Wall clock time and date at job start Tue Mar 31 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00335 * 2 1 4 4 C 1.52993 * 109.47356 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47280 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47526 * 179.97438 * 5 4 3 7 7 C 1.34285 * 125.75118 * 124.99910 * 6 5 4 8 8 C 1.38110 * 107.40051 * 180.02562 * 7 6 5 9 9 C 1.47362 * 126.41874 * 179.97438 * 8 7 6 10 10 O 1.21633 * 119.99915 * 349.54663 * 9 8 7 11 11 N 1.34773 * 119.99818 * 169.55351 * 9 8 7 12 12 C 1.36986 * 119.99780 * 180.90215 * 11 9 8 13 13 H 1.08002 * 120.00008 * 359.97438 * 12 11 9 14 14 C 1.38976 * 120.00004 * 180.26343 * 12 11 9 15 15 N 1.31408 * 120.00424 * 143.13478 * 14 12 11 16 16 Si 1.86806 * 119.99553 * 323.12867 * 14 12 11 17 17 H 1.48499 * 109.46816 * 96.58981 * 16 14 12 18 18 H 1.48502 * 109.46964 * 216.58513 * 16 14 12 19 19 H 1.48494 * 109.47275 * 336.58871 * 16 14 12 20 20 C 1.46491 * 120.00258 * 0.89616 * 11 9 8 21 21 C 1.47205 * 109.47033 * 83.11296 * 20 11 9 22 22 N 8.26880 * 134.91944 * 356.95976 * 3 1 2 23 23 C 1.41318 * 107.16164 * 0.24172 * 8 7 6 24 24 N 1.30444 * 108.02271 * 359.59234 * 23 8 7 25 25 H 1.08998 * 109.47310 * 59.99899 * 1 2 3 26 26 H 1.09005 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46655 * 299.99758 * 1 2 3 28 28 H 1.08995 * 109.47101 * 59.99778 * 3 2 1 29 29 H 1.09001 * 109.46981 * 300.00507 * 3 2 1 30 30 H 1.09004 * 109.47522 * 59.99865 * 4 3 2 31 31 H 1.09001 * 109.47320 * 300.00091 * 4 3 2 32 32 H 1.09007 * 109.46906 * 60.00158 * 5 4 3 33 33 H 1.09001 * 109.47235 * 300.00408 * 5 4 3 34 34 H 1.07997 * 126.30043 * 0.04174 * 7 6 5 35 35 H 0.96999 * 120.00421 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47517 * 203.11335 * 20 11 9 37 37 H 1.09003 * 109.47393 * 323.11671 * 20 11 9 38 38 H 1.07998 * 125.98689 * 179.76144 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6182 2.4666 -0.0013 7 6 6.4496 3.0274 -0.8943 8 6 7.7367 2.6750 -0.5383 9 6 8.9751 3.0651 -1.2353 10 8 8.9163 3.6008 -2.3258 11 7 10.1728 2.8282 -0.6646 12 6 11.3233 3.2076 -1.3041 13 1 11.2705 3.6961 -2.2659 14 6 12.5586 2.9584 -0.7182 15 7 13.5844 2.6196 -1.4663 16 14 12.7607 3.1052 1.1331 17 1 12.6305 1.7622 1.7533 18 1 14.1010 3.6652 1.4418 19 1 11.7113 4.0049 1.6758 20 6 10.2444 2.1652 0.6397 21 6 10.1582 0.7074 0.4545 22 7 10.0914 -0.4185 0.3105 23 6 7.6432 1.8650 0.6159 24 7 6.3818 1.7526 0.9289 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6887 1.8463 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8568 0.6438 -0.8909 31 1 3.8574 0.6435 0.8891 32 1 3.8366 3.1234 0.8888 33 1 3.8357 3.1230 -0.8912 34 1 6.1644 3.6413 -1.7358 35 1 14.4467 2.4461 -1.0573 36 1 11.1890 2.4148 1.1229 37 1 9.4167 2.5016 1.2643 38 1 8.4711 1.4197 1.1474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348134972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:33 Heat of formation + Delta-G solvation = 88.426102 kcal Electronic energy + Delta-G solvation = -22710.956404 eV Core-core repulsion = 19172.668633 eV Total energy + Delta-G solvation = -3538.287771 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24175 -38.82664 -38.32943 -36.41535 -34.94455 -34.70519 -32.38215 -31.24435 -29.90710 -28.27201 -27.41459 -25.94626 -24.85124 -22.48416 -21.87513 -20.69374 -19.30338 -18.49407 -17.35726 -17.12224 -16.72091 -16.56651 -16.21789 -15.61196 -15.34645 -14.87246 -14.51534 -14.33446 -13.85121 -13.64716 -13.12487 -12.97459 -12.74682 -12.63848 -12.56157 -12.27426 -12.16275 -12.06662 -11.90339 -11.67908 -11.50678 -11.38215 -10.95461 -10.71578 -10.52373 -10.08422 -9.59673 -9.41765 -9.36950 -8.74262 -8.35752 -8.24460 -6.63091 -3.88388 1.82481 2.37617 2.48248 2.83503 2.97275 3.04115 3.09540 3.20171 3.36099 3.93078 3.98405 4.18575 4.35336 4.50553 4.60613 4.68052 4.78108 4.90469 4.91397 4.96467 4.97143 5.00941 5.05338 5.13233 5.19849 5.27836 5.47502 5.53871 5.62181 5.72630 5.87221 5.96540 6.57084 6.73745 7.00348 7.31750 7.72246 7.88639 8.02067 8.28818 8.80852 9.16144 9.61442 10.46672 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.003388 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.495378 B = 8262.842714 C = 8614.863892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.134 4.134 5 C 0.139 3.861 6 N -0.368 5.368 7 C 0.110 3.890 8 C -0.259 4.259 9 C 0.532 3.468 10 O -0.566 6.566 11 N -0.440 5.440 12 C -0.334 4.334 13 H 0.129 0.871 14 C 0.060 3.940 15 N -0.822 5.822 16 Si 0.846 3.154 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.256 1.256 20 C 0.170 3.830 21 C 0.195 3.805 22 N -0.417 5.417 23 C 0.042 3.958 24 N -0.295 5.295 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.187 0.813 35 H 0.278 0.722 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.911 1.178 7.072 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.172 4.172 5 C 0.017 3.983 6 N -0.148 5.148 7 C -0.040 4.040 8 C -0.273 4.273 9 C 0.322 3.678 10 O -0.449 6.449 11 N -0.160 5.160 12 C -0.459 4.459 13 H 0.147 0.853 14 C -0.149 4.149 15 N -0.455 5.455 16 Si 0.674 3.326 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.181 1.181 20 C 0.043 3.957 21 C -0.124 4.124 22 N -0.096 5.096 23 C -0.145 4.145 24 N -0.115 5.115 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.203 0.797 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.145 0.855 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -21.667 -0.900 7.041 22.800 hybrid contribution 0.840 1.019 0.548 1.430 sum -20.827 0.120 7.589 22.167 Atomic orbital electron populations 1.22759 0.80777 1.02945 1.00006 1.87903 1.19870 1.27691 1.95422 1.22390 0.93263 0.85065 1.00466 1.21771 0.93210 0.96777 1.05486 1.21544 0.74595 0.97896 1.04224 1.48359 1.06310 1.38979 1.21171 1.22843 0.89173 0.97334 0.94632 1.20575 0.94658 1.10363 1.01749 1.16683 0.81131 0.83784 0.86167 1.90646 1.86083 1.47294 1.20914 1.43473 1.06797 1.50394 1.15329 1.19210 0.80757 1.40600 1.05358 0.85326 1.25036 0.95701 0.95811 0.98317 1.69997 1.02766 1.35588 1.37180 0.87379 0.78479 0.79087 0.87616 1.19885 1.20754 1.18126 1.19900 1.04852 0.80464 0.90494 1.29792 0.93083 0.95620 0.93950 1.81117 1.08646 1.12920 1.06905 1.24973 0.94864 0.98126 0.96495 1.77076 1.03532 1.17146 1.13793 0.93971 0.89511 0.93988 0.92876 0.92957 0.90258 0.89300 0.89362 0.88213 0.79652 0.91170 0.88732 0.85474 0.78909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.82 10.70 -35.23 -0.38 -4.20 16 3 C 0.07 0.49 5.94 37.15 0.22 0.71 16 4 C -0.13 -1.25 5.76 -26.74 -0.15 -1.41 16 5 C 0.14 1.19 6.49 -4.04 -0.03 1.17 16 6 N -0.37 -4.95 3.65 -60.78 -0.22 -5.17 16 7 C 0.11 1.66 11.27 -16.53 -0.19 1.47 16 8 C -0.26 -4.84 5.94 -105.06 -0.62 -5.47 16 9 C 0.53 12.30 7.54 -12.55 -0.09 12.21 16 10 O -0.57 -14.86 16.49 5.25 0.09 -14.77 16 11 N -0.44 -10.41 2.59 -119.17 -0.31 -10.72 16 12 C -0.33 -9.01 9.81 -14.98 -0.15 -9.16 16 13 H 0.13 3.87 7.38 -52.49 -0.39 3.48 16 14 C 0.06 1.56 5.31 -17.46 -0.09 1.47 16 15 N -0.82 -22.61 13.96 55.50 0.77 -21.84 16 16 Si 0.85 18.17 24.67 -169.99 -4.19 13.97 16 17 H -0.27 -5.54 7.00 56.52 0.40 -5.15 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 19 H -0.26 -5.03 6.95 56.52 0.39 -4.64 16 20 C 0.17 3.37 4.37 -6.83 -0.03 3.34 16 21 C 0.19 4.03 12.88 -20.72 -0.27 3.76 16 22 N -0.42 -9.06 18.54 42.19 0.78 -8.28 16 23 C 0.04 0.72 9.26 -16.97 -0.16 0.57 16 24 N -0.29 -4.73 12.33 30.87 0.38 -4.35 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.19 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.10 1.93 0.84 -51.93 -0.04 1.89 16 37 H 0.13 2.04 4.87 -51.93 -0.25 1.79 16 38 H 0.19 3.19 3.30 -52.49 -0.17 3.01 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -33.53 325.53 -2.85 -36.37 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.23 Total: 4.09 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -0.45 Total: 9.98 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 1.41 Total: -50.36 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.29 Total: -18.97 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -4.19 Total: 13.97 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.53 -2.85 -36.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348134972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.800 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds