Wall clock time and date at job start Tue Mar 31 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21579 * 119.99978 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99908 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99635 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.47011 * 180.02562 * 8 7 5 10 10 O 1.21294 * 119.99820 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99914 * 180.02562 * 9 8 7 12 12 C 1.37104 * 119.99647 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00062 * 359.97438 * 12 11 9 14 14 C 1.38953 * 119.99676 * 179.97438 * 12 11 9 15 15 N 1.31415 * 119.99437 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00224 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47423 * 89.99689 * 16 14 12 18 18 H 1.48503 * 109.47169 * 210.00064 * 16 14 12 19 19 H 1.48507 * 109.47219 * 329.99694 * 16 14 12 20 20 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 21 21 C 1.38235 * 119.62067 * 84.99719 * 20 2 1 22 22 C 1.38620 * 119.16161 * 179.97438 * 21 20 2 23 23 C 1.38670 * 118.42113 * 359.97438 * 22 21 20 24 24 C 1.38180 * 119.16439 * 359.97438 * 23 22 21 25 25 N 1.31854 * 119.61874 * 264.73183 * 20 2 1 26 26 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 28 28 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 29 29 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 30 30 H 0.96995 * 120.00015 * 359.72369 * 7 5 4 31 31 H 1.09005 * 109.47306 * 299.99972 * 8 7 5 32 32 H 1.09002 * 109.47518 * 60.00210 * 8 7 5 33 33 H 0.97000 * 120.00556 * 359.97438 * 11 9 8 34 34 H 0.97005 * 119.99358 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.41592 * 0.02562 * 21 20 2 36 36 H 1.08004 * 120.79004 * 180.02562 * 22 21 20 37 37 H 1.08007 * 120.41702 * 180.02562 * 23 22 21 38 38 H 1.08000 * 119.61633 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8582 1.1616 2.4116 7 7 2.5958 -0.6536 3.4578 8 6 2.7362 0.0775 4.7195 9 6 3.2526 -0.8546 5.7853 10 8 3.4814 -2.0151 5.5171 11 7 3.4603 -0.3985 7.0364 12 6 3.9296 -1.2465 8.0060 13 1 4.1325 -2.2801 7.7674 14 6 4.1442 -0.7761 9.2958 15 7 4.5936 -1.5892 10.2253 16 14 3.7926 1.0113 9.7087 17 1 2.3844 1.1474 10.1600 18 1 4.7049 1.4579 10.7920 19 1 4.0090 1.8499 8.5023 20 6 2.0324 -0.7104 -1.2304 21 6 2.1613 -0.0132 -2.4171 22 6 2.6249 -0.6760 -3.5429 23 6 2.9433 -2.0211 -3.4326 24 6 2.7897 -2.6516 -2.2126 25 7 2.3488 -1.9885 -1.1613 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.2490 -1.6316 1.1527 30 1 2.8224 -1.5957 3.4153 31 1 3.4379 0.9009 4.5863 32 1 1.7658 0.4722 5.0207 33 1 3.2777 0.5298 7.2508 34 1 4.7431 -1.2609 11.1258 35 1 1.9050 1.0347 -2.4662 36 1 2.7361 -0.1568 -4.4834 37 1 3.3077 -2.5688 -4.2892 38 1 3.0351 -3.6991 -2.1186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329214398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:38 Heat of formation + Delta-G solvation = -24.692177 kcal Electronic energy + Delta-G solvation = -22083.707558 eV Core-core repulsion = 18540.514610 eV Total energy + Delta-G solvation = -3543.192948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78521 -39.71557 -38.36308 -35.80564 -34.40317 -33.67387 -32.77109 -31.96989 -31.71934 -29.72514 -27.50631 -24.82397 -24.17118 -23.83978 -21.68426 -20.42185 -19.59318 -18.83536 -18.28562 -17.17748 -16.79760 -16.01841 -15.69001 -15.51150 -15.27488 -14.92656 -14.70124 -14.35500 -14.15114 -13.95831 -13.63753 -13.42396 -13.08501 -12.94761 -12.49577 -12.44089 -12.15314 -12.10557 -11.96766 -11.39019 -11.20644 -10.61401 -10.26041 -10.06571 -10.02411 -9.84721 -9.66361 -9.43281 -9.10993 -8.72310 -8.62011 -8.26944 -6.37717 -3.90076 0.71405 0.90910 2.79291 3.02449 3.07027 3.14901 3.35761 3.45456 3.62156 3.81964 4.06434 4.28232 4.44344 4.49969 4.67047 4.71420 4.80597 5.01654 5.09677 5.17513 5.18797 5.33519 5.48185 5.65730 5.70474 5.77184 5.80231 5.85666 5.90665 6.03427 6.31077 6.54507 6.71306 7.17234 7.48687 7.62210 8.04021 8.27284 8.48191 8.80145 8.85245 9.33398 9.67665 10.74557 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.034635 B = 0.002648 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.243900 B =10571.233357 C =11080.282901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.104 0.896 4 N -0.736 5.736 5 C 0.707 3.293 6 O -0.602 6.602 7 N -0.724 5.724 8 C 0.127 3.873 9 C 0.439 3.561 10 O -0.578 6.578 11 N -0.578 5.578 12 C -0.309 4.309 13 H 0.121 0.879 14 C 0.044 3.956 15 N -0.876 5.876 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.267 1.267 20 C 0.126 3.874 21 C -0.163 4.163 22 C -0.072 4.072 23 C -0.178 4.178 24 C 0.106 3.894 25 N -0.479 5.479 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.408 0.592 30 H 0.408 0.592 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.374 0.626 34 H 0.275 0.725 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.957 3.901 -26.498 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.122 0.878 4 N -0.393 5.393 5 C 0.407 3.593 6 O -0.482 6.482 7 N -0.382 5.382 8 C -0.002 4.002 9 C 0.225 3.775 10 O -0.462 6.462 11 N -0.216 5.216 12 C -0.438 4.438 13 H 0.139 0.861 14 C -0.160 4.160 15 N -0.515 5.515 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.192 1.192 20 C -0.013 4.013 21 C -0.183 4.183 22 C -0.098 4.098 23 C -0.198 4.198 24 C -0.051 4.051 25 N -0.189 5.189 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.244 0.756 30 H 0.246 0.754 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.208 0.792 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.064 3.717 -25.547 26.518 hybrid contribution 0.167 0.877 -0.397 0.977 sum -5.897 4.594 -25.944 26.999 Atomic orbital electron populations 1.22186 0.93847 1.02719 1.02975 1.19537 0.94191 0.95760 0.79693 0.87808 1.44963 1.71844 1.14562 1.07948 1.15819 0.78345 0.84898 0.80285 1.90882 1.58013 1.14362 1.84902 1.44735 1.70404 1.14903 1.08145 1.20795 1.02106 0.94282 0.83017 1.19685 0.85250 0.88970 0.83579 1.90540 1.56688 1.18271 1.80734 1.42116 1.58861 1.11609 1.08966 1.19443 1.40524 0.95830 0.87956 0.86107 1.25067 0.97022 0.98437 0.95453 1.69625 1.43591 1.35289 1.02966 0.86665 0.79337 0.84286 0.79172 1.19409 1.20037 1.19187 1.21374 0.94783 0.90404 0.94725 1.21871 1.01548 1.01666 0.93256 1.21582 0.95025 0.94498 0.98652 1.22170 1.02206 0.95787 0.99602 1.22785 0.94147 1.00141 0.88041 1.67291 1.10954 1.08397 1.32220 0.92106 0.90802 0.91660 0.75599 0.75394 0.89923 0.89884 0.79238 0.91435 0.84419 0.84649 0.84711 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.47 37.16 0.35 -1.22 16 2 C 0.22 2.38 2.82 -69.09 -0.20 2.19 16 3 H 0.10 1.20 7.55 -51.93 -0.39 0.81 16 4 N -0.74 -9.66 5.05 -59.82 -0.30 -9.96 16 5 C 0.71 11.51 8.53 -86.91 -0.74 10.77 16 6 O -0.60 -11.30 16.00 5.30 0.08 -11.21 16 7 N -0.72 -12.25 5.53 -66.41 -0.37 -12.61 16 8 C 0.13 2.28 6.15 -5.19 -0.03 2.24 16 9 C 0.44 9.86 7.85 -10.98 -0.09 9.78 16 10 O -0.58 -14.89 15.24 5.55 0.08 -14.81 16 11 N -0.58 -13.64 5.09 -10.96 -0.06 -13.70 16 12 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 13 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 14 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 15 N -0.88 -25.23 13.96 55.50 0.77 -24.46 16 16 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 20 C 0.13 1.25 5.89 -82.59 -0.49 0.76 16 21 C -0.16 -1.26 9.77 -39.44 -0.39 -1.64 16 22 C -0.07 -0.45 10.18 -39.28 -0.40 -0.85 16 23 C -0.18 -1.14 10.11 -39.44 -0.40 -1.54 16 24 C 0.11 0.85 11.18 -17.55 -0.20 0.66 16 25 N -0.48 -4.99 9.03 -9.48 -0.09 -5.08 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.41 5.08 7.64 -40.82 -0.31 4.77 16 30 H 0.41 6.89 7.45 -40.82 -0.30 6.58 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 34 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 37 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -34.00 333.03 -6.98 -40.98 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -4.60 Total: 17.85 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -2.82 Total: 13.48 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -0.04 Total: -65.81 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: 0.17 Total: -26.02 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.00 -6.98 -40.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329214398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.292 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds