Wall clock time and date at job start Tue Mar 31 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31813 * 119.02895 * 2 1 4 4 C 1.32256 * 120.89861 * 179.97438 * 3 2 1 5 5 C 1.39290 * 119.00640 * 0.02562 * 4 3 2 6 6 N 1.39775 * 120.87477 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00149 * 34.50481 * 6 5 4 8 8 O 1.21379 * 119.99748 * 355.53325 * 7 6 5 9 9 C 1.49349 * 120.00508 * 175.52966 * 7 6 5 10 10 O 1.21364 * 119.99724 * 6.20592 * 9 7 6 11 11 N 1.34778 * 120.00266 * 186.20141 * 9 7 6 12 12 C 1.46495 * 120.00127 * 5.15532 * 11 9 7 13 13 C 1.46503 * 120.00051 * 185.15560 * 11 9 7 14 14 H 1.09002 * 109.47051 * 0.02562 * 13 11 9 15 15 C 1.52995 * 109.47351 * 119.99900 * 13 11 9 16 16 C 1.50697 * 109.47058 * 240.00043 * 13 11 9 17 17 H 1.08001 * 120.00341 * 0.02562 * 16 13 11 18 18 C 1.37877 * 119.99969 * 179.97438 * 16 13 11 19 19 N 1.31511 * 120.00054 * 359.97438 * 18 16 13 20 20 Si 1.86810 * 119.99977 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.46762 * 270.00134 * 20 18 16 22 22 H 1.48498 * 109.46763 * 29.99938 * 20 18 16 23 23 H 1.48501 * 109.46799 * 150.00202 * 20 18 16 24 24 C 1.39292 * 118.25026 * 0.26606 * 5 4 3 25 25 N 1.31804 * 119.03556 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46743 * 90.00062 * 1 2 3 27 27 H 1.08994 * 109.46814 * 209.99691 * 1 2 3 28 28 H 1.08991 * 109.47658 * 330.00143 * 1 2 3 29 29 H 1.07999 * 120.49535 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00245 * 214.50106 * 6 5 4 31 31 H 1.08997 * 109.47193 * 275.79208 * 12 11 9 32 32 H 1.09004 * 109.46956 * 35.79134 * 12 11 9 33 33 H 1.08996 * 109.47504 * 155.78865 * 12 11 9 34 34 H 1.09000 * 109.47571 * 179.97438 * 15 13 11 35 35 H 1.08996 * 109.47387 * 300.00070 * 15 13 11 36 36 H 1.09002 * 109.46950 * 60.00053 * 15 13 11 37 37 H 0.97002 * 119.99691 * 179.97438 * 19 18 16 38 38 H 1.08009 * 120.49337 * 179.73273 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1466 1.1525 0.0000 4 6 3.4684 1.1957 0.0005 5 6 4.1833 0.0002 0.0005 6 7 5.5810 0.0002 0.0005 7 6 6.2549 0.9621 0.6617 8 8 5.6507 1.8734 1.1888 9 6 7.7450 0.9067 0.7459 10 8 8.3567 0.0612 0.1263 11 7 8.4103 1.7957 1.5098 12 6 7.6687 2.7433 2.3453 13 6 9.8752 1.8143 1.5047 14 1 10.2460 1.0440 0.8284 15 6 10.3663 3.1847 1.0341 16 6 10.3858 1.5488 2.8975 17 1 9.6889 1.3824 3.7056 18 6 11.7427 1.5173 3.1399 19 7 12.5914 1.7184 2.1557 20 14 12.3757 1.1875 4.8663 21 1 12.5273 2.4742 5.5921 22 1 11.4106 0.3215 5.5902 23 1 13.6921 0.5047 4.7888 24 6 3.4685 -1.1954 -0.0057 25 7 2.1467 -1.1524 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 3.9858 2.1437 0.0009 30 1 6.0661 -0.6921 -0.4753 31 1 7.3841 3.6093 1.7475 32 1 6.7725 2.2603 2.7347 33 1 8.2975 3.0655 3.1752 34 1 11.4562 3.1988 1.0307 35 1 9.9970 3.3768 0.0267 36 1 9.9955 3.9553 1.7100 37 1 13.5460 1.6966 2.3264 38 1 3.9861 -2.1433 -0.0103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320895745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:54 Heat of formation + Delta-G solvation = -4.546684 kcal Electronic energy + Delta-G solvation = -22946.851167 eV Core-core repulsion = 19404.531793 eV Total energy + Delta-G solvation = -3542.319374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62633 -40.35265 -38.32326 -36.21420 -35.23301 -33.93277 -32.88001 -32.16268 -29.64561 -28.27569 -26.35543 -25.36661 -25.02951 -24.67742 -22.69177 -21.02677 -19.64430 -18.05302 -17.71252 -16.99420 -16.91863 -16.53062 -15.99316 -15.66998 -15.28171 -15.06429 -14.48742 -13.95950 -13.83609 -13.48808 -13.25719 -12.91951 -12.62720 -12.60460 -12.48395 -12.02788 -11.72439 -11.60444 -11.24133 -11.18132 -11.04243 -10.91389 -10.85868 -10.82959 -10.38057 -10.26576 -9.52339 -9.31762 -9.00319 -8.67477 -8.54325 -7.86748 -6.18630 -4.27346 0.51616 0.84892 1.67909 2.40097 3.21320 3.28616 3.31437 3.41174 3.56867 3.75126 3.83531 3.95251 4.26436 4.31515 4.57478 4.71164 4.95279 5.13481 5.27517 5.29768 5.50384 5.64289 5.82412 5.93642 6.12495 6.26392 6.46054 6.57508 6.65717 6.73363 6.82519 6.90184 7.12205 7.28229 7.57844 7.63517 7.85597 7.87164 8.00350 8.23070 8.45812 8.76989 9.39214 10.86877 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.033964 B = 0.003208 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.208708 B = 8725.690094 C = 8776.382698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.291 3.709 3 N -0.500 5.500 4 C 0.152 3.848 5 C 0.041 3.959 6 N -0.642 5.642 7 C 0.510 3.490 8 O -0.499 6.499 9 C 0.495 3.505 10 O -0.532 6.532 11 N -0.549 5.549 12 C 0.081 3.919 13 C 0.255 3.745 14 H 0.067 0.933 15 C -0.147 4.147 16 C -0.530 4.530 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.274 1.274 23 H -0.284 1.284 24 C 0.132 3.868 25 N -0.500 5.500 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.184 0.816 30 H 0.427 0.573 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.013 0.987 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.480 -2.169 -4.473 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.024 3.976 3 N -0.214 5.214 4 C -0.016 4.016 5 C -0.059 4.059 6 N -0.291 5.291 7 C 0.294 3.706 8 O -0.372 6.372 9 C 0.275 3.725 10 O -0.411 6.411 11 N -0.279 5.279 12 C -0.062 4.062 13 C 0.156 3.844 14 H 0.085 0.915 15 C -0.206 4.206 16 C -0.569 4.569 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.198 1.198 23 H -0.210 1.210 24 C -0.037 4.037 25 N -0.214 5.214 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.200 0.800 30 H 0.266 0.734 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.032 0.968 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.275 -1.901 -4.398 18.893 hybrid contribution 1.691 -0.463 0.751 1.907 sum -16.585 -2.363 -3.648 17.145 Atomic orbital electron populations 1.20520 0.85588 1.04129 1.03765 1.23269 0.98376 0.83513 0.92471 1.68344 1.09233 1.30148 1.13649 1.23613 0.88999 0.98503 0.90514 1.19622 0.84961 0.96990 1.04352 1.43104 1.03290 1.31080 1.51594 1.21128 0.90248 0.81610 0.77628 1.90708 1.70177 1.32788 1.43532 1.19465 0.86103 0.83976 0.82965 1.90742 1.68360 1.35838 1.46179 1.48295 1.09805 1.31056 1.38774 1.21959 0.96348 0.92618 0.95321 1.19203 0.70975 0.95835 0.98392 0.91507 1.22109 1.04908 0.97286 0.96285 1.21260 0.91951 1.50070 0.93604 0.91963 1.24882 0.96552 0.94645 0.97521 1.69867 1.02614 1.48736 1.31172 0.86439 0.78327 0.78462 0.83877 1.20477 1.19842 1.21003 1.23164 0.89660 0.97290 0.93624 1.68233 1.08745 1.30426 1.14038 0.89740 0.89714 0.89639 0.79963 0.73384 0.92973 0.90886 0.90179 0.88416 0.96777 0.94721 0.92484 0.80930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.31 36.00 0.37 -0.26 16 2 C 0.29 3.38 7.64 -157.17 -1.20 2.18 16 3 N -0.50 -6.48 10.32 -10.56 -0.11 -6.59 16 4 C 0.15 1.99 9.98 -16.98 -0.17 1.82 16 5 C 0.04 0.49 6.35 -83.45 -0.53 -0.04 16 6 N -0.64 -8.05 5.35 -10.11 -0.05 -8.10 16 7 C 0.51 8.03 7.56 -11.63 -0.09 7.94 16 8 O -0.50 -8.12 10.86 5.47 0.06 -8.06 16 9 C 0.49 9.62 7.72 -11.63 -0.09 9.53 16 10 O -0.53 -11.48 15.83 5.48 0.09 -11.40 16 11 N -0.55 -11.44 2.75 -175.82 -0.48 -11.93 16 12 C 0.08 1.44 8.16 59.84 0.49 1.93 16 13 C 0.26 6.22 2.62 -69.08 -0.18 6.04 16 14 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 15 C -0.15 -3.38 8.97 37.16 0.33 -3.05 16 16 C -0.53 -13.82 7.95 -34.44 -0.27 -14.09 16 17 H 0.06 1.61 7.43 -52.49 -0.39 1.22 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 20 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.13 1.41 11.26 -16.98 -0.19 1.22 16 25 N -0.50 -5.87 10.32 -10.56 -0.11 -5.98 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.18 2.43 6.30 -52.49 -0.33 2.10 16 30 H 0.43 4.64 8.31 -40.82 -0.34 4.30 16 31 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.07 1.24 5.99 -51.93 -0.31 0.93 16 33 H 0.08 1.47 7.11 -51.93 -0.37 1.10 16 34 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 37 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 324.28 15.07 4.89 4.89 Total: -1.00 -29.98 324.28 -6.22 -36.20 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.48 Total: 4.14 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: -1.63 Total: 14.89 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.13 Total: -56.09 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.15 Total: -19.46 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.98 -6.22 -36.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320895745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.656 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds