Wall clock time and date at job start Tue Mar 31 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34420 * 124.34554 * 2 1 4 4 O 1.21290 * 124.94147 * 0.40442 * 3 2 1 5 5 C 1.51279 * 110.11674 * 180.43012 * 3 2 1 6 6 C 1.54766 * 104.23324 * 16.18941 * 5 3 2 7 7 C 1.46754 * 124.35343 * 180.02562 * 2 1 3 8 8 H 1.09003 * 110.25082 * 282.04756 * 7 2 1 9 9 C 1.50708 * 110.24792 * 43.96134 * 7 2 1 10 10 O 1.21294 * 119.99384 * 17.36826 * 9 7 2 11 11 N 1.34769 * 119.99827 * 197.37047 * 9 7 2 12 12 C 1.40165 * 119.99455 * 180.02562 * 11 9 7 13 13 C 1.40401 * 125.97403 * 359.97438 * 12 11 9 14 14 C 1.35248 * 107.86816 * 179.97438 * 13 12 11 15 15 N 1.34971 * 107.85657 * 359.97438 * 14 13 12 16 16 C 1.46500 * 125.97257 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47109 * 124.99725 * 16 15 14 18 18 H 1.07995 * 120.00496 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99572 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99951 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99744 * 21 19 17 23 23 H 1.48503 * 109.47261 * 299.99924 * 21 19 17 24 24 H 1.48500 * 109.47454 * 179.97438 * 21 19 17 25 25 N 1.31224 * 125.96829 * 180.25805 * 12 11 9 26 26 H 1.09005 * 109.46695 * 269.97479 * 1 2 3 27 27 H 1.08989 * 109.47593 * 29.97731 * 1 2 3 28 28 H 1.08998 * 109.46804 * 149.98225 * 1 2 3 29 29 H 1.09000 * 110.48588 * 134.93019 * 5 3 2 30 30 H 1.08992 * 110.48705 * 257.57340 * 5 3 2 31 31 H 1.09001 * 111.04452 * 217.18490 * 6 5 3 32 32 H 1.09006 * 110.94887 * 93.38382 * 6 5 3 33 33 H 0.96996 * 120.00847 * 359.97438 * 11 9 7 34 34 H 1.08002 * 126.06828 * 359.95188 * 13 12 11 35 35 H 1.07996 * 126.06650 * 180.02562 * 14 13 12 36 36 H 1.09002 * 109.47129 * 4.99558 * 16 15 14 37 37 H 1.08998 * 109.46845 * 245.00365 * 16 15 14 38 38 H 0.97006 * 119.99995 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7944 2.2443 0.0070 5 6 3.6898 0.7380 -0.0107 6 6 3.7019 -0.7502 -0.4353 7 6 2.2932 -1.2116 -0.0005 8 1 2.3298 -1.6439 0.9994 9 6 1.7472 -2.2160 -0.9825 10 8 0.9703 -1.8615 -1.8438 11 7 2.1223 -3.5081 -0.9035 12 6 1.6149 -4.4421 -1.8171 13 6 0.7135 -4.1711 -2.8589 14 6 0.4716 -5.3312 -3.5107 15 7 1.1906 -6.3019 -2.9086 16 6 1.2224 -7.7146 -3.2951 17 6 2.6484 -8.1368 -3.5388 18 1 3.4507 -7.4240 -3.4182 19 6 2.9287 -9.4331 -3.9156 20 7 1.9516 -10.3010 -4.0629 21 14 4.6963 -9.9567 -4.2169 22 1 5.4880 -9.7649 -2.9753 23 1 5.2777 -9.1326 -5.3069 24 1 4.7286 -11.3890 -4.6076 25 7 1.8955 -5.7237 -1.8451 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3633 -0.8898 -0.5141 29 1 4.2323 1.3463 -0.7344 30 1 4.1197 0.8530 0.9843 31 1 4.4753 -1.3031 0.0978 32 1 3.8285 -0.8467 -1.5137 33 1 2.7439 -3.7915 -0.2149 34 1 0.2883 -3.2073 -3.0972 35 1 -0.1803 -5.4581 -4.3623 36 1 0.6411 -7.8552 -4.2064 37 1 0.7959 -8.3198 -2.4952 38 1 1.0337 -10.0293 -3.9060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322911438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:35 Heat of formation + Delta-G solvation = 20.992469 kcal Electronic energy + Delta-G solvation = -22735.387626 eV Core-core repulsion = 19194.175713 eV Total energy + Delta-G solvation = -3541.211913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37551 -40.56463 -39.10921 -36.49947 -35.07322 -33.80389 -33.04768 -31.11481 -29.52385 -28.78160 -26.89366 -26.27450 -23.64589 -22.85091 -21.77750 -20.68963 -19.86108 -19.61624 -17.74878 -17.26751 -17.22989 -16.61527 -16.09913 -15.66996 -15.45704 -14.92940 -14.39021 -14.20134 -14.05394 -13.84256 -13.77008 -13.28000 -13.04931 -12.82736 -12.62340 -12.50754 -12.19681 -12.11706 -11.91804 -11.55578 -11.23790 -10.87524 -10.58375 -10.27978 -10.20812 -10.12026 -9.89213 -9.09448 -8.98929 -8.64165 -8.33703 -7.65938 -6.64247 -4.38825 1.97625 2.17669 2.43513 2.68554 2.81298 3.33624 3.34905 3.48244 3.53019 3.58546 3.90008 3.98204 4.28502 4.35969 4.47667 4.58335 4.89748 5.09463 5.11729 5.24474 5.32461 5.34551 5.39848 5.48312 5.58430 5.67026 6.01110 6.08390 6.28024 6.37702 6.49000 6.66162 6.74467 7.16898 7.32187 7.60302 7.72744 7.83132 7.97232 8.26575 8.42195 8.54352 9.29525 10.73443 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031551 B = 0.003054 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.247407 B = 9164.692040 C = 9806.077503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.600 5.600 3 C 0.520 3.480 4 O -0.529 6.529 5 C -0.152 4.152 6 C -0.123 4.123 7 C 0.119 3.881 8 H 0.109 0.891 9 C 0.512 3.488 10 O -0.503 6.503 11 N -0.624 5.624 12 C 0.256 3.744 13 C -0.285 4.285 14 C 0.052 3.948 15 N -0.315 5.315 16 C 0.249 3.751 17 C -0.609 4.609 18 H 0.064 0.936 19 C 0.023 3.977 20 N -0.904 5.904 21 Si 1.077 2.923 22 H -0.285 1.285 23 H -0.286 1.286 24 H -0.280 1.280 25 N -0.298 5.298 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.413 0.587 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 17.013 9.078 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.334 5.334 3 C 0.308 3.692 4 O -0.406 6.406 5 C -0.193 4.193 6 C -0.161 4.161 7 C 0.010 3.990 8 H 0.127 0.873 9 C 0.295 3.705 10 O -0.375 6.375 11 N -0.272 5.272 12 C 0.003 3.997 13 C -0.316 4.316 14 C -0.098 4.098 15 N -0.097 5.097 16 C 0.131 3.869 17 C -0.648 4.648 18 H 0.082 0.918 19 C -0.181 4.181 20 N -0.539 5.539 21 Si 0.904 3.096 22 H -0.211 1.211 23 H -0.212 1.212 24 H -0.205 1.205 25 N -0.129 5.129 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.249 0.751 34 H 0.178 0.822 35 H 0.186 0.814 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.320 15.528 8.533 17.869 hybrid contribution -1.220 1.546 0.368 2.003 sum 1.100 17.073 8.901 19.286 Atomic orbital electron populations 1.21732 0.77118 1.04704 1.01513 1.47841 1.06901 1.05500 1.73133 1.20847 0.89234 0.84132 0.75008 1.90739 1.78714 1.20777 1.50326 1.22386 0.94775 0.96918 1.05178 1.22685 0.93775 0.95687 1.03938 1.21562 0.92041 0.86135 0.99237 0.87291 1.20621 0.81959 0.81952 0.85923 1.90668 1.33409 1.78474 1.34983 1.42390 1.46479 1.06209 1.32108 1.19076 0.98234 0.89101 0.93334 1.21512 1.08862 0.99989 1.01234 1.22586 0.98690 0.88666 0.99849 1.48817 1.30869 1.09465 1.20506 1.19786 1.00206 0.71382 0.95547 1.22086 0.91318 0.99439 1.51924 0.91821 1.25935 1.06584 0.92279 0.93343 1.70856 1.00802 1.36940 1.45285 0.83417 0.73154 0.76304 0.76763 1.21104 1.21206 1.20492 1.77360 1.20430 1.05203 1.09941 0.92761 0.90508 0.89452 0.87401 0.87231 0.87653 0.88974 0.75149 0.82203 0.81430 0.93563 0.94720 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.42 59.85 0.62 1.56 16 2 N -0.60 -6.20 3.01 -174.02 -0.52 -6.73 16 3 C 0.52 5.80 8.02 -10.86 -0.09 5.71 16 4 O -0.53 -7.99 17.60 5.55 0.10 -7.90 16 5 C -0.15 -1.00 6.86 -26.67 -0.18 -1.19 16 6 C -0.12 -0.73 6.69 -25.02 -0.17 -0.90 16 7 C 0.12 0.96 3.70 -68.16 -0.25 0.71 16 8 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 9 C 0.51 6.12 6.53 -10.98 -0.07 6.05 16 10 O -0.50 -7.70 11.64 5.55 0.06 -7.64 16 11 N -0.62 -8.13 5.45 -11.13 -0.06 -8.19 16 12 C 0.26 4.70 8.11 -154.38 -1.25 3.44 16 13 C -0.28 -5.26 9.61 -39.83 -0.38 -5.64 16 14 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 15 N -0.32 -7.03 3.66 -62.56 -0.23 -7.26 16 16 C 0.25 6.09 5.57 -5.20 -0.03 6.06 16 17 C -0.61 -16.66 9.24 -34.44 -0.32 -16.98 16 18 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 19 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 20 N -0.90 -25.78 13.65 55.43 0.76 -25.03 16 21 Si 1.08 24.24 29.90 -169.99 -5.08 19.16 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 N -0.30 -6.49 12.43 31.44 0.39 -6.10 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.85 7.93 -51.94 -0.41 0.44 16 28 H 0.09 0.98 5.94 -51.93 -0.31 0.68 16 29 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.67 7.91 -51.93 -0.41 0.26 16 33 H 0.41 4.06 8.82 -40.82 -0.36 3.70 16 34 H 0.16 2.86 5.92 -52.49 -0.31 2.54 16 35 H 0.17 2.60 8.06 -52.49 -0.42 2.17 16 36 H 0.05 1.10 7.94 -51.93 -0.41 0.68 16 37 H 0.04 0.88 8.01 -51.93 -0.42 0.47 16 38 H 0.27 7.44 7.22 -40.82 -0.29 7.15 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -35.41 326.56 -6.75 -42.16 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.67 Total: 2.46 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.41 Total: 0.16 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.33 Total: -53.31 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.16 Total: -15.53 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.08 Total: 19.16 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.41 -6.75 -42.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322911438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.150 kcal (2) G-P(sol) polarization free energy of solvation -35.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds