Wall clock time and date at job start Tue Mar 31 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35211 * 126.06475 * 2 1 4 4 C 1.40451 * 107.86992 * 179.88161 * 3 2 1 5 5 N 1.39937 * 125.98351 * 180.11471 * 4 3 2 6 6 C 1.34778 * 119.99735 * 0.29795 * 5 4 3 7 7 O 1.21383 * 119.99738 * 359.97438 * 6 5 4 8 8 C 1.49338 * 119.99939 * 179.97438 * 6 5 4 9 9 O 1.21361 * 120.00370 * 359.97438 * 8 6 5 10 10 N 1.34778 * 119.99939 * 179.97438 * 8 6 5 11 11 C 1.46501 * 120.00145 * 180.02562 * 10 8 6 12 12 C 1.53002 * 117.49891 * 223.74986 * 11 10 8 13 13 C 1.53000 * 117.50108 * 155.08576 * 11 10 8 14 14 N 1.31274 * 108.03847 * 0.39243 * 4 3 2 15 15 N 1.34990 * 126.06037 * 180.31391 * 2 1 3 16 16 C 1.46501 * 125.97036 * 359.94115 * 15 2 1 17 17 C 1.50699 * 109.46847 * 90.00323 * 16 15 2 18 18 H 1.08000 * 120.00498 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99917 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99555 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00112 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47147 * 90.00199 * 21 19 17 23 23 H 1.48503 * 109.46905 * 209.99890 * 21 19 17 24 24 H 1.48496 * 109.46944 * 330.00243 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.68621 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68721 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68702 * 1 2 3 28 28 H 1.08002 * 126.06146 * 0.02562 * 3 2 1 29 29 H 0.96997 * 120.00340 * 180.29048 * 5 4 3 30 30 H 0.97000 * 119.99851 * 0.02562 * 10 8 6 31 31 H 1.09000 * 115.54862 * 9.41497 * 11 10 8 32 32 H 1.08993 * 117.49906 * 359.97438 * 12 11 10 33 33 H 1.08996 * 117.50113 * 145.02304 * 12 11 10 34 34 H 1.09000 * 117.50070 * 214.97927 * 13 11 10 35 35 H 1.09002 * 117.49748 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.46496 * 209.99543 * 16 15 2 37 37 H 1.08995 * 109.47576 * 329.99798 * 16 15 2 38 38 H 0.97003 * 119.99589 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3030 1.0930 0.0000 4 6 3.6373 0.6544 0.0028 5 7 4.7720 1.4734 0.0059 6 6 4.6352 2.8142 0.0126 7 8 3.5278 3.3113 0.0154 8 6 5.8460 3.6883 0.0166 9 8 6.9532 3.1914 0.0142 10 7 5.7093 5.0291 0.0227 11 6 6.8971 5.8866 0.0260 12 6 6.8965 7.0907 0.9700 13 6 6.7492 7.3007 -0.5392 14 7 3.6337 -0.6583 -0.0042 15 7 2.3016 -1.0912 -0.0060 16 6 1.8497 -2.4848 -0.0124 17 6 1.6936 -2.9556 -1.4354 18 1 1.9091 -2.2840 -2.2532 19 6 1.2757 -4.2440 -1.6933 20 7 1.0138 -5.0621 -0.6975 21 14 1.0816 -4.8275 -3.4572 22 1 2.3621 -5.4134 -3.9285 23 1 0.0125 -5.8562 -3.5234 24 1 0.7158 -3.6769 -4.3217 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5090 28 1 1.9715 2.1209 0.0004 29 1 5.6569 1.0762 0.0034 30 1 4.8243 5.4263 0.0249 31 1 7.8460 5.3759 -0.1376 32 1 6.0122 7.2451 1.5882 33 1 7.8451 7.3725 1.4269 34 1 7.6010 7.7204 -1.0744 35 1 5.7682 7.5928 -0.9139 36 1 2.5847 -3.1074 0.4977 37 1 0.8915 -2.5584 0.5019 38 1 0.7195 -5.9684 -0.8789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324699031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:15 Heat of formation + Delta-G solvation = 16.817655 kcal Electronic energy + Delta-G solvation = -22235.883419 eV Core-core repulsion = 18694.490472 eV Total energy + Delta-G solvation = -3541.392947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.53643 -41.61293 -39.87741 -38.18482 -36.59624 -35.37378 -33.91366 -33.08631 -32.67795 -28.90812 -27.92512 -26.91838 -24.84774 -23.27216 -23.15251 -22.07532 -21.42550 -21.04844 -19.28652 -18.79412 -18.30340 -17.60376 -17.21216 -17.09049 -16.81341 -16.25279 -15.95572 -15.49071 -15.41405 -15.12736 -14.77121 -14.33435 -13.84577 -13.76695 -13.65734 -13.64635 -13.17522 -12.98566 -12.70628 -12.63214 -12.62406 -12.38340 -12.25773 -12.16716 -11.59997 -11.48356 -11.44305 -10.84945 -10.74144 -9.97104 -9.67426 -9.25218 -8.34204 -6.51369 -0.01489 0.79285 1.05757 1.37819 1.39195 1.50040 1.66630 1.77853 2.19449 2.32967 2.52140 2.95156 2.96336 3.16457 3.74294 3.79818 4.02381 4.06181 4.09430 4.41335 4.63341 4.64693 4.78830 4.79670 4.81566 4.89072 4.93421 5.03902 5.07121 5.18818 5.22733 5.25806 5.52522 5.77531 5.79293 5.81082 6.12831 6.21727 6.52370 6.60326 6.74368 6.92571 7.19636 8.72299 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.002829 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.034499 B = 9894.023908 C =10181.461468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.091 3.909 3 C -0.292 4.292 4 C 0.265 3.735 5 N -0.599 5.599 6 C 0.518 3.482 7 O -0.506 6.506 8 C 0.528 3.472 9 O -0.536 6.536 10 N -0.655 5.655 11 C 0.043 3.957 12 C -0.178 4.178 13 C -0.168 4.168 14 N -0.353 5.353 15 N -0.338 5.338 16 C 0.274 3.726 17 C -0.554 4.554 18 H 0.050 0.950 19 C 0.023 3.977 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.270 1.270 24 H -0.269 1.269 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.176 0.824 29 H 0.429 0.571 30 H 0.423 0.577 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.025 0.975 37 H 0.056 0.944 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.194 23.697 1.994 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.039 4.039 3 C -0.323 4.323 4 C 0.011 3.989 5 N -0.249 5.249 6 C 0.299 3.701 7 O -0.379 6.379 8 C 0.308 3.692 9 O -0.413 6.413 10 N -0.307 5.307 11 C -0.061 4.061 12 C -0.216 4.216 13 C -0.206 4.206 14 N -0.183 5.183 15 N -0.121 5.121 16 C 0.155 3.845 17 C -0.592 4.592 18 H 0.068 0.932 19 C -0.178 4.178 20 N -0.555 5.555 21 Si 0.795 3.205 22 H -0.202 1.202 23 H -0.195 1.195 24 H -0.193 1.193 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.193 0.807 29 H 0.267 0.733 30 H 0.261 0.739 31 H 0.150 0.850 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.127 0.873 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.824 22.375 2.048 23.482 hybrid contribution -0.315 -0.316 -0.672 0.806 sum 6.509 22.060 1.377 23.041 Atomic orbital electron populations 1.20537 0.84955 1.04623 1.04314 1.21820 0.96860 0.86206 0.99053 1.21461 0.89167 1.00346 1.21276 1.19196 0.88228 0.89323 1.02132 1.42098 1.08123 1.04703 1.69950 1.20294 0.90177 0.82055 0.77579 1.90691 1.26576 1.73948 1.46690 1.19394 0.87727 0.83952 0.78120 1.90787 1.26608 1.74668 1.49192 1.45039 1.11300 1.03714 1.70618 1.21923 0.89440 0.86540 1.08238 1.23568 1.05223 0.99302 0.93553 1.23541 1.05297 0.95207 0.96559 1.77245 1.00374 1.09871 1.30836 1.48877 1.01562 1.07799 1.53878 1.19298 0.95059 0.72253 0.97875 1.21434 1.47624 0.98425 0.91736 0.93162 1.25725 0.93943 0.95889 1.02229 1.69999 1.45018 1.07418 1.33097 0.85361 0.78214 0.78250 0.78707 1.20184 1.19465 1.19300 0.88665 0.91410 0.87540 0.80657 0.73291 0.73874 0.84978 0.87661 0.86471 0.86140 0.87264 0.95737 0.92612 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.71 9.89 71.24 0.70 -2.00 16 2 C 0.09 3.70 6.92 41.38 0.29 3.99 16 3 C -0.29 -11.35 9.51 22.11 0.21 -11.14 16 4 C 0.26 10.77 8.10 133.40 1.08 11.85 16 5 N -0.60 -19.61 5.43 -308.90 -1.68 -21.28 16 6 C 0.52 14.73 7.85 87.23 0.69 15.41 16 7 O -0.51 -15.25 13.60 -3.35 -0.05 -15.29 16 8 C 0.53 12.64 7.89 87.23 0.69 13.33 16 9 O -0.54 -15.09 16.04 -3.28 -0.05 -15.14 16 10 N -0.66 -11.15 5.56 -443.97 -2.47 -13.62 16 11 C 0.04 0.58 6.43 44.99 0.29 0.87 16 12 C -0.18 -1.52 10.46 30.62 0.32 -1.20 16 13 C -0.17 -1.31 10.46 30.62 0.32 -0.99 16 14 N -0.35 -16.71 12.59 -54.54 -0.69 -17.40 16 15 N -0.34 -16.23 3.59 -338.46 -1.22 -17.44 16 16 C 0.27 14.37 5.81 85.63 0.50 14.87 16 17 C -0.55 -30.89 9.39 25.60 0.24 -30.65 16 18 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 19 C 0.02 1.27 5.46 84.66 0.46 1.73 16 20 N -0.92 -51.59 13.29 21.45 0.28 -51.30 16 21 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 25 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.07 2.37 7.71 -2.39 -0.02 2.35 16 27 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 28 H 0.18 6.20 5.91 -2.91 -0.02 6.18 16 29 H 0.43 12.92 8.29 -92.71 -0.77 12.15 16 30 H 0.42 5.89 8.30 -92.71 -0.77 5.12 16 31 H 0.13 2.07 7.40 -2.39 -0.02 2.06 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 2.87 7.65 -2.39 -0.02 2.85 16 38 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -68.31 337.51 1.53 -66.78 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.42 Total: 23.65 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 5.78 Total: 16.08 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.76 Total: -121.05 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.10 Total: -30.44 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -68.31 1.53 -66.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324699031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.603 kcal (2) G-P(sol) polarization free energy of solvation -68.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds