Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47221 * 2 1 4 4 H 1.08997 * 109.47159 * 56.24853 * 3 2 1 5 5 C 1.50707 * 109.46921 * 176.24629 * 3 2 1 6 6 H 1.08001 * 119.99497 * 114.26390 * 5 3 2 7 7 C 1.37878 * 119.99995 * 294.26060 * 5 3 2 8 8 N 1.31512 * 119.99478 * 155.57310 * 7 5 3 9 9 Si 1.86794 * 119.99925 * 335.58022 * 7 5 3 10 10 H 1.48505 * 109.47103 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.47191 * 299.99603 * 9 7 5 12 12 H 1.48500 * 109.47738 * 59.99749 * 9 7 5 13 13 N 1.46499 * 109.46986 * 296.24257 * 3 2 1 14 14 C 1.34782 * 119.99821 * 85.00529 * 13 3 2 15 15 O 1.21358 * 119.99862 * 359.97438 * 14 13 3 16 16 C 1.49354 * 119.99958 * 179.97438 * 14 13 3 17 17 O 1.21371 * 120.00334 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99565 * 179.97438 * 16 14 13 19 19 C 1.39776 * 119.99493 * 184.27176 * 18 16 14 20 20 C 1.39290 * 120.88071 * 324.34005 * 19 18 16 21 21 N 1.32253 * 119.01161 * 179.76861 * 20 19 18 22 22 C 1.31807 * 120.89687 * 0.51410 * 21 20 19 23 23 C 1.50701 * 119.03014 * 179.74966 * 22 21 20 24 24 N 1.31801 * 121.93397 * 359.73690 * 22 21 20 25 25 C 1.32249 * 120.90241 * 359.97438 * 24 22 21 26 26 H 1.09000 * 109.47204 * 300.00168 * 1 2 3 27 27 H 1.09005 * 109.47161 * 59.99716 * 1 2 3 28 28 H 1.08997 * 109.47778 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47204 * 239.99832 * 2 1 3 30 30 H 1.08996 * 109.47392 * 120.00199 * 2 1 3 31 31 H 0.96990 * 120.00626 * 354.96599 * 8 7 5 32 32 H 0.97001 * 120.00341 * 264.99952 * 13 3 2 33 33 H 0.96999 * 120.00230 * 4.26941 * 18 16 14 34 34 H 1.08003 * 120.49313 * 359.97438 * 20 19 18 35 35 H 1.09000 * 109.47534 * 269.98185 * 23 22 21 36 36 H 1.09003 * 109.46966 * 29.98582 * 23 22 21 37 37 H 1.09002 * 109.46449 * 149.98227 * 23 22 21 38 38 H 1.08004 * 120.49747 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9754 0.8544 5 6 3.5442 1.4434 0.0930 6 1 4.1360 1.8094 -0.7329 7 6 4.1647 0.9771 1.2325 8 7 5.3980 0.5245 1.1712 9 14 3.2537 0.9881 2.8632 10 1 4.1343 0.4401 3.9260 11 1 2.8716 2.3813 3.2074 12 1 2.0311 0.1525 2.7530 13 7 1.6270 2.1064 -1.2389 14 6 0.4076 2.6742 -1.3249 15 8 -0.3483 2.6350 -0.3763 16 6 -0.0133 3.3516 -2.5877 17 8 0.7428 3.3913 -3.5363 18 7 -1.2329 3.9189 -2.6739 19 6 -1.6615 4.4741 -3.8829 20 6 -0.7653 5.1228 -4.7292 21 7 -1.2099 5.6307 -5.8665 22 6 -2.4824 5.5379 -6.1974 23 6 -2.9445 6.1366 -7.5009 24 7 -3.3624 4.9367 -5.4220 25 6 -2.9972 4.3980 -4.2708 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.8454 0.4503 0.3139 32 1 2.2310 2.1376 -1.9972 33 1 -1.8131 3.9418 -1.8969 34 1 0.2779 5.2069 -4.4621 35 1 -3.2450 7.1718 -7.3391 36 1 -2.1302 6.1036 -8.2248 37 1 -3.7925 5.5674 -7.8817 38 1 -3.7237 3.9065 -3.6406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324357119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = -44.918255 kcal Electronic energy + Delta-G solvation = -22829.214773 eV Core-core repulsion = 19285.144757 eV Total energy + Delta-G solvation = -3544.070017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.67331 -41.61017 -39.96044 -37.42270 -36.69463 -34.88648 -34.52536 -33.16993 -33.07664 -29.55610 -29.02207 -26.12081 -25.96094 -24.32410 -23.57040 -22.12543 -21.37956 -20.61638 -19.40918 -18.82524 -18.26786 -17.84282 -17.56966 -17.00450 -16.87017 -16.19749 -15.67629 -15.43077 -15.14878 -14.86799 -14.55608 -14.49776 -14.31001 -14.04977 -13.65626 -13.55439 -13.22076 -12.99554 -12.64972 -12.61032 -12.47747 -12.28040 -12.20314 -12.00250 -11.78130 -11.56010 -11.22872 -10.85424 -10.45537 -10.37014 -10.04433 -9.69449 -8.84043 -6.44942 -0.50019 -0.09698 0.32108 1.10490 1.49145 1.52817 1.72539 2.01452 2.44569 2.51362 2.58752 2.93506 2.96655 3.05100 3.28659 3.39653 3.72584 4.08623 4.28682 4.37302 4.48909 4.53411 4.61762 4.72718 4.78040 4.84303 5.05363 5.08275 5.13146 5.22125 5.35818 5.38924 5.50715 5.59848 5.71932 5.80714 5.99255 6.35450 6.48472 6.59873 6.93607 6.94360 7.28542 8.53847 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.035803 B = 0.003266 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.861887 B = 8572.176870 C = 8956.970783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.254 3.746 4 H 0.040 0.960 5 C -0.631 4.631 6 H 0.037 0.963 7 C 0.005 3.995 8 N -0.916 5.916 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.245 1.245 13 N -0.669 5.669 14 C 0.502 3.498 15 O -0.534 6.534 16 C 0.518 3.482 17 O -0.521 6.521 18 N -0.619 5.619 19 C 0.025 3.975 20 C 0.141 3.859 21 N -0.520 5.520 22 C 0.288 3.712 23 C -0.082 4.082 24 N -0.510 5.510 25 C 0.150 3.850 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.260 0.740 32 H 0.408 0.592 33 H 0.439 0.561 34 H 0.170 0.830 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.426 7.775 -10.527 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.172 4.172 3 C 0.150 3.850 4 H 0.057 0.943 5 C -0.669 4.669 6 H 0.056 0.944 7 C -0.198 4.198 8 N -0.549 5.549 9 Si 0.887 3.113 10 H -0.210 1.210 11 H -0.194 1.194 12 H -0.169 1.169 13 N -0.318 5.318 14 C 0.282 3.718 15 O -0.413 6.413 16 C 0.301 3.699 17 O -0.396 6.396 18 N -0.268 5.268 19 C -0.074 4.074 20 C -0.027 4.027 21 N -0.235 5.235 22 C 0.022 3.978 23 C -0.140 4.140 24 N -0.224 5.224 25 C -0.019 4.019 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.243 0.757 33 H 0.281 0.719 34 H 0.187 0.813 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -19.487 7.797 -9.753 23.145 hybrid contribution 1.147 -0.094 -0.871 1.444 sum -18.340 7.703 -10.625 22.551 Atomic orbital electron populations 1.21801 0.94956 1.00910 1.01612 1.22184 0.95815 0.97782 1.01451 1.18980 0.93516 0.89796 0.82707 0.94268 1.22150 0.91271 1.48716 1.04733 0.94450 1.26843 0.96261 0.91017 1.05636 1.70959 1.15182 1.39829 1.28964 0.83776 0.76078 0.78744 0.72734 1.20997 1.19398 1.16869 1.46062 1.14702 1.52908 1.18103 1.19769 0.83451 0.80821 0.87762 1.90740 1.52413 1.59656 1.38442 1.20426 0.82360 0.78851 0.88280 1.90767 1.52189 1.57777 1.38847 1.42756 1.17082 1.54688 1.12283 1.19581 0.96913 1.00512 0.90369 1.23519 1.01218 0.88937 0.88983 1.68381 1.17752 1.20126 1.17266 1.24017 0.84680 0.91689 0.97434 1.20686 1.02974 1.01703 0.88602 1.68384 1.38284 1.10824 1.04867 1.23740 0.92913 0.92937 0.92310 0.92897 0.93571 0.92299 0.93096 0.92188 0.93042 0.75693 0.71926 0.81336 0.88060 0.89115 0.88332 0.77332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 8.49 71.98 0.61 -4.01 16 2 C -0.13 -5.42 5.36 30.59 0.16 -5.25 16 3 C 0.25 11.24 1.85 44.25 0.08 11.32 16 4 H 0.04 1.82 6.13 -2.39 -0.01 1.80 16 5 C -0.63 -33.30 8.94 25.60 0.23 -33.08 16 6 H 0.04 2.14 7.96 -2.91 -0.02 2.11 16 7 C 0.01 0.28 5.20 84.66 0.44 0.72 16 8 N -0.92 -53.97 13.70 21.45 0.29 -53.68 16 9 Si 1.07 47.22 26.51 68.60 1.82 49.04 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 12 H -0.24 -9.70 6.17 99.48 0.61 -9.09 16 13 N -0.67 -25.69 5.00 -447.52 -2.24 -27.92 16 14 C 0.50 16.75 6.40 87.24 0.56 17.31 16 15 O -0.53 -18.49 13.61 -3.27 -0.04 -18.53 16 16 C 0.52 14.65 7.74 87.24 0.68 15.33 16 17 O -0.52 -16.85 14.03 -3.31 -0.05 -16.90 16 18 N -0.62 -12.95 5.35 -304.24 -1.63 -14.57 16 19 C 0.03 0.53 6.33 38.38 0.24 0.78 16 20 C 0.14 3.55 9.97 84.88 0.85 4.39 16 21 N -0.52 -12.87 10.32 -187.34 -1.93 -14.81 16 22 C 0.29 5.99 7.64 138.74 1.06 7.05 16 23 C -0.08 -1.05 10.31 71.24 0.73 -0.31 16 24 N -0.51 -10.12 10.32 -187.33 -1.93 -12.05 16 25 C 0.15 2.57 11.26 84.88 0.96 3.53 16 26 H 0.05 1.83 7.77 -2.39 -0.02 1.81 16 27 H 0.05 1.53 5.67 -2.38 -0.01 1.52 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 2.53 5.58 -2.39 -0.01 2.52 16 31 H 0.26 15.47 8.73 -92.72 -0.81 14.66 16 32 H 0.41 15.48 7.99 -92.71 -0.74 14.74 16 33 H 0.44 7.09 8.30 -92.71 -0.77 6.32 16 34 H 0.17 4.57 6.40 -2.91 -0.02 4.55 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.21 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -65.02 322.04 0.37 -64.65 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: -0.51 Total: 27.00 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 6.60 Total: 17.77 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -7.44 Total: -123.03 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.09 Total: -35.43 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.82 Total: 49.04 kcal Total: -65.02 0.37 -64.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324357119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.727 kcal (2) G-P(sol) polarization free energy of solvation -65.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds