Wall clock time and date at job start Tue Mar 31 2020 06:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.46940 * 2 1 4 4 C 1.42905 * 113.99984 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47180 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47227 * 180.02562 * 5 4 3 7 7 C 1.34282 * 125.75323 * 125.24794 * 6 5 4 8 8 C 1.38106 * 107.40267 * 180.13307 * 7 6 5 9 9 C 1.47356 * 126.42343 * 179.89350 * 8 7 6 10 10 O 1.21634 * 120.00133 * 7.69012 * 9 8 7 11 11 N 1.34777 * 120.00330 * 187.69097 * 9 8 7 12 12 C 1.36979 * 119.99929 * 188.70909 * 11 9 8 13 13 H 1.08001 * 120.00444 * 10.42048 * 12 11 9 14 14 C 1.38977 * 119.99755 * 190.69484 * 12 11 9 15 15 N 1.31412 * 120.00265 * 230.20118 * 14 12 11 16 16 Si 1.86808 * 119.99826 * 50.20198 * 14 12 11 17 17 H 1.48501 * 109.47027 * 95.34748 * 16 14 12 18 18 H 1.48499 * 109.47046 * 215.34547 * 16 14 12 19 19 H 1.48503 * 109.46984 * 335.35070 * 16 14 12 20 20 C 1.46498 * 119.99863 * 8.70242 * 11 9 8 21 21 C 1.47201 * 109.47036 * 270.89969 * 20 11 9 22 22 N 9.52397 * 152.18756 * 34.40230 * 2 1 3 23 23 C 1.41316 * 107.15715 * 359.63573 * 8 7 6 24 24 N 1.30446 * 108.02779 * 0.22047 * 23 8 7 25 25 H 1.08996 * 109.47260 * 300.00288 * 1 2 3 26 26 H 1.09002 * 109.47052 * 60.00030 * 1 2 3 27 27 H 1.09006 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47403 * 240.00139 * 2 1 3 29 29 H 1.08995 * 109.47432 * 119.99977 * 2 1 3 30 30 H 1.09001 * 109.47328 * 59.99593 * 4 3 2 31 31 H 1.09007 * 109.46622 * 300.00142 * 4 3 2 32 32 H 1.09001 * 109.47402 * 59.99540 * 5 4 3 33 33 H 1.09005 * 109.46730 * 299.99944 * 5 4 3 34 34 H 1.08002 * 126.30040 * 0.02562 * 7 6 5 35 35 H 0.97003 * 119.99628 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.47054 * 30.89684 * 20 11 9 37 37 H 1.08994 * 109.47199 * 150.89901 * 20 11 9 38 38 H 1.08004 * 125.98911 * 180.20597 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 7 5.2858 3.0542 -0.0011 7 6 6.0175 3.7437 -0.8912 8 6 7.3445 3.5944 -0.5392 9 6 8.5053 4.1763 -1.2359 10 8 8.3359 4.9756 -2.1369 11 7 9.7548 3.8228 -0.8748 12 6 10.8324 4.4901 -1.3940 13 1 10.6844 5.4003 -1.9562 14 6 12.1159 3.9928 -1.2024 15 7 13.0653 4.7809 -0.7502 16 14 12.4916 2.2039 -1.5877 17 1 13.0465 2.0993 -2.9612 18 1 13.4839 1.6852 -0.6122 19 1 11.2431 1.4051 -1.4962 20 6 9.9603 2.7249 0.0732 21 6 9.9578 3.2554 1.4463 22 7 9.9537 3.6664 2.5107 23 6 7.3802 2.7839 0.6179 24 7 6.1529 2.4692 0.9284 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8333 0.9768 -0.8908 31 1 3.8340 0.9765 0.8892 32 1 3.4229 3.4215 0.8905 33 1 3.4221 3.4225 -0.8895 34 1 5.6381 4.3095 -1.7294 35 1 13.9612 4.4337 -0.6168 36 1 9.1576 1.9956 -0.0359 37 1 10.9176 2.2447 -0.1290 38 1 8.2681 2.4783 1.1516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331211662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:48 Heat of formation + Delta-G solvation = 53.958340 kcal Electronic energy + Delta-G solvation = -22701.670586 eV Core-core repulsion = 19161.888180 eV Total energy + Delta-G solvation = -3539.782406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.52911 -40.34387 -39.10957 -37.99841 -36.38335 -35.14751 -34.21482 -32.31464 -31.35148 -30.07212 -29.22456 -27.12737 -24.60380 -23.73610 -23.36660 -21.82811 -20.82128 -20.21337 -18.65850 -18.39846 -17.65810 -17.59667 -17.35356 -16.68631 -16.41887 -15.97514 -15.76404 -15.51154 -15.11203 -14.78875 -14.68237 -14.45057 -14.36319 -13.94818 -13.59674 -13.48446 -13.28649 -13.23110 -13.19012 -12.89185 -12.56955 -12.42024 -12.27876 -12.12812 -11.90912 -11.37094 -11.11546 -10.67165 -10.59597 -10.49889 -10.14599 -9.71357 -8.71691 -5.80326 0.54940 1.05620 1.18717 1.26170 1.39450 1.46542 1.51973 1.65429 2.15045 2.34788 2.62114 2.66014 2.90593 3.21873 3.50465 3.81722 3.85363 3.88821 3.92909 4.12350 4.15772 4.22045 4.23192 4.29614 4.37617 4.48932 4.61382 4.64127 4.70586 4.87513 5.03330 5.23970 5.27555 5.43971 5.83193 6.08473 6.10647 6.33915 6.39604 6.47741 6.94989 7.27904 7.86861 8.42860 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.003398 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.755643 B = 8238.177787 C = 8335.738526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.401 6.401 4 C 0.060 3.940 5 C 0.131 3.869 6 N -0.353 5.353 7 C 0.135 3.865 8 C -0.292 4.292 9 C 0.525 3.475 10 O -0.614 6.614 11 N -0.444 5.444 12 C -0.389 4.389 13 H 0.065 0.935 14 C 0.044 3.956 15 N -0.838 5.838 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.261 1.261 19 H -0.211 1.211 20 C 0.176 3.824 21 C 0.209 3.791 22 N -0.451 5.451 23 C 0.049 3.951 24 N -0.305 5.305 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.213 0.787 35 H 0.286 0.714 36 H 0.160 0.840 37 H 0.118 0.882 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.760 -14.182 0.831 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.320 6.320 4 C -0.018 4.018 5 C 0.011 3.989 6 N -0.134 5.134 7 C -0.016 4.016 8 C -0.307 4.307 9 C 0.318 3.682 10 O -0.500 6.500 11 N -0.163 5.163 12 C -0.514 4.514 13 H 0.083 0.917 14 C -0.167 4.167 15 N -0.469 5.469 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.186 1.186 19 H -0.134 1.134 20 C 0.049 3.951 21 C -0.110 4.110 22 N -0.130 5.130 23 C -0.138 4.138 24 N -0.126 5.126 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.229 0.771 35 H 0.097 0.903 36 H 0.177 0.823 37 H 0.135 0.865 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -20.673 -13.597 2.862 24.909 hybrid contribution 1.734 0.082 -1.223 2.124 sum -18.939 -13.515 1.639 23.324 Atomic orbital electron populations 1.21769 0.92464 1.03491 1.02924 1.22695 0.96502 0.82298 1.01003 1.87764 1.19942 1.28598 1.95685 1.22476 0.81824 0.95709 1.01764 1.21760 0.72101 0.97797 1.07274 1.48491 1.07384 1.37448 1.20085 1.23200 0.89716 0.94059 0.94642 1.20307 0.94082 1.13016 1.03264 1.17371 0.81921 0.84598 0.84360 1.90593 1.85480 1.39742 1.34214 1.43309 1.05310 1.31218 1.36417 1.18456 0.84141 1.08276 1.40499 0.91681 1.25810 0.94567 1.03065 0.93258 1.70320 1.04970 1.41857 1.29736 0.86869 0.80844 0.81332 0.80006 1.20210 1.18570 1.13380 1.20359 1.07275 0.90438 0.77031 1.30276 0.91841 0.93653 0.95188 1.81296 1.10087 1.07660 1.13983 1.24894 0.96384 0.97012 0.95463 1.77059 1.00045 1.21668 1.13779 0.92156 0.91937 0.89203 0.92425 0.92757 0.92260 0.92499 0.87905 0.84637 0.77083 0.90324 0.82264 0.86454 0.78793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 71.98 0.74 -0.72 16 2 C 0.05 0.65 6.66 71.98 0.48 1.13 16 3 O -0.40 -6.75 10.34 -148.98 -1.54 -8.29 16 4 C 0.06 0.99 6.11 71.98 0.44 1.43 16 5 C 0.13 2.17 6.86 86.38 0.59 2.76 16 6 N -0.35 -8.74 3.65 -346.22 -1.26 -10.00 16 7 C 0.14 3.82 11.26 84.29 0.95 4.77 16 8 C -0.29 -10.54 5.90 -20.15 -0.12 -10.66 16 9 C 0.52 24.39 7.58 86.64 0.66 25.04 16 10 O -0.61 -33.11 16.57 -4.14 -0.07 -33.18 16 11 N -0.44 -20.84 2.50 -649.20 -1.62 -22.46 16 12 C -0.39 -21.47 9.50 84.07 0.80 -20.67 16 13 H 0.07 4.20 7.50 -2.91 -0.02 4.18 16 14 C 0.04 2.24 4.94 84.93 0.42 2.66 16 15 N -0.84 -45.55 13.96 21.67 0.30 -45.25 16 16 Si 0.89 34.76 26.25 68.60 1.80 36.56 16 17 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 19 H -0.21 -6.87 5.94 99.48 0.59 -6.28 16 20 C 0.18 6.46 4.27 84.57 0.36 6.82 16 21 C 0.21 8.20 12.68 89.39 1.13 9.33 16 22 N -0.45 -19.01 18.57 20.07 0.37 -18.64 16 23 C 0.05 1.60 9.33 85.66 0.80 2.39 16 24 N -0.30 -9.06 12.33 -56.25 -0.69 -9.76 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.14 1.53 8.06 -2.38 -0.02 1.51 16 34 H 0.21 4.83 8.06 -2.91 -0.02 4.81 16 35 H 0.29 14.05 8.31 -92.71 -0.77 13.28 16 36 H 0.16 4.54 5.20 -2.38 -0.01 4.52 16 37 H 0.12 4.17 2.71 -2.39 -0.01 4.16 16 38 H 0.20 6.09 3.18 -2.91 -0.01 6.08 16 Total: -1.00 -72.64 327.86 5.53 -67.11 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.99 Total: 19.60 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 7.25 Total: 24.30 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -2.90 Total: -106.10 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.61 Total: -41.46 kcal Atomic # 14 Polarization: 34.76 SS G_CDS: 1.80 Total: 36.56 kcal Total: -72.64 5.53 -67.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331211662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.071 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds