Wall clock time and date at job start Tue Mar 31 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38806 * 120.07215 * 2 1 4 4 N 1.39680 * 120.03797 * 0.02562 * 3 2 1 5 5 C 1.38938 * 119.92122 * 180.23323 * 3 2 1 6 6 C 1.38170 * 120.06513 * 359.79146 * 5 3 2 7 7 C 1.38141 * 120.14446 * 359.97438 * 6 5 3 8 8 C 1.38710 * 120.06920 * 179.75023 * 2 1 3 9 9 N 1.39938 * 120.03343 * 359.97438 * 8 2 1 10 10 C 1.34776 * 119.99983 * 144.99084 * 9 8 2 11 11 O 1.21586 * 120.00019 * 4.50682 * 10 9 8 12 12 N 1.34777 * 120.00269 * 184.50599 * 10 9 8 13 13 C 1.46494 * 120.00157 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47006 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00009 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00228 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00276 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00135 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99700 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00531 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99647 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47002 * 90.00057 * 21 19 17 23 23 H 1.48502 * 109.46785 * 209.99840 * 21 19 17 24 24 H 1.48493 * 109.47081 * 330.00016 * 21 19 17 25 25 H 1.09000 * 109.47030 * 270.25242 * 1 2 3 26 26 H 1.08999 * 109.47285 * 30.25191 * 1 2 3 27 27 H 1.09002 * 109.47134 * 150.24987 * 1 2 3 28 28 H 0.96995 * 119.99528 * 180.21068 * 4 3 2 29 29 H 0.97000 * 119.99671 * 0.20508 * 4 3 2 30 30 H 1.08000 * 119.96876 * 179.77150 * 5 3 2 31 31 H 1.07997 * 119.93089 * 179.97438 * 6 5 3 32 32 H 1.08002 * 119.96566 * 180.02562 * 7 6 5 33 33 H 0.97000 * 120.00155 * 324.71347 * 9 8 2 34 34 H 0.97002 * 119.99858 * 0.02562 * 12 10 9 35 35 H 1.08998 * 109.47028 * 299.99800 * 13 12 10 36 36 H 1.08998 * 109.47313 * 60.00293 * 13 12 10 37 37 H 0.97007 * 119.99287 * 0.02562 * 16 14 13 38 38 H 0.96998 * 120.00293 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.2012 0.0000 4 7 1.5065 2.4122 0.0005 5 6 3.5919 1.1976 -0.0049 6 6 4.2810 -0.0001 -0.0054 7 6 3.5915 -1.1971 -0.0005 8 6 2.2020 -1.2004 0.0052 9 7 1.5045 -2.4135 0.0111 10 6 1.9971 -3.4773 -0.6539 11 8 3.0862 -3.4081 -1.1900 12 7 1.2826 -4.6179 -0.7246 13 6 1.8178 -5.7740 -1.4478 14 6 0.8321 -6.9116 -1.3763 15 8 -0.2148 -6.7704 -0.7802 16 7 1.1132 -8.0857 -1.9755 17 6 0.2163 -9.1204 -1.9109 18 1 -0.7155 -8.9950 -1.3795 19 6 0.5065 -10.3309 -2.5283 20 7 1.6405 -10.4838 -3.1745 21 14 -0.7155 -11.7411 -2.4396 22 1 -1.6483 -11.6610 -3.5923 23 1 0.0156 -13.0330 -2.4833 24 1 -1.4849 -11.6504 -1.1728 25 1 -0.3633 0.0045 1.0277 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 1.9932 3.2513 -0.0025 29 1 0.5365 2.4140 0.0039 30 1 4.1339 2.1317 -0.0086 31 1 5.3610 -0.0004 -0.0097 32 1 4.1331 -2.1315 -0.0005 33 1 0.6685 -2.4900 0.4970 34 1 0.4136 -4.6730 -0.2971 35 1 1.9867 -5.5040 -2.4903 36 1 2.7604 -6.0814 -0.9948 37 1 1.9504 -8.1984 -2.4525 38 1 1.8429 -11.3287 -3.6058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335111135.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:32 Heat of formation + Delta-G solvation = -63.624816 kcal Electronic energy + Delta-G solvation = -22173.271421 eV Core-core repulsion = 18628.390227 eV Total energy + Delta-G solvation = -3544.881194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81265 -40.44875 -39.74418 -36.51512 -36.15742 -35.42555 -34.83538 -33.37695 -32.47238 -29.78875 -28.69065 -27.51688 -26.37618 -23.68835 -22.22569 -21.72351 -21.36971 -20.12029 -19.72329 -18.76871 -17.83976 -17.39822 -17.00822 -16.80729 -16.54648 -16.23672 -15.84400 -15.70387 -15.51803 -15.15177 -14.95143 -14.61145 -14.14460 -13.97265 -13.68282 -13.54335 -13.39502 -13.11308 -12.90853 -12.46186 -12.44942 -12.22666 -12.12317 -11.80356 -11.56706 -11.31221 -10.79074 -10.56254 -10.25266 -10.08620 -9.05339 -8.50681 -8.28913 -6.00943 0.43584 0.74702 1.36775 1.41406 1.47025 1.57099 1.89374 2.03138 2.28545 2.94715 3.00142 3.12100 3.16598 3.27508 4.01597 4.13218 4.19561 4.28795 4.41369 4.44868 4.61202 4.67682 4.78559 4.82182 4.84841 5.22352 5.24867 5.38692 5.40426 5.44326 5.49653 5.76649 5.91460 5.94703 6.10335 6.48044 6.65213 6.89688 7.03671 7.07672 7.38268 7.45907 7.94287 8.66222 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.043027 B = 0.002564 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.597433 B =10919.024210 C =11434.683523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.202 4.202 3 C 0.230 3.770 4 N -0.864 5.864 5 C -0.215 4.215 6 C -0.066 4.066 7 C -0.201 4.201 8 C 0.192 3.808 9 N -0.671 5.671 10 C 0.705 3.295 11 O -0.607 6.607 12 N -0.717 5.717 13 C 0.141 3.859 14 C 0.434 3.566 15 O -0.624 6.624 16 N -0.559 5.559 17 C -0.336 4.336 18 H 0.087 0.913 19 C -0.011 4.011 20 N -0.916 5.916 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.270 1.270 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.408 0.592 29 H 0.405 0.595 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.419 0.581 34 H 0.412 0.588 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.399 0.601 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 23.612 6.356 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.209 4.209 3 C 0.123 3.877 4 N -0.405 5.405 5 C -0.238 4.238 6 C -0.085 4.085 7 C -0.224 4.224 8 C 0.096 3.904 9 N -0.319 5.319 10 C 0.405 3.595 11 O -0.486 6.486 12 N -0.374 5.374 13 C 0.013 3.987 14 C 0.221 3.779 15 O -0.512 6.512 16 N -0.194 5.194 17 C -0.466 4.466 18 H 0.105 0.895 19 C -0.212 4.212 20 N -0.556 5.556 21 Si 0.820 3.180 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.194 1.194 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.238 0.762 29 H 0.235 0.765 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.130 0.870 33 H 0.257 0.743 34 H 0.250 0.750 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.233 0.767 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.969 23.471 6.127 24.276 hybrid contribution -0.772 -0.929 0.002 1.208 sum 0.197 22.542 6.128 23.361 Atomic orbital electron populations 1.20567 0.89513 1.03129 1.02841 1.19218 0.96969 0.90178 1.14577 1.17370 0.91226 0.86303 0.92797 1.42446 1.09459 1.04307 1.84332 1.20789 0.92169 0.98978 1.11870 1.20947 1.00371 0.91150 0.96068 1.21076 0.93067 0.99312 1.08937 1.17265 0.90935 0.83639 0.98559 1.42361 1.27345 1.08668 1.53538 1.15879 0.83725 0.80353 0.79531 1.90899 1.21647 1.83258 1.52821 1.44661 1.23414 1.11029 1.58345 1.20630 0.95719 0.83846 0.98526 1.20369 0.88794 0.84797 0.83913 1.90469 1.28609 1.83153 1.48929 1.41834 1.20028 1.10576 1.47009 1.19733 1.01251 0.91612 1.33963 0.89512 1.26138 0.98912 1.00853 0.95287 1.69682 1.23916 1.27787 1.34243 0.84866 0.77553 0.76655 0.78900 1.19550 1.19701 1.19408 0.90223 0.90358 0.92230 0.76153 0.76464 0.83933 0.84517 0.86962 0.74304 0.75009 0.88830 0.88724 0.76666 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 9.03 71.24 0.64 -0.89 16 2 C -0.20 -4.20 5.91 -19.61 -0.12 -4.31 16 3 C 0.23 4.13 6.73 38.19 0.26 4.39 16 4 N -0.86 -8.88 8.99 -51.41 -0.46 -9.35 16 5 C -0.21 -3.98 9.89 22.42 0.22 -3.76 16 6 C -0.07 -1.49 10.03 22.23 0.22 -1.27 16 7 C -0.20 -5.77 8.69 22.42 0.19 -5.57 16 8 C 0.19 5.07 6.28 38.13 0.24 5.31 16 9 N -0.67 -17.41 4.74 -317.24 -1.50 -18.91 16 10 C 0.70 23.17 8.41 179.05 1.51 24.67 16 11 O -0.61 -23.78 13.75 -3.99 -0.05 -23.84 16 12 N -0.72 -23.67 5.53 -482.31 -2.67 -26.33 16 13 C 0.14 5.17 6.15 85.63 0.53 5.69 16 14 C 0.43 19.89 7.85 87.66 0.69 20.58 16 15 O -0.62 -31.82 15.24 -3.06 -0.05 -31.86 16 16 N -0.56 -27.97 5.29 -306.99 -1.62 -29.59 16 17 C -0.34 -18.45 9.68 84.04 0.81 -17.63 16 18 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 19 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 20 N -0.92 -48.69 13.05 21.66 0.28 -48.40 16 21 Si 1.00 41.63 29.55 68.60 2.03 43.66 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 0.87 6.56 -2.39 -0.02 0.86 16 27 H 0.06 0.97 7.18 -2.39 -0.02 0.96 16 28 H 0.41 2.50 8.84 -92.71 -0.82 1.68 16 29 H 0.40 3.00 6.83 -92.71 -0.63 2.37 16 30 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.11 3.77 6.19 -2.91 -0.02 3.75 16 33 H 0.42 8.38 7.89 -92.71 -0.73 7.65 16 34 H 0.41 13.03 7.46 -92.71 -0.69 12.34 16 35 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.40 19.22 7.90 -92.70 -0.73 18.49 16 38 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -69.60 326.49 -0.82 -70.42 By element: Atomic # 1 Polarization: 49.56 SS G_CDS: -2.43 Total: 47.12 kcal Atomic # 6 Polarization: 21.42 SS G_CDS: 5.66 Total: 27.08 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -5.97 Total: -132.58 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -0.10 Total: -55.70 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -69.60 -0.82 -70.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335111135.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.790 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds