Wall clock time and date at job start Tue Mar 31 2020 06:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99594 * 2 1 4 4 H 1.48497 * 109.46862 * 270.00112 * 3 2 1 5 5 H 1.48497 * 109.47032 * 30.00364 * 3 2 1 6 6 H 1.48500 * 109.46907 * 149.99921 * 3 2 1 7 7 C 1.37876 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99683 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00092 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47053 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46992 * 180.02562 * 10 9 7 12 12 C 1.34781 * 120.00178 * 179.97438 * 11 10 9 13 13 O 1.21586 * 119.99887 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99962 * 179.97438 * 12 11 10 15 15 C 1.47580 * 134.49075 * 180.02562 * 14 12 11 16 16 C 1.53948 * 86.11985 * 155.36241 * 15 14 12 17 17 C 1.50697 * 113.74390 * 137.95224 * 16 15 14 18 18 C 1.38241 * 119.97433 * 119.99656 * 17 16 15 19 19 C 1.38205 * 120.02377 * 179.74187 * 18 17 16 20 20 C 1.38455 * 119.97496 * 0.26259 * 19 18 17 21 21 F 1.35097 * 120.02414 * 180.02562 * 20 19 18 22 22 C 1.38464 * 119.95049 * 359.97438 * 20 19 18 23 23 C 1.38201 * 119.97214 * 0.02562 * 22 20 19 24 24 C 1.47583 * 134.49790 * 0.02562 * 14 12 11 25 25 H 0.96998 * 120.00390 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46968 * 60.00335 * 9 7 2 27 27 H 1.08999 * 109.47197 * 300.00224 * 9 7 2 28 28 H 1.09000 * 109.47041 * 60.00280 * 10 9 7 29 29 H 1.08999 * 109.47221 * 300.00110 * 10 9 7 30 30 H 0.97007 * 120.00373 * 0.02562 * 11 10 9 31 31 H 1.08997 * 113.77386 * 41.05900 * 15 14 12 32 32 H 1.09009 * 113.87198 * 269.67662 * 15 14 12 33 33 H 1.08998 * 113.73612 * 269.15045 * 16 15 14 34 34 H 1.08002 * 119.99029 * 0.02809 * 18 17 16 35 35 H 1.08004 * 120.00758 * 180.27782 * 19 18 17 36 36 H 1.07993 * 120.01407 * 180.02562 * 22 20 19 37 37 H 1.07996 * 119.98812 * 180.02562 * 23 22 20 38 38 H 1.08995 * 113.76959 * 90.33448 * 24 14 12 39 39 H 1.09002 * 113.76458 * 318.94202 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 7 5.4866 -2.6363 -0.0022 12 6 6.1606 -3.8035 -0.0026 13 8 5.5528 -4.8565 -0.0035 14 7 7.5084 -3.8033 -0.0031 15 6 8.5427 -4.8560 -0.0041 16 6 9.4653 -3.8029 -0.6441 17 6 10.8652 -3.8031 -0.0861 18 6 11.9410 -4.0447 -0.9199 19 6 13.2256 -4.0400 -0.4103 20 6 13.4345 -3.7985 0.9369 21 9 14.6898 -3.7930 1.4360 22 6 12.3558 -3.5614 1.7721 23 6 11.0721 -3.5667 1.2602 24 6 8.5426 -2.7506 -0.0029 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8746 -0.6799 -0.8911 28 1 3.6580 -3.1496 -0.8925 29 1 3.6587 -3.1508 0.8875 30 1 5.9717 -1.7962 -0.0012 31 1 8.3139 -5.6962 -0.6597 32 1 8.8562 -5.1674 0.9924 33 1 9.4422 -3.8036 -1.7339 34 1 11.7779 -4.2327 -1.9709 35 1 14.0663 -4.2243 -1.0629 36 1 12.5175 -3.3726 2.8230 37 1 10.2306 -3.3815 1.9113 38 1 8.8550 -2.4419 0.9947 39 1 8.3137 -1.9097 -0.6575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330848115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:04 Heat of formation + Delta-G solvation = -17.949736 kcal Electronic energy + Delta-G solvation = -21794.294978 eV Core-core repulsion = 18231.474442 eV Total energy + Delta-G solvation = -3562.820536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.27739 -40.87701 -39.25264 -37.69139 -34.89805 -32.82202 -31.99554 -31.61062 -30.20846 -28.11727 -26.48853 -24.79515 -23.76592 -23.14730 -20.93795 -20.75055 -19.45022 -18.26785 -17.77959 -17.01695 -16.90607 -16.40017 -15.99479 -15.80724 -15.26814 -14.79102 -14.31704 -14.22266 -13.99716 -13.80774 -13.69700 -13.61892 -13.12420 -12.99577 -12.68905 -12.59279 -12.29837 -11.74261 -11.49427 -11.41318 -11.28959 -11.20277 -10.39582 -10.26494 -9.97800 -9.75089 -9.56542 -9.32812 -8.96875 -8.86949 -8.62509 -8.34212 -6.11088 -4.11157 0.64503 0.77460 2.55083 3.05790 3.24630 3.32129 3.33475 3.44763 3.83654 4.07134 4.15711 4.26324 4.32935 4.37321 4.44704 4.68050 4.74251 4.79382 5.06147 5.13425 5.18429 5.21673 5.37482 5.45441 5.53550 5.57947 5.67189 5.72986 5.81843 6.07710 6.12357 6.23968 6.42518 6.57461 6.80906 7.12321 7.24077 7.38223 7.67150 8.24330 8.45068 8.87951 8.93962 9.48889 11.01935 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.027968 B = 0.002523 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.921348 B =11096.612622 C =11721.767735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.148 3.852 11 N -0.739 5.739 12 C 0.724 3.276 13 O -0.590 6.590 14 N -0.669 5.669 15 C 0.139 3.861 16 C -0.084 4.084 17 C -0.083 4.083 18 C -0.081 4.081 19 C -0.152 4.152 20 C 0.094 3.906 21 F -0.141 7.141 22 C -0.150 4.150 23 C -0.086 4.086 24 C 0.107 3.893 25 H 0.265 0.735 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.391 0.609 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.635 -5.664 -0.095 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.392 5.392 12 C 0.427 3.573 13 O -0.468 6.468 14 N -0.410 5.410 15 C 0.016 3.984 16 C -0.103 4.103 17 C -0.084 4.084 18 C -0.099 4.099 19 C -0.171 4.171 20 C 0.075 3.925 21 F -0.120 7.120 22 C -0.168 4.168 23 C -0.103 4.103 24 C -0.016 4.016 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.223 0.777 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 28.751 -6.327 -0.073 29.439 hybrid contribution 0.847 1.412 0.169 1.655 sum 29.598 -4.916 0.096 30.004 Atomic orbital electron populations 1.69904 1.06273 1.27039 1.50444 1.25004 0.94773 0.99139 0.94406 0.86743 0.80240 0.83549 0.78474 1.20237 1.21280 1.19126 1.20913 0.88601 0.94929 1.51591 0.90564 1.19791 0.97951 0.91370 0.96762 1.21402 0.74586 0.99914 1.01543 1.45486 1.08766 1.06147 1.78784 1.15523 0.79244 0.84839 0.77700 1.90915 1.66379 1.30901 1.58641 1.49045 1.02372 1.09806 1.79773 1.23013 0.82513 0.92376 1.00513 1.22158 0.89432 0.97382 1.01301 1.19699 0.94584 1.00492 0.93618 1.20944 0.90927 0.97805 1.00202 1.21164 0.98717 1.03465 0.93757 1.17776 0.79346 1.02749 0.92636 1.91506 1.38446 1.94048 1.88008 1.21163 0.91900 1.03237 1.00549 1.20962 0.96457 0.97996 0.94929 1.23279 0.84725 0.92888 1.00727 0.92552 0.96055 0.96493 0.92113 0.92109 0.77658 0.89761 0.90010 0.86824 0.84730 0.84681 0.84613 0.84689 0.89669 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 7 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.48 4.16 -27.89 -0.12 -0.60 16 10 C 0.15 3.10 5.61 -4.04 -0.02 3.08 16 11 N -0.74 -12.74 5.56 -65.23 -0.36 -13.10 16 12 C 0.72 12.69 8.76 -86.92 -0.76 11.93 16 13 O -0.59 -12.93 17.07 5.29 0.09 -12.84 16 14 N -0.67 -8.29 3.61 -184.16 -0.66 -8.95 16 15 C 0.14 1.29 8.30 -2.97 -0.02 1.27 16 16 C -0.08 -0.56 4.17 -90.85 -0.38 -0.94 16 17 C -0.08 -0.52 5.30 -104.62 -0.55 -1.07 16 18 C -0.08 -0.46 9.71 -39.59 -0.38 -0.85 16 19 C -0.15 -0.97 10.03 -39.51 -0.40 -1.37 16 20 C 0.09 0.72 7.30 -39.42 -0.29 0.43 16 21 F -0.14 -1.25 17.27 2.25 0.04 -1.21 16 22 C -0.15 -1.01 10.03 -39.51 -0.40 -1.41 16 23 C -0.09 -0.54 8.61 -39.59 -0.34 -0.88 16 24 C 0.11 0.86 7.81 -2.98 -0.02 0.84 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 27 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.39 5.66 8.08 -40.82 -0.33 5.33 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.68 7.74 -51.92 -0.40 0.28 16 33 H 0.11 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.14 0.72 6.65 -52.49 -0.35 0.37 16 38 H 0.09 0.57 6.31 -51.93 -0.33 0.25 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -34.34 335.29 -9.00 -43.34 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.14 Total: 0.66 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -4.12 Total: -2.70 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.25 Total: -48.63 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.34 -9.00 -43.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330848115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.394 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds