Wall clock time and date at job start Tue Mar 31 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 5 5 O 1.21303 * 119.99475 * 120.00030 * 4 2 1 6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1 7 7 C 1.40597 * 119.99795 * 180.27733 * 6 4 2 8 8 C 1.40643 * 126.08168 * 359.41144 * 7 6 4 9 9 N 1.30911 * 108.38401 * 179.87963 * 8 7 6 10 10 N 1.40064 * 108.40558 * 0.38006 * 9 8 7 11 11 C 1.37328 * 126.06846 * 179.78948 * 10 9 8 12 12 H 1.07997 * 120.00374 * 179.97438 * 11 10 9 13 13 C 1.38992 * 119.99947 * 359.95744 * 11 10 9 14 14 N 1.31297 * 120.00053 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99902 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46620 * 90.00413 * 15 13 11 17 17 H 1.48499 * 109.47103 * 210.00422 * 15 13 11 18 18 H 1.48493 * 109.47079 * 330.00561 * 15 13 11 19 19 C 1.35681 * 126.07974 * 179.72445 * 7 6 4 20 20 C 1.52990 * 109.47358 * 239.99894 * 2 1 3 21 21 H 1.08996 * 110.22001 * 184.52267 * 20 2 1 22 22 C 1.54480 * 110.24719 * 62.49705 * 20 2 1 23 23 C 1.54628 * 101.76836 * 266.41605 * 22 20 2 24 24 C 1.51277 * 104.19657 * 335.20504 * 23 22 20 25 25 O 1.21276 * 124.94252 * 196.23042 * 24 23 22 26 26 N 1.34423 * 110.11564 * 16.24658 * 24 23 22 27 27 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 29 29 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 31 31 H 1.07995 * 125.81010 * 0.03089 * 8 7 6 32 32 H 0.96995 * 119.99724 * 179.97438 * 14 13 11 33 33 H 1.07998 * 126.24366 * 359.91807 * 19 7 6 34 34 H 1.08996 * 110.96787 * 24.53897 * 22 20 2 35 35 H 1.09005 * 110.96900 * 148.30104 * 22 20 2 36 36 H 1.09000 * 110.48560 * 216.52115 * 23 22 20 37 37 H 1.09005 * 110.59145 * 93.93670 * 23 22 20 38 38 H 0.96998 * 124.34953 * 180.38793 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7298 -1.6966 1.1192 6 7 1.7068 -0.2498 2.4546 7 6 2.1803 -0.9092 3.6026 8 6 2.9878 -2.0605 3.6227 9 7 3.2249 -2.3768 4.8707 10 7 2.5737 -1.4489 5.6935 11 6 2.5780 -1.4430 7.0667 12 1 2.0400 -0.6770 7.6052 13 6 3.2747 -2.4232 7.7637 14 7 3.9290 -3.3545 7.1091 15 14 3.2812 -2.4148 9.6317 16 1 2.1393 -3.2201 10.1342 17 1 4.5542 -2.9993 10.1248 18 1 3.1554 -1.0184 10.1207 19 6 1.9345 -0.5513 4.8881 20 6 2.0401 -0.7212 -1.2491 21 1 3.1270 -0.7987 -1.2220 22 6 1.5873 0.0285 -2.5216 23 6 0.2753 -0.7105 -2.8731 24 6 0.4404 -2.0777 -2.2469 25 8 -0.2300 -3.0513 -2.5178 26 7 1.4381 -2.0562 -1.3462 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 1.1493 0.5390 2.5436 31 1 3.3525 -2.5917 2.7561 32 1 4.4155 -4.0383 7.5955 33 1 1.3420 0.2905 5.2144 34 1 1.3974 1.0803 -2.3079 35 1 2.3216 -0.0794 -3.3200 36 1 0.1638 -0.7968 -3.9539 37 1 -0.5826 -0.1945 -2.4420 38 1 1.7232 -2.8242 -0.8269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329211720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:16 Heat of formation + Delta-G solvation = 10.677720 kcal Electronic energy + Delta-G solvation = -23146.837591 eV Core-core repulsion = 19605.178396 eV Total energy + Delta-G solvation = -3541.659194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01903 -39.79129 -38.61196 -36.72574 -34.29020 -33.34251 -32.37766 -31.35983 -30.22510 -27.89556 -27.58988 -25.10122 -23.95197 -21.75538 -20.89797 -20.61652 -19.76005 -19.37738 -17.52512 -17.28519 -16.96764 -16.12191 -15.53715 -15.40739 -15.20240 -14.64010 -14.23194 -13.92458 -13.82298 -13.46624 -13.25050 -13.14024 -12.90846 -12.82890 -12.44942 -12.12353 -11.71777 -11.59706 -11.40608 -11.33329 -11.26343 -11.07460 -10.94674 -10.55152 -10.19376 -9.89781 -9.24529 -9.18907 -9.05074 -8.82395 -8.08468 -6.73107 -6.57692 -4.25133 2.56947 2.78144 3.00940 3.03425 3.08769 3.40666 3.48702 3.65337 3.84186 4.21563 4.27378 4.38943 4.42167 4.67650 4.76320 4.87404 4.98077 5.00570 5.03451 5.30051 5.35077 5.45763 5.51831 5.61277 5.68214 5.80790 5.99771 6.21166 6.42908 6.83086 6.87549 6.92778 7.08101 7.12263 7.21890 7.83533 8.13605 8.25536 8.27865 8.60189 8.81175 9.35488 9.64776 10.38288 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.040352 B = 0.003126 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.725780 B = 8955.170784 C = 9191.078161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 H 0.107 0.893 4 C 0.504 3.496 5 O -0.539 6.539 6 N -0.621 5.621 7 C -0.062 4.062 8 C -0.032 4.032 9 N -0.261 5.261 10 N -0.142 5.142 11 C -0.324 4.324 12 H 0.116 0.884 13 C 0.046 3.954 14 N -0.770 5.770 15 Si 0.935 3.065 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.085 4.085 20 C 0.150 3.850 21 H 0.099 0.901 22 C -0.128 4.128 23 C -0.162 4.162 24 C 0.516 3.484 25 O -0.543 6.543 26 N -0.711 5.711 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.396 0.604 31 H 0.175 0.825 32 H 0.275 0.725 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 11.456 -13.920 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 H 0.125 0.875 4 C 0.289 3.711 5 O -0.417 6.417 6 N -0.263 5.263 7 C -0.167 4.167 8 C -0.208 4.208 9 N -0.092 5.092 10 N 0.090 4.910 11 C -0.456 4.456 12 H 0.134 0.866 13 C -0.171 4.171 14 N -0.396 5.396 15 Si 0.759 3.241 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.236 4.236 20 C 0.044 3.956 21 H 0.117 0.883 22 C -0.165 4.165 23 C -0.202 4.202 24 C 0.302 3.698 25 O -0.421 6.421 26 N -0.366 5.366 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.229 0.771 31 H 0.192 0.808 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -4.174 9.297 -13.371 16.812 hybrid contribution -0.587 0.857 0.741 1.276 sum -4.761 10.154 -12.629 16.890 Atomic orbital electron populations 1.21971 0.92998 1.03225 1.02727 1.21764 0.97958 1.00991 0.93597 0.87484 1.20211 0.81501 0.85408 0.83937 1.90569 1.38497 1.26455 1.86140 1.42510 1.50079 1.29577 1.04090 1.17283 1.12956 1.01826 0.84681 1.24090 1.02846 0.97456 0.96403 1.78258 1.19406 1.12943 0.98594 1.44546 1.26757 1.14577 1.05083 1.19873 1.34153 1.14736 0.76855 0.86635 1.25645 0.95196 0.94919 1.01344 1.70215 1.22776 1.10197 1.36419 0.85826 0.78440 0.79298 0.80578 1.19579 1.20070 1.18812 1.21259 1.10964 1.01945 0.89393 1.21388 0.99072 0.82248 0.92916 0.88308 1.22669 0.96840 1.00150 0.96892 1.22513 0.99829 0.94827 1.03032 1.20881 0.79327 0.90160 0.79480 1.90751 1.48054 1.38545 1.64734 1.46315 1.35670 1.12820 1.41843 0.91834 0.91767 0.91116 0.77105 0.80778 0.91447 0.83795 0.88909 0.89576 0.88338 0.87530 0.74018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 7.78 37.16 0.29 -1.03 16 2 C -0.12 -1.16 2.48 -91.77 -0.23 -1.38 16 3 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.50 7.74 7.01 -10.98 -0.08 7.66 16 5 O -0.54 -10.25 12.11 5.54 0.07 -10.18 16 6 N -0.62 -10.22 5.36 -10.00 -0.05 -10.27 16 7 C -0.06 -1.39 6.90 -83.84 -0.58 -1.96 16 8 C -0.03 -0.84 10.85 -17.04 -0.18 -1.02 16 9 N -0.26 -7.54 10.40 30.80 0.32 -7.22 16 10 N -0.14 -3.87 3.74 -11.41 -0.04 -3.92 16 11 C -0.32 -8.53 10.25 -14.81 -0.15 -8.69 16 12 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 13 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 14 N -0.77 -21.49 11.81 55.50 0.66 -20.83 16 15 Si 0.93 18.85 29.55 -169.99 -5.02 13.83 16 16 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 19 C -0.08 -1.96 11.49 -16.40 -0.19 -2.15 16 20 C 0.15 1.40 2.94 -67.01 -0.20 1.20 16 21 H 0.10 0.97 7.99 -51.93 -0.42 0.56 16 22 C -0.13 -0.76 6.24 -25.10 -0.16 -0.91 16 23 C -0.16 -1.25 6.06 -26.74 -0.16 -1.41 16 24 C 0.52 6.55 7.32 -10.86 -0.08 6.47 16 25 O -0.54 -9.41 18.03 5.56 0.10 -9.31 16 26 N -0.71 -8.67 4.87 -52.77 -0.26 -8.92 16 27 H 0.06 0.73 6.91 -51.93 -0.36 0.37 16 28 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 29 H 0.07 0.43 5.30 -51.93 -0.28 0.16 16 30 H 0.40 4.97 8.24 -40.82 -0.34 4.63 16 31 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.14 2.77 8.06 -52.49 -0.42 2.35 16 34 H 0.09 0.34 7.81 -51.93 -0.41 -0.06 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.68 6.09 -51.93 -0.32 0.37 16 38 H 0.42 5.96 8.19 -40.82 -0.33 5.62 16 LS Contribution 314.64 15.07 4.74 4.74 Total: -1.00 -35.53 314.64 -5.68 -41.22 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.38 Total: 13.00 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.81 Total: -2.13 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.62 Total: -51.16 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.17 Total: -19.49 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.53 -5.68 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329211720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.894 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds