Wall clock time and date at job start Tue Mar 31 2020 06:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.46940 * 2 1 4 4 C 1.42905 * 113.99984 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47180 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47227 * 180.02562 * 5 4 3 7 7 C 1.34282 * 125.75323 * 125.24794 * 6 5 4 8 8 C 1.38106 * 107.40267 * 180.13307 * 7 6 5 9 9 C 1.47356 * 126.42343 * 179.89350 * 8 7 6 10 10 O 1.21634 * 120.00133 * 7.69012 * 9 8 7 11 11 N 1.34777 * 120.00330 * 187.69097 * 9 8 7 12 12 C 1.36979 * 119.99929 * 188.70909 * 11 9 8 13 13 H 1.08001 * 120.00444 * 10.42048 * 12 11 9 14 14 C 1.38977 * 119.99755 * 190.69484 * 12 11 9 15 15 N 1.31412 * 120.00265 * 230.20118 * 14 12 11 16 16 Si 1.86808 * 119.99826 * 50.20198 * 14 12 11 17 17 H 1.48501 * 109.47027 * 95.34748 * 16 14 12 18 18 H 1.48499 * 109.47046 * 215.34547 * 16 14 12 19 19 H 1.48503 * 109.46984 * 335.35070 * 16 14 12 20 20 C 1.46498 * 119.99863 * 8.70242 * 11 9 8 21 21 C 1.47201 * 109.47036 * 270.89969 * 20 11 9 22 22 N 9.52397 * 152.18756 * 34.40230 * 2 1 3 23 23 C 1.41316 * 107.15715 * 359.63573 * 8 7 6 24 24 N 1.30446 * 108.02779 * 0.22047 * 23 8 7 25 25 H 1.08996 * 109.47260 * 300.00288 * 1 2 3 26 26 H 1.09002 * 109.47052 * 60.00030 * 1 2 3 27 27 H 1.09006 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47403 * 240.00139 * 2 1 3 29 29 H 1.08995 * 109.47432 * 119.99977 * 2 1 3 30 30 H 1.09001 * 109.47328 * 59.99593 * 4 3 2 31 31 H 1.09007 * 109.46622 * 300.00142 * 4 3 2 32 32 H 1.09001 * 109.47402 * 59.99540 * 5 4 3 33 33 H 1.09005 * 109.46730 * 299.99944 * 5 4 3 34 34 H 1.08002 * 126.30040 * 0.02562 * 7 6 5 35 35 H 0.97003 * 119.99628 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.47054 * 30.89684 * 20 11 9 37 37 H 1.08994 * 109.47199 * 150.89901 * 20 11 9 38 38 H 1.08004 * 125.98911 * 180.20597 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 7 5.2858 3.0542 -0.0011 7 6 6.0175 3.7437 -0.8912 8 6 7.3445 3.5944 -0.5392 9 6 8.5053 4.1763 -1.2359 10 8 8.3359 4.9756 -2.1369 11 7 9.7548 3.8228 -0.8748 12 6 10.8324 4.4901 -1.3940 13 1 10.6844 5.4003 -1.9562 14 6 12.1159 3.9928 -1.2024 15 7 13.0653 4.7809 -0.7502 16 14 12.4916 2.2039 -1.5877 17 1 13.0465 2.0993 -2.9612 18 1 13.4839 1.6852 -0.6122 19 1 11.2431 1.4051 -1.4962 20 6 9.9603 2.7249 0.0732 21 6 9.9578 3.2554 1.4463 22 7 9.9537 3.6664 2.5107 23 6 7.3802 2.7839 0.6179 24 7 6.1529 2.4692 0.9284 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8333 0.9768 -0.8908 31 1 3.8340 0.9765 0.8892 32 1 3.4229 3.4215 0.8905 33 1 3.4221 3.4225 -0.8895 34 1 5.6381 4.3095 -1.7294 35 1 13.9612 4.4337 -0.6168 36 1 9.1576 1.9956 -0.0359 37 1 10.9176 2.2447 -0.1290 38 1 8.2681 2.4783 1.1516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331211662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:49 Heat of formation + Delta-G solvation = 76.525969 kcal Electronic energy + Delta-G solvation = -22700.691980 eV Core-core repulsion = 19161.888180 eV Total energy + Delta-G solvation = -3538.803800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22130 -38.75563 -38.33049 -36.28228 -34.59798 -34.10298 -32.40107 -31.59354 -30.04789 -28.82780 -27.76829 -25.41306 -23.60048 -23.17627 -21.89891 -20.65305 -19.26195 -18.48463 -17.47912 -16.78208 -16.75234 -16.53766 -15.97676 -15.45468 -15.21850 -14.63127 -14.39874 -14.15493 -13.89436 -13.49578 -13.18364 -12.96714 -12.80589 -12.63658 -12.56011 -12.34271 -12.11024 -11.99906 -11.82202 -11.57297 -11.52430 -11.47645 -10.89927 -10.74705 -10.61310 -9.99362 -9.77890 -9.39722 -9.26688 -8.69421 -8.35391 -8.22961 -6.80541 -3.81729 1.82009 2.26203 2.49427 2.92520 3.04719 3.10201 3.14795 3.26681 3.41430 3.95258 4.03030 4.24438 4.39611 4.58182 4.61915 4.66731 4.85405 4.89169 4.95514 4.99373 5.02610 5.06072 5.26660 5.30942 5.41438 5.43308 5.51921 5.61904 5.72263 5.73764 5.76792 5.98953 6.58116 6.74439 7.00507 7.25102 7.72199 7.96809 8.06448 8.27712 8.84784 9.17224 9.67759 10.28313 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.003398 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.755643 B = 8238.177787 C = 8335.738526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.390 6.390 4 C 0.053 3.947 5 C 0.138 3.862 6 N -0.369 5.369 7 C 0.110 3.890 8 C -0.256 4.256 9 C 0.524 3.476 10 O -0.570 6.570 11 N -0.433 5.433 12 C -0.355 4.355 13 H 0.122 0.878 14 C 0.081 3.919 15 N -0.789 5.789 16 Si 0.816 3.184 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.251 1.251 20 C 0.175 3.825 21 C 0.196 3.804 22 N -0.427 5.427 23 C 0.048 3.952 24 N -0.300 5.300 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.187 0.813 35 H 0.278 0.722 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.792 -11.318 0.640 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.309 6.309 4 C -0.025 4.025 5 C 0.017 3.983 6 N -0.151 5.151 7 C -0.039 4.039 8 C -0.271 4.271 9 C 0.315 3.685 10 O -0.454 6.454 11 N -0.152 5.152 12 C -0.479 4.479 13 H 0.139 0.861 14 C -0.132 4.132 15 N -0.418 5.418 16 Si 0.639 3.361 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.176 1.176 20 C 0.047 3.953 21 C -0.122 4.122 22 N -0.106 5.106 23 C -0.139 4.139 24 N -0.121 5.121 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.204 0.796 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -18.674 -10.689 2.634 21.677 hybrid contribution 1.292 -0.919 -1.174 1.972 sum -17.382 -11.608 1.460 20.953 Atomic orbital electron populations 1.21752 0.93507 1.02380 1.03228 1.22484 0.95605 0.83185 1.00432 1.87780 1.20265 1.27184 1.95625 1.22622 0.81528 0.96231 1.02076 1.21375 0.74666 0.96949 1.05340 1.48217 1.06136 1.39162 1.21544 1.22857 0.90667 0.95582 0.94762 1.20626 0.94377 1.10404 1.01693 1.16737 0.81002 0.85713 0.85027 1.90636 1.84607 1.37928 1.32188 1.43369 1.05998 1.30261 1.35579 1.18939 0.82208 1.08384 1.38351 0.86070 1.25049 0.95559 0.97912 0.94693 1.70307 1.04150 1.38828 1.28563 0.88031 0.79194 0.88100 0.80778 1.19613 1.20158 1.17573 1.20037 1.05477 0.91143 0.78654 1.30133 0.92660 0.94256 0.95197 1.81292 1.09073 1.07135 1.13063 1.24974 0.95787 0.97170 0.96002 1.77072 1.00292 1.21469 1.13229 0.91757 0.91761 0.90969 0.93184 0.93126 0.92537 0.91542 0.88769 0.87541 0.79588 0.91094 0.86326 0.86969 0.78980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.45 6.66 37.16 0.25 0.69 16 3 O -0.39 -3.78 10.34 -35.23 -0.36 -4.15 16 4 C 0.05 0.52 6.11 37.16 0.23 0.74 16 5 C 0.14 1.39 6.86 -4.04 -0.03 1.36 16 6 N -0.37 -5.12 3.65 -60.78 -0.22 -5.35 16 7 C 0.11 1.70 11.26 -16.53 -0.19 1.51 16 8 C -0.26 -4.81 5.90 -105.07 -0.62 -5.43 16 9 C 0.52 12.04 7.58 -12.55 -0.10 11.94 16 10 O -0.57 -14.85 16.57 5.25 0.09 -14.77 16 11 N -0.43 -10.07 2.50 -119.17 -0.30 -10.37 16 12 C -0.36 -9.38 9.50 -14.98 -0.14 -9.52 16 13 H 0.12 3.59 7.50 -52.49 -0.39 3.20 16 14 C 0.08 2.03 4.94 -17.46 -0.09 1.94 16 15 N -0.79 -20.80 13.96 55.50 0.77 -20.02 16 16 Si 0.82 17.17 26.25 -169.99 -4.46 12.70 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.25 -4.73 5.94 56.52 0.34 -4.39 16 20 C 0.17 3.36 4.27 -6.83 -0.03 3.33 16 21 C 0.20 3.94 12.68 -20.60 -0.26 3.68 16 22 N -0.43 -9.11 18.57 42.35 0.79 -8.32 16 23 C 0.05 0.82 9.33 -16.97 -0.16 0.66 16 24 N -0.30 -4.85 12.33 30.87 0.38 -4.47 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.19 2.41 8.06 -52.49 -0.42 1.98 16 35 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.12 1.86 5.20 -51.93 -0.27 1.59 16 37 H 0.11 2.15 2.71 -51.93 -0.14 2.01 16 38 H 0.19 3.21 3.18 -52.48 -0.17 3.05 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -31.82 327.86 -3.52 -35.34 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.40 Total: 4.06 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -0.75 Total: 10.39 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 1.42 Total: -48.52 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.28 Total: -18.91 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -4.46 Total: 12.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.82 -3.52 -35.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331211662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.870 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds