Wall clock time and date at job start Tue Mar 31 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38806 * 120.07215 * 2 1 4 4 N 1.39680 * 120.03797 * 0.02562 * 3 2 1 5 5 C 1.38938 * 119.92122 * 180.23323 * 3 2 1 6 6 C 1.38170 * 120.06513 * 359.79146 * 5 3 2 7 7 C 1.38141 * 120.14446 * 359.97438 * 6 5 3 8 8 C 1.38710 * 120.06920 * 179.75023 * 2 1 3 9 9 N 1.39938 * 120.03343 * 359.97438 * 8 2 1 10 10 C 1.34776 * 119.99983 * 144.99084 * 9 8 2 11 11 O 1.21586 * 120.00019 * 4.50682 * 10 9 8 12 12 N 1.34777 * 120.00269 * 184.50599 * 10 9 8 13 13 C 1.46494 * 120.00157 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47006 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00009 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00228 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00276 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00135 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99700 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00531 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99647 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47002 * 90.00057 * 21 19 17 23 23 H 1.48502 * 109.46785 * 209.99840 * 21 19 17 24 24 H 1.48493 * 109.47081 * 330.00016 * 21 19 17 25 25 H 1.09000 * 109.47030 * 270.25242 * 1 2 3 26 26 H 1.08999 * 109.47285 * 30.25191 * 1 2 3 27 27 H 1.09002 * 109.47134 * 150.24987 * 1 2 3 28 28 H 0.96995 * 119.99528 * 180.21068 * 4 3 2 29 29 H 0.97000 * 119.99671 * 0.20508 * 4 3 2 30 30 H 1.08000 * 119.96876 * 179.77150 * 5 3 2 31 31 H 1.07997 * 119.93089 * 179.97438 * 6 5 3 32 32 H 1.08002 * 119.96566 * 180.02562 * 7 6 5 33 33 H 0.97000 * 120.00155 * 324.71347 * 9 8 2 34 34 H 0.97002 * 119.99858 * 0.02562 * 12 10 9 35 35 H 1.08998 * 109.47028 * 299.99800 * 13 12 10 36 36 H 1.08998 * 109.47313 * 60.00293 * 13 12 10 37 37 H 0.97007 * 119.99287 * 0.02562 * 16 14 13 38 38 H 0.96998 * 120.00293 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.2012 0.0000 4 7 1.5065 2.4122 0.0005 5 6 3.5919 1.1976 -0.0049 6 6 4.2810 -0.0001 -0.0054 7 6 3.5915 -1.1971 -0.0005 8 6 2.2020 -1.2004 0.0052 9 7 1.5045 -2.4135 0.0111 10 6 1.9971 -3.4773 -0.6539 11 8 3.0862 -3.4081 -1.1900 12 7 1.2826 -4.6179 -0.7246 13 6 1.8178 -5.7740 -1.4478 14 6 0.8321 -6.9116 -1.3763 15 8 -0.2148 -6.7704 -0.7802 16 7 1.1132 -8.0857 -1.9755 17 6 0.2163 -9.1204 -1.9109 18 1 -0.7155 -8.9950 -1.3795 19 6 0.5065 -10.3309 -2.5283 20 7 1.6405 -10.4838 -3.1745 21 14 -0.7155 -11.7411 -2.4396 22 1 -1.6483 -11.6610 -3.5923 23 1 0.0156 -13.0330 -2.4833 24 1 -1.4849 -11.6504 -1.1728 25 1 -0.3633 0.0045 1.0277 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 1.9932 3.2513 -0.0025 29 1 0.5365 2.4140 0.0039 30 1 4.1339 2.1317 -0.0086 31 1 5.3610 -0.0004 -0.0097 32 1 4.1331 -2.1315 -0.0005 33 1 0.6685 -2.4900 0.4970 34 1 0.4136 -4.6730 -0.2971 35 1 1.9867 -5.5040 -2.4903 36 1 2.7604 -6.0814 -0.9948 37 1 1.9504 -8.1984 -2.4525 38 1 1.8429 -11.3287 -3.6058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335111135.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:32 Heat of formation + Delta-G solvation = -38.818995 kcal Electronic energy + Delta-G solvation = -22172.195760 eV Core-core repulsion = 18628.390227 eV Total energy + Delta-G solvation = -3543.805533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.67285 -39.16822 -38.17682 -35.44236 -34.47397 -34.11793 -33.63788 -31.65569 -31.35927 -28.68088 -27.39391 -26.65058 -24.55201 -22.61219 -21.36870 -20.54940 -19.61560 -18.58049 -18.16030 -17.65328 -17.05184 -15.85990 -15.66594 -15.54535 -15.21888 -14.65326 -14.50177 -14.46792 -14.16216 -13.87240 -13.76744 -13.44563 -13.33278 -12.62731 -12.41952 -12.21489 -12.05652 -11.64243 -11.58725 -11.35599 -11.13619 -10.91445 -10.46776 -10.32991 -10.09516 -9.75423 -9.64771 -8.87285 -8.65006 -8.13615 -8.10651 -7.50683 -6.52373 -3.94538 1.33485 1.64723 2.67215 3.10948 3.21664 3.25958 3.27125 3.71922 3.73111 3.89850 4.07590 4.34657 4.79663 4.86486 4.87951 5.09305 5.16238 5.40386 5.45496 5.47453 5.60043 5.70309 5.87397 5.96182 5.97842 6.05500 6.20891 6.36764 6.41965 6.60787 6.73053 6.95667 7.07607 7.36567 7.45103 7.56756 7.91022 8.09329 8.43614 8.66328 9.03484 9.38038 9.85711 10.64455 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.043027 B = 0.002564 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.597433 B =10919.024210 C =11434.683523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.197 4.197 3 C 0.229 3.771 4 N -0.880 5.880 5 C -0.215 4.215 6 C -0.061 4.061 7 C -0.172 4.172 8 C 0.216 3.784 9 N -0.686 5.686 10 C 0.704 3.296 11 O -0.576 6.576 12 N -0.719 5.719 13 C 0.128 3.872 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.548 5.548 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.269 1.269 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.396 0.604 29 H 0.396 0.604 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.406 0.594 34 H 0.408 0.592 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.396 0.604 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.333 21.877 6.127 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.204 4.204 3 C 0.125 3.875 4 N -0.420 5.420 5 C -0.239 4.239 6 C -0.080 4.080 7 C -0.194 4.194 8 C 0.120 3.880 9 N -0.333 5.333 10 C 0.404 3.596 11 O -0.453 6.453 12 N -0.376 5.376 13 C -0.001 4.001 14 C 0.214 3.786 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.224 0.776 29 H 0.225 0.775 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.158 0.842 33 H 0.242 0.758 34 H 0.245 0.755 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.690 21.666 5.879 22.513 hybrid contribution -1.009 -0.569 0.038 1.159 sum 0.682 21.097 5.916 21.921 Atomic orbital electron populations 1.20506 0.91351 1.02581 1.01665 1.18970 0.95567 0.90665 1.15222 1.17221 0.90965 0.85490 0.93839 1.42478 1.08898 1.04920 1.85730 1.20487 0.91807 0.98507 1.13059 1.20748 0.99451 0.91392 0.96406 1.21148 0.92443 0.99428 1.06372 1.17051 0.90898 0.83109 0.96961 1.42581 1.27094 1.09405 1.54264 1.15823 0.84196 0.80029 0.79550 1.90914 1.20332 1.82699 1.51403 1.44781 1.23256 1.11296 1.58258 1.20831 0.96845 0.84875 0.97511 1.19729 0.88726 0.84521 0.85655 1.90492 1.27211 1.82561 1.48246 1.41787 1.20064 1.10219 1.46224 1.19722 1.01016 0.90111 1.32605 0.87676 1.25332 0.97238 0.99015 0.96136 1.69614 1.22794 1.26954 1.34050 0.85811 0.79666 0.79558 0.78977 1.20259 1.20785 1.19321 0.91788 0.92091 0.91562 0.77585 0.77501 0.86548 0.85985 0.84233 0.75808 0.75451 0.89789 0.89767 0.76981 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 9.03 36.01 0.33 -0.56 16 2 C -0.20 -2.20 5.91 -104.24 -0.62 -2.82 16 3 C 0.23 2.34 6.73 -83.81 -0.56 1.78 16 4 N -0.88 -5.99 8.99 32.40 0.29 -5.70 16 5 C -0.22 -2.23 9.89 -39.35 -0.39 -2.62 16 6 C -0.06 -0.70 10.03 -39.64 -0.40 -1.10 16 7 C -0.17 -2.40 8.69 -39.35 -0.34 -2.75 16 8 C 0.22 2.88 6.28 -83.72 -0.53 2.35 16 9 N -0.69 -8.93 4.74 -14.24 -0.07 -9.00 16 10 C 0.70 11.47 8.41 -86.92 -0.73 10.74 16 11 O -0.58 -11.04 13.75 5.29 0.07 -10.97 16 12 N -0.72 -11.87 5.53 -66.42 -0.37 -12.23 16 13 C 0.13 2.33 6.15 -5.20 -0.03 2.30 16 14 C 0.43 9.70 7.85 -10.98 -0.09 9.61 16 15 O -0.60 -15.09 15.24 5.55 0.08 -15.01 16 16 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 17 C -0.31 -8.24 9.68 -14.93 -0.14 -8.38 16 18 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -23.79 13.05 55.50 0.72 -23.06 16 21 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 27 H 0.07 0.60 7.18 -51.93 -0.37 0.22 16 28 H 0.40 1.93 8.84 -40.82 -0.36 1.57 16 29 H 0.40 2.17 6.83 -40.82 -0.28 1.89 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 2.20 6.19 -52.49 -0.33 1.88 16 33 H 0.41 4.17 7.89 -40.82 -0.32 3.85 16 34 H 0.41 6.48 7.46 -40.82 -0.30 6.17 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -32.21 326.49 -7.28 -39.49 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -4.25 Total: 20.56 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -3.60 Total: 9.13 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: 0.52 Total: -63.53 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: 0.16 Total: -25.98 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.21 -7.28 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335111135.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.667 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds