Wall clock time and date at job start Tue Mar 31 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31813 * 119.02895 * 2 1 4 4 C 1.32256 * 120.89861 * 179.97438 * 3 2 1 5 5 C 1.39290 * 119.00640 * 0.02562 * 4 3 2 6 6 N 1.39775 * 120.87477 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00149 * 34.50481 * 6 5 4 8 8 O 1.21379 * 119.99748 * 355.53325 * 7 6 5 9 9 C 1.49349 * 120.00508 * 175.52966 * 7 6 5 10 10 O 1.21364 * 119.99724 * 6.20592 * 9 7 6 11 11 N 1.34778 * 120.00266 * 186.20141 * 9 7 6 12 12 C 1.46495 * 120.00127 * 5.15532 * 11 9 7 13 13 C 1.46503 * 120.00051 * 185.15560 * 11 9 7 14 14 H 1.09002 * 109.47051 * 0.02562 * 13 11 9 15 15 C 1.52995 * 109.47351 * 119.99900 * 13 11 9 16 16 C 1.50697 * 109.47058 * 240.00043 * 13 11 9 17 17 H 1.08001 * 120.00341 * 0.02562 * 16 13 11 18 18 C 1.37877 * 119.99969 * 179.97438 * 16 13 11 19 19 N 1.31511 * 120.00054 * 359.97438 * 18 16 13 20 20 Si 1.86810 * 119.99977 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.46762 * 270.00134 * 20 18 16 22 22 H 1.48498 * 109.46763 * 29.99938 * 20 18 16 23 23 H 1.48501 * 109.46799 * 150.00202 * 20 18 16 24 24 C 1.39292 * 118.25026 * 0.26606 * 5 4 3 25 25 N 1.31804 * 119.03556 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46743 * 90.00062 * 1 2 3 27 27 H 1.08994 * 109.46814 * 209.99691 * 1 2 3 28 28 H 1.08991 * 109.47658 * 330.00143 * 1 2 3 29 29 H 1.07999 * 120.49535 * 180.02562 * 4 3 2 30 30 H 0.97001 * 120.00245 * 214.50106 * 6 5 4 31 31 H 1.08997 * 109.47193 * 275.79208 * 12 11 9 32 32 H 1.09004 * 109.46956 * 35.79134 * 12 11 9 33 33 H 1.08996 * 109.47504 * 155.78865 * 12 11 9 34 34 H 1.09000 * 109.47571 * 179.97438 * 15 13 11 35 35 H 1.08996 * 109.47387 * 300.00070 * 15 13 11 36 36 H 1.09002 * 109.46950 * 60.00053 * 15 13 11 37 37 H 0.97002 * 119.99691 * 179.97438 * 19 18 16 38 38 H 1.08009 * 120.49337 * 179.73273 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1466 1.1525 0.0000 4 6 3.4684 1.1957 0.0005 5 6 4.1833 0.0002 0.0005 6 7 5.5810 0.0002 0.0005 7 6 6.2549 0.9621 0.6617 8 8 5.6507 1.8734 1.1888 9 6 7.7450 0.9067 0.7459 10 8 8.3567 0.0612 0.1263 11 7 8.4103 1.7957 1.5098 12 6 7.6687 2.7433 2.3453 13 6 9.8752 1.8143 1.5047 14 1 10.2460 1.0440 0.8284 15 6 10.3663 3.1847 1.0341 16 6 10.3858 1.5488 2.8975 17 1 9.6889 1.3824 3.7056 18 6 11.7427 1.5173 3.1399 19 7 12.5914 1.7184 2.1557 20 14 12.3757 1.1875 4.8663 21 1 12.5273 2.4742 5.5921 22 1 11.4106 0.3215 5.5902 23 1 13.6921 0.5047 4.7888 24 6 3.4685 -1.1954 -0.0057 25 7 2.1467 -1.1524 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 3.9858 2.1437 0.0009 30 1 6.0661 -0.6921 -0.4753 31 1 7.3841 3.6093 1.7475 32 1 6.7725 2.2603 2.7347 33 1 8.2975 3.0655 3.1752 34 1 11.4562 3.1988 1.0307 35 1 9.9970 3.3768 0.0267 36 1 9.9955 3.9553 1.7100 37 1 13.5460 1.6966 2.3264 38 1 3.9861 -2.1433 -0.0103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320895745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:54 Heat of formation + Delta-G solvation = -24.979666 kcal Electronic energy + Delta-G solvation = -22947.737207 eV Core-core repulsion = 19404.531793 eV Total energy + Delta-G solvation = -3543.205415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.66354 -41.60745 -39.77031 -37.68300 -36.59463 -34.86935 -34.72631 -33.04509 -31.48786 -29.19358 -27.82909 -27.33893 -26.03847 -25.94629 -23.79171 -22.44740 -21.09108 -19.36051 -18.82786 -18.50147 -18.10831 -17.88188 -17.47351 -17.08278 -16.66721 -16.30715 -16.00567 -15.30982 -14.93479 -14.79961 -14.45488 -14.28904 -14.02523 -13.63435 -13.56330 -13.38899 -13.18155 -13.01615 -12.76349 -12.71349 -12.60465 -12.45355 -12.24648 -12.13446 -12.10766 -11.96267 -11.23640 -10.65666 -10.52915 -10.28121 -9.70281 -9.51209 -8.18066 -6.34182 -0.46291 -0.06875 0.37074 1.13193 1.42724 1.44339 1.53941 2.02707 2.35649 2.50157 2.61580 2.99769 3.08014 3.10920 3.16820 3.39848 3.75423 4.10615 4.42748 4.56540 4.62618 4.70257 4.72029 4.74978 4.86541 4.87341 4.98301 5.01724 5.11974 5.34521 5.39188 5.40532 5.60547 5.72073 5.83055 5.93283 6.08999 6.38348 6.57527 6.70574 6.93391 6.96760 7.36567 8.86617 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.033964 B = 0.003208 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.208708 B = 8725.690094 C = 8776.382698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.286 3.714 3 N -0.518 5.518 4 C 0.143 3.857 5 C 0.027 3.973 6 N -0.623 5.623 7 C 0.522 3.478 8 O -0.504 6.504 9 C 0.490 3.510 10 O -0.559 6.559 11 N -0.561 5.561 12 C 0.086 3.914 13 C 0.260 3.740 14 H 0.026 0.974 15 C -0.135 4.135 16 C -0.543 4.543 17 H 0.061 0.939 18 C 0.021 3.979 19 N -0.913 5.913 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.284 1.284 24 C 0.146 3.854 25 N -0.510 5.510 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.176 0.824 30 H 0.436 0.564 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.025 0.975 36 H 0.046 0.954 37 H 0.267 0.733 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.278 -2.674 -3.893 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 N -0.232 5.232 4 C -0.024 4.024 5 C -0.072 4.072 6 N -0.272 5.272 7 C 0.305 3.695 8 O -0.379 6.379 9 C 0.272 3.728 10 O -0.440 6.440 11 N -0.291 5.291 12 C -0.056 4.056 13 C 0.159 3.841 14 H 0.044 0.956 15 C -0.193 4.193 16 C -0.582 4.582 17 H 0.079 0.921 18 C -0.179 4.179 19 N -0.551 5.551 20 Si 0.789 3.211 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.209 1.209 24 C -0.024 4.024 25 N -0.224 5.224 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.193 0.807 30 H 0.277 0.723 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -20.122 -2.408 -3.831 20.625 hybrid contribution 2.144 -0.363 0.500 2.232 sum -17.978 -2.771 -3.331 18.493 Atomic orbital electron populations 1.20674 0.83108 1.05060 1.05057 1.24015 0.99977 0.83147 0.90873 1.68396 1.09143 1.30971 1.14716 1.23585 0.89441 0.98712 0.90703 1.19603 0.84179 0.97402 1.05993 1.42816 1.03642 1.30190 1.50535 1.20211 0.88301 0.82493 0.78501 1.90711 1.69607 1.33237 1.44304 1.20037 0.87912 0.82941 0.81911 1.90718 1.69601 1.36709 1.46948 1.48233 1.08785 1.32214 1.39857 1.22027 0.96050 0.92584 0.94911 1.18822 0.73310 0.95159 0.96794 0.95621 1.21914 1.03313 0.96891 0.97231 1.21507 0.92296 1.50106 0.94270 0.92114 1.25656 0.96791 0.94424 1.01044 1.69990 1.02825 1.49373 1.32953 0.85469 0.77507 0.78550 0.79587 1.19475 1.19641 1.20939 1.23673 0.89464 0.97940 0.91277 1.68379 1.09027 1.30363 1.14649 0.88111 0.88480 0.88983 0.80720 0.72345 0.91486 0.89830 0.90878 0.90739 0.95582 0.93541 0.92412 0.77811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.31 71.23 0.73 -0.33 16 2 C 0.29 6.08 7.64 138.74 1.06 7.14 16 3 N -0.52 -12.72 10.32 -187.34 -1.93 -14.66 16 4 C 0.14 3.59 9.98 84.88 0.85 4.44 16 5 C 0.03 0.61 6.35 38.38 0.24 0.86 16 6 N -0.62 -14.75 5.35 -304.25 -1.63 -16.38 16 7 C 0.52 15.96 7.56 87.24 0.66 16.62 16 8 O -0.50 -15.83 10.86 -3.34 -0.04 -15.87 16 9 C 0.49 19.08 7.72 87.24 0.67 19.76 16 10 O -0.56 -24.52 15.83 -3.29 -0.05 -24.57 16 11 N -0.56 -23.42 2.75 -828.51 -2.28 -25.70 16 12 C 0.09 3.01 8.16 127.77 1.04 4.05 16 13 C 0.26 12.93 2.62 44.24 0.12 13.05 16 14 H 0.03 1.49 6.91 -2.39 -0.02 1.47 16 15 C -0.13 -6.25 8.97 71.98 0.65 -5.61 16 16 C -0.54 -28.58 7.95 25.60 0.20 -28.37 16 17 H 0.06 3.14 7.43 -2.91 -0.02 3.12 16 18 C 0.02 1.12 5.30 84.66 0.45 1.57 16 19 N -0.91 -50.48 11.32 21.45 0.24 -50.23 16 20 Si 0.96 41.83 29.54 68.60 2.03 43.85 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 24 C 0.15 2.75 11.26 84.88 0.96 3.71 16 25 N -0.51 -10.72 10.32 -187.33 -1.93 -12.65 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.18 4.57 6.30 -2.91 -0.02 4.55 16 30 H 0.44 8.84 8.31 -92.71 -0.77 8.07 16 31 H 0.07 2.12 8.09 -2.39 -0.02 2.10 16 32 H 0.08 2.74 5.99 -2.38 -0.01 2.72 16 33 H 0.07 2.63 7.11 -2.39 -0.02 2.61 16 34 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 35 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.05 1.98 7.67 -2.39 -0.02 1.97 16 37 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 38 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -64.44 324.28 2.38 -62.07 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.34 Total: 17.26 kcal Atomic # 6 Polarization: 29.25 SS G_CDS: 7.63 Total: 36.89 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -7.53 Total: -119.62 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.09 Total: -40.44 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -64.44 2.38 -62.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320895745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.086 kcal (2) G-P(sol) polarization free energy of solvation -64.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds