Wall clock time and date at job start Tue Mar 31 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 5 5 O 1.21303 * 119.99475 * 120.00030 * 4 2 1 6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1 7 7 C 1.40597 * 119.99795 * 180.27733 * 6 4 2 8 8 C 1.40643 * 126.08168 * 359.41144 * 7 6 4 9 9 N 1.30911 * 108.38401 * 179.87963 * 8 7 6 10 10 N 1.40064 * 108.40558 * 0.38006 * 9 8 7 11 11 C 1.37328 * 126.06846 * 179.78948 * 10 9 8 12 12 H 1.07997 * 120.00374 * 179.97438 * 11 10 9 13 13 C 1.38992 * 119.99947 * 359.95744 * 11 10 9 14 14 N 1.31297 * 120.00053 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99902 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46620 * 90.00413 * 15 13 11 17 17 H 1.48499 * 109.47103 * 210.00422 * 15 13 11 18 18 H 1.48493 * 109.47079 * 330.00561 * 15 13 11 19 19 C 1.35681 * 126.07974 * 179.72445 * 7 6 4 20 20 C 1.52990 * 109.47358 * 239.99894 * 2 1 3 21 21 H 1.08996 * 110.22001 * 184.52267 * 20 2 1 22 22 C 1.54480 * 110.24719 * 62.49705 * 20 2 1 23 23 C 1.54628 * 101.76836 * 266.41605 * 22 20 2 24 24 C 1.51277 * 104.19657 * 335.20504 * 23 22 20 25 25 O 1.21276 * 124.94252 * 196.23042 * 24 23 22 26 26 N 1.34423 * 110.11564 * 16.24658 * 24 23 22 27 27 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 29 29 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 31 31 H 1.07995 * 125.81010 * 0.03089 * 8 7 6 32 32 H 0.96995 * 119.99724 * 179.97438 * 14 13 11 33 33 H 1.07998 * 126.24366 * 359.91807 * 19 7 6 34 34 H 1.08996 * 110.96787 * 24.53897 * 22 20 2 35 35 H 1.09005 * 110.96900 * 148.30104 * 22 20 2 36 36 H 1.09000 * 110.48560 * 216.52115 * 23 22 20 37 37 H 1.09005 * 110.59145 * 93.93670 * 23 22 20 38 38 H 0.96998 * 124.34953 * 180.38793 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7298 -1.6966 1.1192 6 7 1.7068 -0.2498 2.4546 7 6 2.1803 -0.9092 3.6026 8 6 2.9878 -2.0605 3.6227 9 7 3.2249 -2.3768 4.8707 10 7 2.5737 -1.4489 5.6935 11 6 2.5780 -1.4430 7.0667 12 1 2.0400 -0.6770 7.6052 13 6 3.2747 -2.4232 7.7637 14 7 3.9290 -3.3545 7.1091 15 14 3.2812 -2.4148 9.6317 16 1 2.1393 -3.2201 10.1342 17 1 4.5542 -2.9993 10.1248 18 1 3.1554 -1.0184 10.1207 19 6 1.9345 -0.5513 4.8881 20 6 2.0401 -0.7212 -1.2491 21 1 3.1270 -0.7987 -1.2220 22 6 1.5873 0.0285 -2.5216 23 6 0.2753 -0.7105 -2.8731 24 6 0.4404 -2.0777 -2.2469 25 8 -0.2300 -3.0513 -2.5178 26 7 1.4381 -2.0562 -1.3462 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 1.1493 0.5390 2.5436 31 1 3.3525 -2.5917 2.7561 32 1 4.4155 -4.0383 7.5955 33 1 1.3420 0.2905 5.2144 34 1 1.3974 1.0803 -2.3079 35 1 2.3216 -0.0794 -3.3200 36 1 0.1638 -0.7968 -3.9539 37 1 -0.5826 -0.1945 -2.4420 38 1 1.7232 -2.8242 -0.8269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329211720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:16 Heat of formation + Delta-G solvation = -17.600396 kcal Electronic energy + Delta-G solvation = -23148.063822 eV Core-core repulsion = 19605.178396 eV Total energy + Delta-G solvation = -3542.885425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03960 -41.43072 -40.01901 -37.78718 -35.89764 -35.02650 -33.43959 -32.21867 -32.01152 -29.55012 -28.43940 -26.89524 -24.96807 -22.96515 -22.50181 -21.52626 -21.24281 -20.74037 -19.25334 -18.20599 -18.06956 -17.40740 -17.17855 -16.68106 -16.48635 -15.80356 -15.70490 -15.25586 -15.06816 -14.82646 -14.70500 -14.32856 -14.15296 -13.49758 -13.43656 -13.30615 -13.02341 -12.93259 -12.88170 -12.75754 -12.34279 -12.09992 -12.03616 -11.79349 -11.69379 -11.00344 -10.90684 -10.81627 -10.49418 -10.10077 -10.05451 -8.50489 -8.47458 -6.24485 1.23415 1.38960 1.55251 1.57290 1.62931 1.89113 2.06514 2.33669 2.51312 2.55833 2.92389 3.08693 3.47800 3.61815 3.71825 4.01683 4.13562 4.20256 4.40259 4.43669 4.53499 4.64514 4.71743 4.87872 4.92353 5.00039 5.01660 5.10505 5.18677 5.22572 5.30266 5.36444 5.51975 5.88015 5.96177 6.18767 6.33401 6.74662 6.81542 7.26771 7.44071 7.49757 7.69956 8.51970 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.040352 B = 0.003126 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.725780 B = 8955.170784 C = 9191.078161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 H 0.154 0.846 4 C 0.497 3.503 5 O -0.579 6.579 6 N -0.616 5.616 7 C -0.043 4.043 8 C -0.061 4.061 9 N -0.313 5.313 10 N -0.170 5.170 11 C -0.355 4.355 12 H 0.141 0.859 13 C -0.008 4.008 14 N -0.826 5.826 15 Si 1.019 2.981 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.243 1.243 19 C -0.083 4.083 20 C 0.141 3.859 21 H 0.091 0.909 22 C -0.110 4.110 23 C -0.152 4.152 24 C 0.503 3.497 25 O -0.604 6.604 26 N -0.720 5.720 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.419 0.581 31 H 0.167 0.833 32 H 0.275 0.725 33 H 0.187 0.813 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 15.567 -14.558 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 H 0.172 0.828 4 C 0.286 3.714 5 O -0.459 6.459 6 N -0.261 5.261 7 C -0.149 4.149 8 C -0.236 4.236 9 N -0.145 5.145 10 N 0.061 4.939 11 C -0.486 4.486 12 H 0.158 0.842 13 C -0.219 4.219 14 N -0.454 5.454 15 Si 0.838 3.162 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.166 1.166 19 C -0.233 4.233 20 C 0.035 3.965 21 H 0.109 0.891 22 C -0.147 4.147 23 C -0.191 4.191 24 C 0.292 3.708 25 O -0.486 6.486 26 N -0.371 5.371 27 H 0.047 0.953 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.256 0.744 31 H 0.184 0.816 32 H 0.085 0.915 33 H 0.204 0.796 34 H 0.152 0.848 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.544 13.502 -14.047 20.257 hybrid contribution -0.177 -0.403 0.779 0.895 sum -5.721 13.098 -13.268 19.502 Atomic orbital electron populations 1.22016 0.91777 1.01743 1.05238 1.21855 0.98619 1.02303 0.89857 0.82810 1.21496 0.80056 0.84839 0.85057 1.90568 1.40087 1.28412 1.86785 1.42528 1.50617 1.30197 1.02765 1.17373 1.10640 1.00268 0.86642 1.24160 1.04535 0.99321 0.95590 1.78143 1.21352 1.15042 0.99975 1.44827 1.27973 1.15402 1.05723 1.20610 1.35021 1.15913 0.77084 0.84190 1.26884 0.94048 0.93916 1.07038 1.70404 1.24628 1.11579 1.38838 0.84594 0.78193 0.80249 0.73174 1.19030 1.20255 1.16573 1.22026 1.10035 1.02034 0.89218 1.21695 0.98680 0.81267 0.94861 0.89096 1.22752 0.95708 1.01384 0.94876 1.22571 1.01639 0.91349 1.03565 1.21875 0.78313 0.91578 0.79079 1.90706 1.50141 1.41157 1.66577 1.46603 1.35675 1.13603 1.41210 0.95302 0.90524 0.87423 0.74409 0.81617 0.91497 0.79599 0.84836 0.88231 0.86873 0.85454 0.76152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 7.78 71.98 0.56 -1.46 16 2 C -0.10 -1.62 2.48 -11.54 -0.03 -1.65 16 3 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 4 C 0.50 14.62 7.01 87.66 0.61 15.24 16 5 O -0.58 -22.58 12.11 -3.10 -0.04 -22.62 16 6 N -0.62 -19.12 5.36 -303.92 -1.63 -20.75 16 7 C -0.04 -1.91 6.90 37.73 0.26 -1.65 16 8 C -0.06 -3.29 10.85 85.42 0.93 -2.36 16 9 N -0.31 -18.97 10.40 -56.47 -0.59 -19.56 16 10 N -0.17 -9.45 3.74 -190.02 -0.71 -10.16 16 11 C -0.36 -18.87 10.25 84.01 0.86 -18.01 16 12 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 13 C -0.01 -0.39 5.50 84.95 0.47 0.07 16 14 N -0.83 -48.25 11.81 21.66 0.26 -47.99 16 15 Si 1.02 38.80 29.55 68.60 2.03 40.82 16 16 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 17 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 18 H -0.24 -8.31 7.11 99.48 0.71 -7.60 16 19 C -0.08 -3.77 11.49 83.38 0.96 -2.81 16 20 C 0.14 2.26 2.94 45.44 0.13 2.39 16 21 H 0.09 1.63 7.99 -2.39 -0.02 1.62 16 22 C -0.11 -0.75 6.24 31.65 0.20 -0.55 16 23 C -0.15 -1.78 6.06 30.59 0.19 -1.59 16 24 C 0.50 12.57 7.32 87.90 0.64 13.21 16 25 O -0.60 -21.73 18.03 -3.02 -0.05 -21.79 16 26 N -0.72 -17.57 4.87 -439.45 -2.14 -19.71 16 27 H 0.03 0.60 6.91 -2.39 -0.02 0.59 16 28 H 0.08 0.86 7.56 -2.39 -0.02 0.85 16 29 H 0.11 0.68 5.30 -2.39 -0.01 0.67 16 30 H 0.42 9.00 8.24 -92.71 -0.76 8.24 16 31 H 0.17 9.05 5.92 -2.91 -0.02 9.03 16 32 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.19 6.59 8.06 -2.91 -0.02 6.57 16 34 H 0.13 -0.05 7.81 -2.39 -0.02 -0.07 16 35 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.13 0.99 6.09 -2.38 -0.01 0.98 16 38 H 0.40 12.25 8.19 -92.71 -0.76 11.50 16 Total: -1.00 -86.85 314.64 2.51 -84.34 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.39 Total: 36.57 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.78 Total: 0.83 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -4.81 Total: -118.16 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.09 Total: -44.40 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.82 kcal Total: -86.85 2.51 -84.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329211720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.741 kcal (2) G-P(sol) polarization free energy of solvation -86.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds