Wall clock time and date at job start Tue Mar 31 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47312 * 2 1 4 4 C 1.50706 * 109.47060 * 240.00063 * 2 1 3 5 5 O 1.21302 * 119.99920 * 240.00429 * 4 2 1 6 6 N 1.34772 * 120.00063 * 60.00042 * 4 2 1 7 7 C 1.40594 * 119.99901 * 179.97438 * 6 4 2 8 8 C 1.40647 * 126.08323 * 359.69411 * 7 6 4 9 9 N 1.30906 * 108.38563 * 179.81402 * 8 7 6 10 10 N 1.40063 * 108.40841 * 0.44173 * 9 8 7 11 11 C 1.37328 * 126.07222 * 179.69250 * 10 9 8 12 12 H 1.08004 * 120.00362 * 180.02562 * 11 10 9 13 13 C 1.38982 * 119.99893 * 0.03004 * 11 10 9 14 14 N 1.31300 * 119.99980 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00372 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46827 * 59.99712 * 15 13 11 17 17 H 1.48496 * 109.47348 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46982 * 299.99917 * 15 13 11 19 19 C 1.35684 * 126.08110 * 180.02562 * 7 6 4 20 20 C 1.52997 * 109.47067 * 120.00330 * 2 1 3 21 21 H 1.09004 * 110.28875 * 178.02252 * 20 2 1 22 22 C 1.54487 * 110.24441 * 299.99958 * 20 2 1 23 23 C 1.54619 * 101.76557 * 93.58403 * 22 20 2 24 24 C 1.51281 * 104.19775 * 24.79876 * 23 22 20 25 25 O 1.21283 * 124.94320 * 163.71594 * 24 23 22 26 26 N 1.34413 * 110.11648 * 343.74848 * 24 23 22 27 27 H 1.08999 * 109.47312 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46981 * 300.00029 * 1 2 3 29 29 H 1.09000 * 109.46890 * 59.99789 * 1 2 3 30 30 H 0.97005 * 119.99897 * 0.02562 * 6 4 2 31 31 H 1.07996 * 125.80489 * 359.96341 * 8 7 6 32 32 H 0.97001 * 120.00226 * 179.97438 * 14 13 11 33 33 H 1.07999 * 126.24786 * 359.97438 * 19 7 6 34 34 H 1.08996 * 110.96729 * 211.70358 * 22 20 2 35 35 H 1.08996 * 110.96659 * 335.42545 * 22 20 2 36 36 H 1.09007 * 110.48907 * 143.47513 * 23 22 20 37 37 H 1.09005 * 110.49113 * 266.11989 * 23 22 20 38 38 H 0.96997 * 124.35521 * 179.59670 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7297 -1.6967 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 2.1759 -0.9124 -3.6025 8 6 2.9932 -2.0569 -3.6226 9 7 3.2166 -2.3828 -4.8706 10 7 2.5620 -1.4575 -5.6934 11 6 2.5613 -1.4552 -7.0667 12 1 2.0209 -0.6907 -7.6052 13 6 3.2559 -2.4368 -7.7636 14 7 3.9133 -3.3659 -7.1089 15 14 3.2545 -2.4342 -9.6316 16 1 3.8395 -1.1617 -10.1252 17 1 4.0632 -3.5760 -10.1288 18 1 1.8599 -2.5625 -10.1256 19 6 1.9258 -0.5578 -4.8881 20 6 2.0400 -0.7213 1.2492 21 1 3.1293 -0.7597 1.2452 22 6 1.5349 -0.0071 2.5225 23 6 0.2433 -0.7972 2.8359 24 6 0.4699 -2.1482 2.1940 25 8 -0.1701 -3.1492 2.4378 26 7 1.4842 -2.0781 1.3148 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.1494 0.5390 -2.5436 31 1 3.3702 -2.5793 -2.7559 32 1 4.3978 -4.0512 -7.5953 33 1 1.3312 0.2826 -5.2145 34 1 2.2562 -0.1007 3.3343 35 1 1.3125 1.0405 2.3199 36 1 0.1130 -0.9036 3.9129 37 1 -0.6223 -0.3047 2.3928 38 1 1.8073 -2.8277 0.7909 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329211722.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:18 Heat of formation + Delta-G solvation = 10.861809 kcal Electronic energy + Delta-G solvation = -23165.800560 eV Core-core repulsion = 19624.149348 eV Total energy + Delta-G solvation = -3541.651212 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01933 -39.78606 -38.60512 -36.71882 -34.29250 -33.34448 -32.38198 -31.34279 -30.22335 -27.89018 -27.58062 -25.10243 -23.96302 -21.74451 -20.89478 -20.60371 -19.75635 -19.37980 -17.52407 -17.27104 -16.96457 -16.13541 -15.52875 -15.39885 -15.19929 -14.63196 -14.23435 -13.91050 -13.82875 -13.45623 -13.25137 -13.13664 -12.89930 -12.82490 -12.41800 -12.14232 -11.71678 -11.61238 -11.40693 -11.32419 -11.24315 -11.07406 -10.95930 -10.57436 -10.18943 -9.88470 -9.23749 -9.18288 -9.04272 -8.82219 -8.08357 -6.73022 -6.57349 -4.24994 2.58221 2.78475 3.01839 3.03322 3.07676 3.42236 3.48840 3.65363 3.84492 4.22551 4.27462 4.39005 4.42288 4.68085 4.76510 4.86757 4.98740 5.00729 5.03017 5.31076 5.35520 5.45095 5.51837 5.60870 5.67764 5.80824 5.99377 6.21224 6.42950 6.84591 6.87502 6.92721 7.08318 7.14079 7.22139 7.83481 8.13652 8.25738 8.29418 8.60342 8.81267 9.35560 9.64903 10.38541 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.039718 B = 0.003149 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.792586 B = 8890.492009 C = 9140.068139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 H 0.107 0.893 4 C 0.504 3.496 5 O -0.539 6.539 6 N -0.621 5.621 7 C -0.062 4.062 8 C -0.032 4.032 9 N -0.261 5.261 10 N -0.142 5.142 11 C -0.324 4.324 12 H 0.116 0.884 13 C 0.046 3.954 14 N -0.770 5.770 15 Si 0.935 3.065 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.267 1.267 19 C -0.085 4.085 20 C 0.151 3.849 21 H 0.098 0.902 22 C -0.128 4.128 23 C -0.162 4.162 24 C 0.515 3.485 25 O -0.543 6.543 26 N -0.711 5.711 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.396 0.604 31 H 0.175 0.825 32 H 0.275 0.725 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 11.512 13.969 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 H 0.125 0.875 4 C 0.290 3.710 5 O -0.417 6.417 6 N -0.262 5.262 7 C -0.168 4.168 8 C -0.208 4.208 9 N -0.092 5.092 10 N 0.091 4.909 11 C -0.457 4.457 12 H 0.133 0.867 13 C -0.171 4.171 14 N -0.396 5.396 15 Si 0.759 3.241 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.192 1.192 19 C -0.236 4.236 20 C 0.044 3.956 21 H 0.116 0.884 22 C -0.166 4.166 23 C -0.202 4.202 24 C 0.301 3.699 25 O -0.421 6.421 26 N -0.366 5.366 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.229 0.771 31 H 0.192 0.808 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -4.239 9.323 13.405 16.870 hybrid contribution -0.572 0.881 -0.743 1.287 sum -4.811 10.205 12.662 16.959 Atomic orbital electron populations 1.21979 0.93015 1.03192 1.02738 1.21763 0.97945 1.00997 0.93605 0.87489 1.20202 0.81503 0.85385 0.83923 1.90560 1.38515 1.26472 1.86131 1.42508 1.50184 1.29461 1.04092 1.17283 1.12722 1.02076 0.84677 1.24089 1.02693 0.97605 0.96402 1.78256 1.19422 1.12932 0.98591 1.44539 1.26854 1.14471 1.05070 1.19827 1.34167 1.14795 0.76870 0.86678 1.25639 0.95190 0.94915 1.01340 1.70206 1.22689 1.10207 1.36523 0.85894 0.79072 0.78647 0.80533 1.19162 1.20116 1.19152 1.21260 1.10974 1.01948 0.89394 1.21382 0.99413 0.81886 0.92922 0.88396 1.22668 0.96854 1.00077 0.96969 1.22522 0.99901 0.94795 1.03006 1.20882 0.79386 0.90163 0.79469 1.90752 1.50324 1.36030 1.64998 1.46328 1.35129 1.12307 1.42839 0.91864 0.91077 0.91760 0.77104 0.80777 0.91389 0.83798 0.89595 0.88910 0.88342 0.87527 0.73916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 7.71 37.16 0.29 -1.02 16 2 C -0.12 -1.16 2.50 -91.77 -0.23 -1.39 16 3 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.50 7.75 6.99 -10.98 -0.08 7.67 16 5 O -0.54 -10.25 11.96 5.54 0.07 -10.19 16 6 N -0.62 -10.22 5.36 -10.00 -0.05 -10.28 16 7 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 8 C -0.03 -0.84 10.85 -17.04 -0.18 -1.02 16 9 N -0.26 -7.55 10.40 30.80 0.32 -7.23 16 10 N -0.14 -3.87 3.74 -11.41 -0.04 -3.91 16 11 C -0.32 -8.55 10.25 -14.81 -0.15 -8.70 16 12 H 0.12 2.70 7.83 -52.48 -0.41 2.28 16 13 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 14 N -0.77 -21.51 11.81 55.49 0.66 -20.85 16 15 Si 0.93 18.86 29.55 -169.99 -5.02 13.83 16 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 C -0.08 -1.97 11.49 -16.39 -0.19 -2.15 16 20 C 0.15 1.40 2.96 -67.01 -0.20 1.21 16 21 H 0.10 0.95 8.07 -51.93 -0.42 0.53 16 22 C -0.13 -0.76 6.21 -25.10 -0.16 -0.92 16 23 C -0.16 -1.26 6.06 -26.75 -0.16 -1.42 16 24 C 0.52 6.62 7.32 -10.86 -0.08 6.54 16 25 O -0.54 -9.51 18.03 5.56 0.10 -9.41 16 26 N -0.71 -8.76 4.89 -52.76 -0.26 -9.02 16 27 H 0.06 0.72 6.90 -51.93 -0.36 0.36 16 28 H 0.07 0.43 5.28 -51.93 -0.27 0.15 16 29 H 0.06 0.51 7.56 -51.93 -0.39 0.11 16 30 H 0.40 4.97 8.24 -40.82 -0.34 4.64 16 31 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 32 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.14 2.77 8.06 -52.49 -0.42 2.35 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.34 7.69 -51.93 -0.40 -0.06 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.69 6.07 -51.93 -0.32 0.38 16 38 H 0.42 6.07 8.01 -40.82 -0.33 5.74 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -35.57 314.18 -5.69 -41.26 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.37 Total: 13.14 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.82 Total: -2.08 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.62 Total: -51.29 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.17 Total: -19.60 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.57 -5.69 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329211722.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.119 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds