7.41320 7.48758 7.53887 7.72281 7.79605 8.03276 8.15684 8.54206 8.63260 9.18907 10.66951 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.012354 B = 0.005262 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.936822 B = 5319.940845 C = 6969.890230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.294 4.294 4 C 0.299 3.701 5 N -0.635 5.635 6 C 0.502 3.498 7 O -0.502 6.502 8 C 0.121 3.879 9 H 0.120 0.880 10 C -0.123 4.123 11 C -0.158 4.158 12 C 0.530 3.470 13 O -0.531 6.531 14 N -0.709 5.709 15 N -0.343 5.343 16 C 0.256 3.744 17 C -0.542 4.542 18 H 0.064 0.936 19 C 0.068 3.932 20 N -0.890 5.890 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.274 1.274 25 N -0.283 5.283 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.160 0.840 30 H 0.418 0.582 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.414 0.586 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 11.154 -1.173 11.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C -0.326 4.326 4 C 0.076 3.924 5 N -0.282 5.282 6 C 0.286 3.714 7 O -0.374 6.374 8 C 0.010 3.990 9 H 0.138 0.862 10 C -0.161 4.161 11 C -0.198 4.198 12 C 0.317 3.683 13 O -0.407 6.407 14 N -0.364 5.364 15 N -0.128 5.128 16 C 0.139 3.861 17 C -0.580 4.580 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.733 3.267 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.199 1.199 25 N -0.109 5.109 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.177 0.823 30 H 0.254 0.746 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.254 0.746 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.226 10.680 -1.124 10.741 hybrid contribution 0.877 0.131 0.469 1.003 sum 1.103 10.810 -0.655 10.886 Atomic orbital electron populations 1.20024 0.87561 1.02364 1.02202 1.22038 0.96553 0.91018 1.01799 1.21262 0.89109 1.00419 1.21772 1.17909 0.87918 0.83378 1.03160 1.42737 1.08434 1.05381 1.71684 1.20984 0.91745 0.81651 0.77001 1.90680 1.26395 1.73653 1.46680 1.21466 0.94156 0.83162 1.00187 0.86248 1.22656 1.01636 0.99294 0.92508 1.22378 1.03770 0.96609 0.97086 1.20888 0.74883 0.86157 0.86337 1.90757 1.48559 1.15044 1.86386 1.45931 1.71763 1.08415 1.10311 1.49372 1.06565 1.02131 1.54770 1.19631 0.77763 0.89800 0.98944 1.21292 1.13352 1.32142 0.91262 0.91745 1.24927 0.95674 0.94792 0.98172 1.69902 1.19163 1.32403 1.31228 0.86414 0.78136 0.78536 0.83622 1.19879 1.20890 1.19941 1.77372 0.86133 1.21771 1.25607 0.91274 0.91154 0.91508 0.82254 0.74563 0.88064 0.88025 0.87277 0.87441 0.74630 0.92542 0.93790 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.00 0.38 -0.54 16 2 C 0.05 0.99 7.21 -82.45 -0.59 0.40 16 3 C -0.29 -5.77 9.58 -39.78 -0.38 -6.15 16 4 C 0.30 5.89 7.66 -153.16 -1.17 4.72 16 5 N -0.63 -9.68 5.42 -11.46 -0.06 -9.74 16 6 C 0.50 6.81 6.97 -10.98 -0.08 6.74 16 7 O -0.50 -8.48 13.68 5.55 0.08 -8.41 16 8 C 0.12 1.10 3.93 -68.16 -0.27 0.83 16 9 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 10 C -0.12 -0.95 6.69 -25.10 -0.17 -1.12 16 11 C -0.16 -1.47 6.84 -26.74 -0.18 -1.65 16 12 C 0.53 6.57 8.46 -10.72 -0.09 6.48 16 13 O -0.53 -8.68 18.03 5.55 0.10 -8.58 16 14 N -0.71 -7.28 5.46 -53.80 -0.29 -7.57 16 15 N -0.34 -7.64 3.60 -61.57 -0.22 -7.86 16 16 C 0.26 6.07 6.01 -5.19 -0.03 6.03 16 17 C -0.54 -13.82 9.39 -34.44 -0.32 -14.14 16 18 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -23.25 13.29 55.43 0.74 -22.52 16 21 Si 0.91 19.72 29.54 -169.99 -5.02 14.69 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 25 N -0.28 -6.39 12.56 33.65 0.42 -5.97 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.16 3.08 5.83 -52.49 -0.31 2.77 16 30 H 0.42 5.64 7.96 -40.82 -0.33 5.31 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.84 7.89 -51.93 -0.41 0.43 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.41 3.81 8.96 -40.82 -0.37 3.44 16 36 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.04 0.99 7.50 -51.93 -0.39 0.60 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -33.33 330.94 -7.01 -40.34 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.72 Total: 7.40 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -3.01 Total: 3.23 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.58 Total: -53.66 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.18 Total: -16.99 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.33 -7.01 -40.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318026166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.888 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds