Wall clock time and date at job start Tue Mar 31 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 N 1.46497 * 113.53886 * 270.81230 * 4 3 2 6 6 C 1.34774 * 120.00109 * 252.49394 * 5 4 3 7 7 O 1.21366 * 119.99881 * 359.97438 * 6 5 4 8 8 C 1.49303 * 120.00422 * 179.97438 * 6 5 4 9 9 O 1.21409 * 119.99624 * 0.02562 * 8 6 5 10 10 N 1.34774 * 120.00422 * 179.97438 * 8 6 5 11 11 C 1.40297 * 120.00423 * 180.02562 * 10 8 6 12 12 C 1.40719 * 126.09535 * 359.68741 * 11 10 8 13 13 N 1.30878 * 108.37260 * 179.85214 * 12 11 10 14 14 N 1.40057 * 108.43793 * 0.41037 * 13 12 11 15 15 C 1.37291 * 126.06038 * 179.74024 * 14 13 12 16 16 H 1.07999 * 120.00897 * 179.97438 * 15 14 13 17 17 C 1.39017 * 119.99661 * 359.97438 * 15 14 13 18 18 N 1.31284 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99872 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47334 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46934 * 119.99838 * 19 17 15 22 22 H 1.48499 * 109.46732 * 239.99612 * 19 17 15 23 23 C 1.35783 * 126.10240 * 180.02562 * 11 10 8 24 24 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 25 25 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 26 26 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 27 27 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 28 28 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 29 29 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 30 30 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 31 31 H 1.08998 * 113.66516 * 139.92867 * 4 3 2 32 32 H 0.96999 * 120.00430 * 72.48916 * 5 4 3 33 33 H 0.96999 * 119.99461 * 359.97438 * 10 8 6 34 34 H 1.08001 * 125.81716 * 359.97438 * 12 11 10 35 35 H 0.96997 * 119.99905 * 180.02562 * 18 17 15 36 36 H 1.08000 * 126.24758 * 359.93301 * 23 11 10 37 37 H 1.09006 * 113.61506 * 254.52982 * 24 2 1 38 38 H 1.08996 * 113.61642 * 25.43366 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 7 4.3734 0.2940 -0.3364 6 6 5.5488 0.9523 -0.3755 7 8 5.6289 2.0173 -0.9519 8 6 6.7523 0.3714 0.2903 9 8 6.6723 -0.6943 0.8665 10 7 7.9279 1.0294 0.2508 11 6 9.0589 0.4834 0.8759 12 6 9.1099 -0.7330 1.5816 13 7 10.3320 -0.9067 2.0165 14 7 11.1048 0.1908 1.6164 15 6 12.4378 0.3812 1.8842 16 1 12.9394 1.2680 1.5259 17 6 13.1419 -0.5674 2.6169 18 7 12.5321 -1.6452 3.0530 19 14 14.9554 -0.3080 2.9820 20 1 15.4020 0.9759 2.3843 21 1 15.1638 -0.2692 4.4518 22 1 15.7422 -1.4248 2.3998 23 6 10.2980 1.0373 0.9134 24 6 2.1460 -0.1865 -1.3966 25 1 -0.3633 -0.9603 -0.3660 26 1 -0.3633 0.7971 -0.6487 27 1 -0.3634 0.1632 1.0147 28 1 1.9533 -0.6616 0.7559 29 1 1.4945 2.1704 -0.4289 30 1 2.5650 1.7024 0.9626 31 1 3.4444 1.5619 -1.7878 32 1 4.3095 -0.5574 0.1240 33 1 7.9920 1.8803 -0.2105 34 1 8.2821 -1.4092 1.7361 35 1 13.0233 -2.3069 3.5645 36 1 10.5916 1.9761 0.4674 37 1 2.5651 -1.1795 -1.5599 38 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319359103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:06 Heat of formation + Delta-G solvation = 10.627260 kcal Electronic energy + Delta-G solvation = -22302.397541 eV Core-core repulsion = 18760.736159 eV Total energy + Delta-G solvation = -3541.661382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.09720 -41.36730 -40.15785 -39.00196 -36.22986 -35.14452 -34.43860 -32.30598 -30.31925 -29.81983 -27.27465 -26.63281 -25.77234 -23.46992 -22.90036 -21.95023 -21.26311 -20.21109 -19.58260 -19.16869 -17.66598 -17.45972 -16.96802 -16.79418 -16.64935 -15.84351 -15.62751 -15.54577 -15.18772 -14.97436 -14.82510 -14.75297 -14.32782 -13.52671 -13.42527 -13.38983 -12.98905 -12.94618 -12.88911 -12.59776 -12.48751 -12.02755 -12.00125 -11.82602 -11.26060 -11.10113 -11.09149 -10.88397 -10.60336 -10.23032 -10.15073 -8.63549 -8.49640 -6.27299 0.25437 1.27293 1.27916 1.42000 1.60104 1.71281 2.01991 2.11190 2.51679 2.56487 2.91846 3.07034 3.49957 3.54367 3.62117 3.89372 3.97310 4.38894 4.51266 4.52774 4.69557 4.73134 4.83074 4.86028 4.94043 4.94823 4.97633 5.10275 5.16847 5.20202 5.25857 5.29681 5.41418 5.58660 5.89877 6.00633 6.24052 6.47131 6.66444 6.79100 7.05303 7.40548 7.61874 8.49813 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.051905 B = 0.002621 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.316361 B =10680.746044 C =11044.251608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.102 3.898 5 N -0.672 5.672 6 C 0.528 3.472 7 O -0.540 6.540 8 C 0.486 3.514 9 O -0.543 6.543 10 N -0.582 5.582 11 C -0.057 4.057 12 C -0.049 4.049 13 N -0.308 5.308 14 N -0.163 5.163 15 C -0.352 4.352 16 H 0.142 0.858 17 C -0.006 4.006 18 N -0.821 5.821 19 Si 1.020 2.980 20 H -0.241 1.241 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.075 4.075 24 C -0.130 4.130 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.418 0.582 33 H 0.423 0.577 34 H 0.176 0.824 35 H 0.278 0.722 36 H 0.189 0.811 37 H 0.076 0.924 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.977 5.520 -7.576 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 C -0.183 4.183 4 C -0.002 4.002 5 N -0.324 5.324 6 C 0.308 3.692 7 O -0.417 6.417 8 C 0.268 3.732 9 O -0.422 6.422 10 N -0.226 5.226 11 C -0.163 4.163 12 C -0.224 4.224 13 N -0.140 5.140 14 N 0.069 4.931 15 C -0.483 4.483 16 H 0.160 0.840 17 C -0.218 4.218 18 N -0.449 5.449 19 Si 0.839 3.161 20 H -0.164 1.164 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.226 4.226 24 C -0.168 4.168 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.256 0.744 33 H 0.261 0.739 34 H 0.193 0.807 35 H 0.088 0.912 36 H 0.205 0.795 37 H 0.095 0.905 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.192 4.571 -6.828 19.054 hybrid contribution 0.210 0.330 -0.042 0.393 sum -16.982 4.901 -6.871 18.963 Atomic orbital electron populations 1.21694 0.93467 1.02425 1.02054 1.22566 0.96876 0.96632 0.97364 1.23564 0.97410 0.97997 0.99376 1.22232 0.83556 0.97989 0.96437 1.45415 1.07695 1.24838 1.54446 1.19659 0.84354 0.84717 0.80479 1.90731 1.85226 1.21975 1.43795 1.20263 0.84639 0.85520 0.82827 1.90648 1.84647 1.22518 1.44338 1.42082 1.06115 1.23602 1.50838 1.17293 0.87617 0.98915 1.12494 1.24255 0.96409 0.98487 1.03250 1.78157 1.01972 1.08694 1.25130 1.44852 1.07770 1.11148 1.29343 1.20702 0.81164 1.09807 1.36637 0.84046 1.26901 1.06383 0.93922 0.94599 1.70381 1.38794 1.08071 1.27624 0.84517 0.73330 0.79836 0.78418 1.16391 1.19718 1.19721 1.22010 0.90267 1.00980 1.09307 1.23390 0.96243 0.98842 0.98329 0.91936 0.91677 0.92710 0.89712 0.87359 0.92326 0.88312 0.74438 0.73885 0.80737 0.91230 0.79450 0.90492 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.70 71.98 0.70 -0.64 16 2 C -0.12 -1.43 4.23 -10.27 -0.04 -1.47 16 3 C -0.15 -2.13 7.44 31.18 0.23 -1.89 16 4 C 0.10 1.78 4.33 45.58 0.20 1.97 16 5 N -0.67 -15.18 5.25 -441.23 -2.32 -17.50 16 6 C 0.53 15.46 7.88 87.22 0.69 16.15 16 7 O -0.54 -17.14 16.08 -3.30 -0.05 -17.20 16 8 C 0.49 17.36 7.85 87.22 0.69 18.05 16 9 O -0.54 -22.03 13.62 -3.43 -0.05 -22.08 16 10 N -0.58 -21.57 5.45 -305.33 -1.66 -23.24 16 11 C -0.06 -2.63 6.90 37.82 0.26 -2.37 16 12 C -0.05 -2.60 10.84 85.44 0.93 -1.67 16 13 N -0.31 -18.30 10.39 -56.43 -0.59 -18.89 16 14 N -0.16 -8.99 3.73 -189.98 -0.71 -9.70 16 15 C -0.35 -18.45 10.25 84.03 0.86 -17.59 16 16 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 17 C -0.01 -0.31 5.50 84.96 0.47 0.16 16 18 N -0.82 -46.74 11.81 21.67 0.26 -46.49 16 19 Si 1.02 38.11 29.55 68.60 2.03 40.14 16 20 H -0.24 -8.08 7.11 99.48 0.71 -7.38 16 21 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 23 C -0.07 -3.48 11.50 83.41 0.96 -2.52 16 24 C -0.13 -1.55 7.39 31.12 0.23 -1.32 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.52 7.98 -2.39 -0.02 0.50 16 27 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.11 1.25 7.99 -2.39 -0.02 1.23 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.89 7.47 -2.39 -0.02 1.88 16 32 H 0.42 8.85 8.17 -92.71 -0.76 8.09 16 33 H 0.42 13.21 8.29 -92.71 -0.77 12.44 16 34 H 0.18 9.14 5.92 -2.91 -0.02 9.13 16 35 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.19 6.96 8.06 -2.91 -0.02 6.94 16 37 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.12 0.97 8.10 -2.39 -0.02 0.95 16 Total: -1.00 -71.30 329.83 2.66 -68.64 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -0.41 Total: 39.44 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.16 Total: 6.87 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -5.02 Total: -115.81 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.10 Total: -39.28 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -71.30 2.66 -68.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319359103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.270 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds