Wall clock time and date at job start Tue Mar 31 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46766 * 124.34750 * 2 1 4 4 C 1.54475 * 105.47152 * 196.99676 * 3 2 1 5 5 C 1.54632 * 101.76313 * 334.58117 * 4 3 2 6 6 H 1.09001 * 110.59908 * 143.53678 * 5 4 3 7 7 C 1.50704 * 110.48473 * 266.11732 * 5 4 3 8 8 O 1.21287 * 120.00287 * 356.23837 * 7 5 4 9 9 N 1.34780 * 119.99539 * 176.22878 * 7 5 4 10 10 C 1.40161 * 119.99667 * 180.02562 * 9 7 5 11 11 C 1.40411 * 125.97348 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86657 * 180.02562 * 11 10 9 13 13 N 1.34969 * 107.86090 * 359.97438 * 12 11 10 14 14 C 1.46498 * 125.97666 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.46983 * 125.00290 * 14 13 12 16 16 H 1.07999 * 120.00538 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99661 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 N 1.31220 * 125.96920 * 180.37249 * 10 9 7 24 24 C 1.34415 * 124.35023 * 179.97438 * 2 1 3 25 25 O 1.21283 * 124.94295 * 359.64992 * 24 2 1 26 26 H 1.08999 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47348 * 300.00055 * 1 2 3 28 28 H 1.08998 * 109.47580 * 60.00001 * 1 2 3 29 29 H 1.08998 * 110.24156 * 315.99573 * 3 2 1 30 30 H 1.08997 * 110.24707 * 77.90376 * 3 2 1 31 31 H 1.09001 * 110.96716 * 216.46834 * 4 3 2 32 32 H 1.08998 * 110.97075 * 92.70081 * 4 3 2 33 33 H 0.96999 * 119.99903 * 359.97438 * 9 7 5 34 34 H 1.07999 * 126.06502 * 0.05409 * 11 10 9 35 35 H 1.07992 * 126.06582 * 179.97438 * 12 11 10 36 36 H 1.09002 * 109.46847 * 4.99989 * 14 13 12 37 37 H 1.09000 * 109.46849 * 245.00368 * 14 13 12 38 38 H 0.97001 * 119.99697 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7011 0.7487 -0.4352 5 6 3.6897 -0.7378 -0.0092 6 1 4.2333 -1.3477 -0.7308 7 6 4.2835 -0.8966 1.3668 8 8 4.7473 0.0652 1.9419 9 7 4.2988 -2.1076 1.9584 10 6 4.8505 -2.2552 3.2383 11 6 5.4179 -1.2323 4.0149 12 6 5.8346 -1.7783 5.1799 13 7 5.5437 -3.0959 5.1470 14 6 5.8248 -4.0661 6.2080 15 6 4.5506 -4.7723 6.5933 16 1 3.6239 -4.5231 6.0978 17 6 4.5676 -5.7359 7.5794 18 7 5.6959 -6.0391 8.1833 19 14 2.9880 -6.6109 8.0576 20 1 2.8216 -7.8255 7.2195 21 1 1.8340 -5.7008 7.8446 22 1 3.0524 -7.0020 9.4887 23 7 4.9327 -3.3749 3.9177 24 6 2.2235 -1.1097 0.0005 25 8 1.7946 -2.2442 0.0071 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8985 1.9381 -0.7105 30 1 2.3290 1.6441 0.9999 31 1 4.4753 1.3011 0.0973 32 1 3.8273 0.8445 -1.5136 33 1 3.9274 -2.8767 1.4986 34 1 5.5056 -0.1936 3.7323 35 1 6.3148 -1.2533 5.9923 36 1 6.2297 -3.5471 7.0769 37 1 6.5508 -4.7960 5.8499 38 1 6.5163 -5.5850 7.9347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320682483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:18 Heat of formation + Delta-G solvation = 18.646844 kcal Electronic energy + Delta-G solvation = -22893.831414 eV Core-core repulsion = 19352.517787 eV Total energy + Delta-G solvation = -3541.313627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40260 -40.48381 -38.92076 -36.73627 -34.88874 -33.70323 -33.16963 -30.92588 -29.42684 -28.41069 -27.11602 -26.22514 -23.73437 -22.73547 -21.42212 -20.63278 -20.08651 -19.45308 -17.77918 -17.19337 -17.14121 -16.59525 -16.08918 -15.76626 -15.28316 -14.78552 -14.38124 -14.14176 -13.95533 -13.78452 -13.66510 -13.29154 -13.03879 -12.95339 -12.57557 -12.45732 -12.24808 -11.90096 -11.80745 -11.61387 -11.15475 -10.79890 -10.51481 -10.30888 -10.16588 -10.05650 -9.72555 -9.08621 -9.00183 -8.57238 -8.23665 -7.56273 -6.57906 -4.31754 1.91219 2.22867 2.59962 2.76176 2.82803 3.39455 3.41698 3.58270 3.58841 3.73070 3.86606 4.04172 4.38638 4.42140 4.60796 4.72433 4.94344 5.00898 5.13400 5.16061 5.18629 5.40953 5.41880 5.49705 5.64116 5.70030 6.08841 6.13937 6.36173 6.46807 6.55665 6.66720 6.73967 7.28751 7.41030 7.68432 7.75421 7.81769 8.06978 8.35288 8.52432 8.62216 9.36350 10.79921 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021391 B = 0.003569 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.653564 B = 7842.551698 C = 8717.404655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.619 5.619 3 C 0.100 3.900 4 C -0.117 4.117 5 C -0.145 4.145 6 H 0.138 0.862 7 C 0.538 3.462 8 O -0.509 6.509 9 N -0.622 5.622 10 C 0.257 3.743 11 C -0.285 4.285 12 C 0.051 3.949 13 N -0.316 5.316 14 C 0.249 3.751 15 C -0.608 4.608 16 H 0.064 0.936 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 1.079 2.921 20 H -0.284 1.284 21 H -0.287 1.287 22 H -0.282 1.282 23 N -0.297 5.297 24 C 0.526 3.474 25 O -0.516 6.516 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.418 0.582 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 16.396 -18.110 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.354 5.354 3 C -0.023 4.023 4 C -0.155 4.155 5 C -0.170 4.170 6 H 0.156 0.844 7 C 0.322 3.678 8 O -0.383 6.383 9 N -0.270 5.270 10 C 0.004 3.996 11 C -0.316 4.316 12 C -0.099 4.099 13 N -0.097 5.097 14 C 0.131 3.869 15 C -0.646 4.646 16 H 0.082 0.918 17 C -0.181 4.181 18 N -0.541 5.541 19 Si 0.907 3.093 20 H -0.211 1.211 21 H -0.213 1.213 22 H -0.207 1.207 23 N -0.128 5.128 24 C 0.311 3.689 25 O -0.391 6.391 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.254 0.746 34 H 0.179 0.821 35 H 0.186 0.814 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.111 13.998 -16.575 22.539 hybrid contribution 0.613 1.615 -1.245 2.129 sum -5.497 15.614 -17.820 24.322 Atomic orbital electron populations 1.21615 0.77428 1.04113 1.01735 1.48098 1.06850 1.07286 1.73135 1.22192 0.90158 0.87171 1.02791 1.22618 0.97892 0.92296 1.02684 1.22135 0.95948 1.01716 0.97221 0.84429 1.19654 0.79361 0.82398 0.86398 1.90637 1.45443 1.38441 1.63760 1.42442 1.58397 1.11500 1.14628 1.19100 1.00061 0.93586 0.86901 1.21507 1.13771 1.01080 0.95265 1.22567 1.01945 0.85746 0.99641 1.48827 1.41845 1.06967 1.12106 1.19778 0.98696 0.86668 0.81781 1.22137 0.94268 1.24407 1.23824 0.91787 1.25927 1.03944 0.95243 0.93015 1.70827 0.99519 1.42111 1.41636 0.83381 0.73500 0.75908 0.76559 1.21069 1.21320 1.20736 1.77399 1.21065 1.19807 0.94500 1.20307 0.87902 0.84784 0.75894 1.90788 1.77956 1.20698 1.49691 0.89677 0.91733 0.91781 0.89805 0.90265 0.86828 0.88950 0.74584 0.82114 0.81414 0.93555 0.94719 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 11.14 59.85 0.67 1.37 16 2 N -0.62 -5.89 3.33 -180.29 -0.60 -6.49 16 3 C 0.10 0.69 7.34 -3.12 -0.02 0.66 16 4 C -0.12 -0.80 6.53 -25.10 -0.16 -0.96 16 5 C -0.15 -1.45 3.33 -91.78 -0.31 -1.75 16 6 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 7 C 0.54 7.63 7.16 -10.98 -0.08 7.55 16 8 O -0.51 -8.06 12.59 5.55 0.07 -7.99 16 9 N -0.62 -10.43 5.38 -11.13 -0.06 -10.49 16 10 C 0.26 5.34 8.11 -154.38 -1.25 4.09 16 11 C -0.28 -5.65 9.61 -39.83 -0.38 -6.03 16 12 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 13 N -0.32 -7.52 3.66 -62.57 -0.23 -7.75 16 14 C 0.25 6.39 5.57 -5.20 -0.03 6.36 16 15 C -0.61 -17.44 9.24 -34.44 -0.32 -17.76 16 16 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 17 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 18 N -0.91 -26.63 13.65 55.43 0.76 -25.87 16 19 Si 1.08 25.47 29.90 -169.99 -5.08 20.38 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 N -0.30 -7.14 12.43 31.44 0.39 -6.75 16 24 C 0.53 6.34 7.24 -10.87 -0.08 6.27 16 25 O -0.52 -8.03 17.17 5.55 0.10 -7.93 16 26 H 0.08 0.76 7.53 -51.93 -0.39 0.37 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.11 0.85 6.91 -51.93 -0.36 0.49 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.42 6.56 8.61 -40.82 -0.35 6.21 16 34 H 0.16 2.99 5.92 -52.49 -0.31 2.68 16 35 H 0.17 2.72 8.06 -52.49 -0.42 2.30 16 36 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 37 H 0.04 0.93 8.01 -51.93 -0.42 0.51 16 38 H 0.27 7.67 7.22 -40.82 -0.29 7.37 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -35.66 328.46 -6.67 -42.33 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.70 Total: 4.42 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.26 Total: 1.19 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.26 Total: -57.35 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.17 Total: -15.93 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.66 -6.67 -42.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320682483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.978 kcal (2) G-P(sol) polarization free energy of solvation -35.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds