Wall clock time and date at job start Tue Mar 31 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47345 * 2 1 4 4 N 1.31801 * 119.03563 * 269.72934 * 3 2 1 5 5 C 1.32248 * 120.90041 * 179.75469 * 4 3 2 6 6 C 1.39294 * 119.00737 * 0.51197 * 5 4 3 7 7 N 1.39774 * 120.87761 * 179.72960 * 6 5 4 8 8 C 1.34783 * 119.99856 * 325.45475 * 7 6 5 9 9 O 1.21376 * 119.99616 * 5.26385 * 8 7 6 10 10 C 1.49353 * 119.99852 * 185.26121 * 8 7 6 11 11 O 1.21353 * 120.00389 * 359.65568 * 10 8 7 12 12 N 1.34781 * 119.99403 * 179.65463 * 10 8 7 13 13 C 1.46493 * 120.00627 * 354.33585 * 12 10 8 14 14 C 1.46504 * 119.99329 * 174.34054 * 12 10 8 15 15 C 1.50703 * 109.47443 * 90.00069 * 14 12 10 16 16 H 1.07997 * 119.99390 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00182 * 179.97438 * 15 14 12 18 18 N 1.31519 * 119.99813 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47235 * 59.99752 * 19 17 15 21 21 H 1.48498 * 109.47150 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46990 * 299.99699 * 19 17 15 23 23 C 1.39296 * 118.25088 * 359.74517 * 6 5 4 24 24 N 1.31811 * 119.02808 * 89.99938 * 3 2 1 25 25 H 1.08998 * 109.47334 * 299.99360 * 1 2 3 26 26 H 1.09000 * 109.47468 * 59.99784 * 1 2 3 27 27 H 1.09008 * 109.47518 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47164 * 240.00145 * 2 1 3 29 29 H 1.09005 * 109.47272 * 120.00664 * 2 1 3 30 30 H 1.08002 * 120.49824 * 180.25651 * 5 4 3 31 31 H 0.97001 * 120.00763 * 145.45624 * 7 6 5 32 32 H 1.09000 * 109.47123 * 84.15821 * 13 12 10 33 33 H 1.08997 * 109.47522 * 204.15960 * 13 12 10 34 34 H 1.09002 * 109.46989 * 324.16296 * 13 12 10 35 35 H 1.09005 * 109.46757 * 209.99671 * 14 12 10 36 36 H 1.09001 * 109.47363 * 329.99494 * 14 12 10 37 37 H 0.96996 * 119.99583 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.49930 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2507 2.0221 -1.1523 5 6 2.6869 3.2698 -1.1954 6 6 2.9253 3.9436 0.0002 7 7 3.3921 5.2611 0.0003 8 6 4.2413 5.6753 -0.9610 9 8 4.5259 4.9347 -1.8795 10 6 4.8320 7.0455 -0.8958 11 8 4.5425 7.7882 0.0192 12 7 5.6866 7.4570 -1.8533 13 6 6.1328 6.5213 -2.8884 14 6 6.1694 8.8402 -1.8589 15 6 7.4334 8.9345 -1.0437 16 1 7.8365 8.0523 -0.5687 17 6 8.0751 10.1468 -0.9044 18 7 7.5844 11.2209 -1.4833 19 14 9.6415 10.2637 0.1066 20 1 10.6767 9.3752 -0.4799 21 1 10.1315 11.6655 0.0998 22 1 9.3618 9.8434 1.5031 23 6 2.6866 3.2699 1.1957 24 7 2.2455 2.0238 1.1525 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 2.8598 3.7576 -2.1434 31 1 3.1049 5.8775 0.6920 32 1 5.3949 6.4872 -3.6899 33 1 7.0903 6.8532 -3.2899 34 1 6.2452 5.5273 -2.4555 35 1 6.3742 9.1494 -2.8839 36 1 5.4095 9.4920 -1.4277 37 1 8.0361 12.0737 -1.3856 38 1 2.8595 3.7575 2.1437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325268265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:37 Heat of formation + Delta-G solvation = -9.221979 kcal Electronic energy + Delta-G solvation = -22580.836038 eV Core-core repulsion = 19038.313928 eV Total energy + Delta-G solvation = -3542.522110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.64746 -40.35084 -38.22248 -36.18615 -34.94151 -33.92963 -33.68134 -32.65091 -29.91313 -28.14550 -26.44887 -25.40719 -25.01104 -24.08745 -22.51371 -21.60842 -20.00600 -18.08910 -17.72532 -17.01730 -16.97895 -16.68103 -15.91051 -15.56811 -15.25150 -14.97660 -14.47528 -14.37060 -14.10901 -13.75655 -13.68360 -13.24937 -12.74578 -12.50451 -12.26612 -12.15523 -12.09795 -11.51607 -11.38279 -11.33566 -11.21883 -11.08898 -10.99726 -10.84112 -10.63470 -10.26971 -9.77979 -9.51835 -8.98121 -8.69009 -8.53820 -7.92061 -6.15553 -4.21244 0.51778 0.85550 1.68198 2.40881 3.26910 3.31148 3.33706 3.43143 3.57260 3.71197 3.82930 3.95337 4.27155 4.35839 4.57451 4.69602 4.83503 4.93714 5.01525 5.19373 5.27994 5.52228 5.57604 5.71572 5.77197 5.85104 5.92022 6.02879 6.25013 6.38687 6.63536 6.76367 6.90120 7.16875 7.25424 7.61700 7.79636 7.87757 8.04474 8.06871 8.48004 8.82353 9.43984 10.92676 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.037032 B = 0.002973 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.915808 B = 9417.398240 C = 9652.669634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.295 3.705 4 N -0.497 5.497 5 C 0.151 3.849 6 C 0.041 3.959 7 N -0.642 5.642 8 C 0.511 3.489 9 O -0.501 6.501 10 C 0.495 3.505 11 O -0.519 6.519 12 N -0.559 5.559 13 C 0.077 3.923 14 C 0.243 3.757 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.131 3.869 24 N -0.498 5.498 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.184 0.816 31 H 0.427 0.573 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.266 0.734 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.732 -17.676 1.654 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C 0.027 3.973 4 N -0.211 5.211 5 C -0.018 4.018 6 C -0.058 4.058 7 N -0.290 5.290 8 C 0.295 3.705 9 O -0.375 6.375 10 C 0.275 3.725 11 O -0.396 6.396 12 N -0.291 5.291 13 C -0.066 4.066 14 C 0.124 3.876 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.729 3.271 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.038 4.038 24 N -0.211 5.211 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.201 0.799 31 H 0.266 0.734 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.884 -18.453 1.400 21.994 hybrid contribution 1.208 1.472 0.869 2.093 sum -10.677 -16.981 2.269 20.187 Atomic orbital electron populations 1.21693 0.93647 1.02418 1.02421 1.20309 0.96685 0.87992 1.04176 1.23221 0.92919 0.97616 0.83525 1.68319 1.12942 1.09666 1.30159 1.23630 0.89892 0.89731 0.98500 1.19636 1.01650 0.87546 0.97012 1.43107 1.44970 1.09792 1.31173 1.21180 0.78418 0.89387 0.81544 1.90683 1.58222 1.56200 1.32362 1.19376 0.82553 0.86039 0.84510 1.90763 1.61382 1.54908 1.32547 1.48155 1.41008 1.14623 1.25291 1.22065 0.99975 0.93678 0.90877 1.19550 0.95437 0.74259 0.98306 1.21316 1.08434 0.94971 1.32285 0.92285 1.24928 0.97989 0.95355 0.95675 1.69913 1.39995 0.99693 1.43546 0.86502 0.82788 0.77095 0.80736 1.20143 1.21071 1.20090 1.23181 0.93661 0.89639 0.97333 1.68221 1.13314 1.09182 1.30425 0.92344 0.92299 0.91497 0.89190 0.89266 0.79927 0.73352 0.92940 0.90874 0.90077 0.93982 0.93458 0.92455 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.89 37.15 0.37 -0.67 16 2 C -0.05 -0.44 6.37 -27.89 -0.18 -0.62 16 3 C 0.29 3.45 6.89 -157.18 -1.08 2.37 16 4 N -0.50 -6.42 10.32 -10.56 -0.11 -6.53 16 5 C 0.15 1.96 9.99 -16.98 -0.17 1.79 16 6 C 0.04 0.50 6.35 -83.45 -0.53 -0.03 16 7 N -0.64 -8.09 5.35 -10.11 -0.05 -8.15 16 8 C 0.51 8.03 7.63 -11.63 -0.09 7.94 16 9 O -0.50 -8.04 10.73 5.47 0.06 -7.98 16 10 C 0.50 9.73 7.72 -11.63 -0.09 9.64 16 11 O -0.52 -11.52 16.12 5.49 0.09 -11.43 16 12 N -0.56 -11.64 2.86 -183.50 -0.52 -12.17 16 13 C 0.08 1.32 9.27 59.84 0.55 1.87 16 14 C 0.24 6.07 5.09 -5.19 -0.03 6.04 16 15 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 16 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 19 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.13 1.42 11.26 -16.98 -0.19 1.22 16 24 N -0.50 -5.87 10.32 -10.56 -0.11 -5.98 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.18 2.40 6.28 -52.49 -0.33 2.07 16 31 H 0.43 4.71 8.30 -40.82 -0.34 4.37 16 32 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 34 H 0.08 1.34 5.84 -51.93 -0.30 1.03 16 35 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 36 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -31.55 332.20 -6.48 -38.04 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.70 Total: 1.48 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: -1.86 Total: 16.34 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.06 Total: -57.70 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.15 Total: -19.41 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.55 -6.48 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325268265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.816 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds