Wall clock time and date at job start Tue Mar 31 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99692 * 2 1 4 4 N 1.46505 * 109.46793 * 180.02562 * 3 2 1 5 5 C 1.35028 * 124.88486 * 359.97346 * 4 3 2 6 6 C 1.35366 * 107.22946 * 179.72721 * 5 4 3 7 7 C 1.41503 * 105.49780 * 0.41619 * 6 5 4 8 8 C 1.47714 * 126.51577 * 179.84513 * 7 6 5 9 9 O 1.21573 * 119.99998 * 5.69824 * 8 7 6 10 10 N 1.34779 * 120.00064 * 185.70569 * 8 7 6 11 11 C 1.46497 * 119.99835 * 5.22140 * 10 8 7 12 12 C 1.50700 * 109.47165 * 274.57597 * 11 10 8 13 13 H 1.08000 * 119.99755 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00024 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00010 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00045 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47211 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47139 * 120.00013 * 16 14 12 19 19 H 1.48500 * 109.47154 * 240.00334 * 16 14 12 20 20 C 1.46502 * 119.99797 * 185.22267 * 10 8 7 21 21 C 1.53001 * 109.46712 * 268.35426 * 20 10 8 22 22 C 1.47207 * 109.46631 * 180.02562 * 21 20 10 23 23 N 8.93604 * 161.04241 * 204.17799 * 4 1 2 24 24 N 1.28465 * 124.88246 * 179.97438 * 4 3 2 25 25 H 1.08998 * 109.47174 * 299.99790 * 1 2 3 26 26 H 1.09001 * 109.47109 * 59.99717 * 1 2 3 27 27 H 1.09006 * 109.47351 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46875 * 60.00353 * 3 2 1 29 29 H 1.08998 * 109.47195 * 300.00145 * 3 2 1 30 30 H 1.07999 * 126.38832 * 0.02562 * 5 4 3 31 31 H 1.07994 * 127.25128 * 180.25873 * 6 5 4 32 32 H 1.08998 * 109.47155 * 34.58106 * 11 10 8 33 33 H 1.09000 * 109.47146 * 154.57841 * 11 10 8 34 34 H 0.97002 * 119.99536 * 179.97438 * 15 14 12 35 35 H 1.08994 * 109.47503 * 28.35239 * 20 10 8 36 36 H 1.09006 * 109.46800 * 148.36033 * 20 10 8 37 37 H 1.09000 * 109.47367 * 299.99974 * 21 20 10 38 38 H 1.08997 * 109.47524 * 60.00992 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 7 3.4706 1.1898 -0.0006 5 6 4.1530 0.0246 -0.0006 6 6 5.4713 0.3321 -0.0074 7 6 5.5299 1.7459 -0.0016 8 6 6.7524 2.5749 -0.0023 9 8 7.8432 2.0495 -0.1129 10 7 6.6587 3.9139 0.1198 11 6 5.3565 4.5374 0.3678 12 6 4.6489 4.7615 -0.9438 13 1 5.1218 4.4683 -1.8694 14 6 3.3975 5.3398 -0.9619 15 7 2.8214 5.6963 0.1654 16 14 2.5201 5.6169 -2.5876 17 1 3.3751 5.1316 -3.7006 18 1 1.2354 4.8721 -2.5900 19 1 2.2521 7.0667 -2.7646 20 6 7.8592 4.7457 0.0045 21 6 8.4699 4.9547 1.3916 22 6 9.6758 5.7910 1.2758 23 7 10.6064 6.4364 1.1857 24 7 4.2863 2.1823 -0.0012 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6885 1.8464 0.8901 29 1 1.6885 1.8464 -0.8899 30 1 3.7266 -0.9676 -0.0005 31 1 6.3031 -0.3567 -0.0132 32 1 4.7545 3.8831 0.9983 33 1 5.5014 5.4937 0.8704 34 1 1.9411 6.1035 0.1525 35 1 8.5843 4.2498 -0.6408 36 1 7.5920 5.7117 -0.4242 37 1 7.7449 5.4506 2.0370 38 1 8.7371 3.9888 1.8203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350603783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:07 Heat of formation + Delta-G solvation = 50.843433 kcal Electronic energy + Delta-G solvation = -23419.587129 eV Core-core repulsion = 19879.669651 eV Total energy + Delta-G solvation = -3539.917478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.03374 -38.94400 -38.02791 -36.57131 -35.12216 -32.83952 -32.28645 -31.05750 -29.93918 -27.49019 -27.08712 -25.70996 -24.14746 -23.07455 -21.40357 -20.74434 -18.52884 -17.43618 -17.25977 -16.66065 -16.49091 -16.33503 -16.06712 -15.31890 -14.85999 -14.61105 -14.45651 -14.13895 -14.04618 -13.29594 -13.03526 -12.81945 -12.60719 -12.45982 -12.29714 -12.17712 -12.04955 -11.68910 -11.61031 -11.43083 -10.94828 -10.87352 -10.58691 -10.18629 -10.18107 -9.73698 -9.63538 -9.34216 -8.67190 -8.49881 -8.38603 -7.79038 -6.08026 -4.07204 2.33237 2.44191 2.68571 2.93418 3.00569 3.18391 3.29222 3.35425 3.71653 3.82372 4.13664 4.38696 4.46414 4.98294 5.05478 5.09311 5.20486 5.23594 5.28114 5.33935 5.37041 5.40766 5.42047 5.74611 5.76213 6.10611 6.22109 6.28120 6.32686 6.59652 6.71486 6.98550 7.20256 7.40355 7.63104 7.76748 7.85050 8.19501 8.24244 8.59083 8.91770 9.00693 9.54029 11.00264 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013302 B = 0.005777 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.422299 B = 4845.486112 C = 6433.875010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.402 6.402 3 C 0.310 3.690 4 N -0.298 5.298 5 C -0.020 4.020 6 C -0.192 4.192 7 C -0.022 4.022 8 C 0.606 3.394 9 O -0.565 6.565 10 N -0.587 5.587 11 C 0.235 3.765 12 C -0.497 4.497 13 H 0.055 0.945 14 C 0.069 3.931 15 N -0.894 5.894 16 Si 0.882 3.118 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.285 1.285 20 C 0.128 3.872 21 C -0.046 4.046 22 C 0.223 3.777 23 N -0.453 5.453 24 N -0.171 5.171 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.173 0.827 31 H 0.154 0.846 32 H 0.060 0.940 33 H 0.034 0.966 34 H 0.259 0.741 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.101 -9.535 2.369 11.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.320 6.320 3 C 0.150 3.850 4 N -0.088 5.088 5 C -0.161 4.161 6 C -0.221 4.221 7 C -0.182 4.182 8 C 0.393 3.607 9 O -0.444 6.444 10 N -0.316 5.316 11 C 0.115 3.885 12 C -0.537 4.537 13 H 0.073 0.927 14 C -0.132 4.132 15 N -0.534 5.534 16 Si 0.711 3.289 17 H -0.199 1.199 18 H -0.214 1.214 19 H -0.211 1.211 20 C 0.002 3.998 21 C -0.088 4.088 22 C -0.095 4.095 23 N -0.130 5.130 24 N -0.006 5.006 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.190 0.810 31 H 0.172 0.828 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.011 -7.935 2.246 9.170 hybrid contribution -1.009 -0.568 -0.945 1.495 sum -5.020 -8.502 1.300 9.959 Atomic orbital electron populations 1.22760 0.78066 1.03529 1.01059 1.87650 1.21545 1.27029 1.95781 1.22146 0.74856 0.84385 1.03588 1.45640 1.06466 1.04402 1.52283 1.22662 0.91900 0.92816 1.08698 1.21655 0.95994 0.94512 1.09917 1.21858 0.91623 0.92969 1.11788 1.16939 0.86097 0.81636 0.75997 1.90694 1.27420 1.73206 1.53120 1.48117 1.10030 1.04982 1.68498 1.19733 0.77207 0.93824 0.97700 1.21308 1.01444 1.38337 0.92596 0.92699 1.24730 0.96984 0.95852 0.95681 1.69938 1.15767 1.42558 1.25136 0.86701 0.79542 0.77858 0.84844 1.19924 1.21369 1.21077 1.21145 0.87963 0.96815 0.93850 1.19808 0.88942 0.98175 1.01842 1.29144 0.94253 0.93276 0.92846 1.81173 1.12055 1.10852 1.08950 1.74699 0.99361 1.12056 1.14454 0.93087 0.93188 0.88656 0.89354 0.89636 0.80962 0.82819 0.92230 0.94780 0.93170 0.89941 0.89286 0.86964 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 11.01 101.05 1.11 1.46 16 2 O -0.40 -4.85 9.75 -35.23 -0.34 -5.19 16 3 C 0.31 4.50 7.53 59.85 0.45 4.95 16 4 N -0.30 -5.25 3.70 -66.12 -0.24 -5.50 16 5 C -0.02 -0.31 10.83 -17.17 -0.19 -0.50 16 6 C -0.19 -3.34 10.81 -39.36 -0.43 -3.77 16 7 C -0.02 -0.44 6.72 -82.77 -0.56 -1.00 16 8 C 0.61 12.60 7.63 -12.39 -0.09 12.51 16 9 O -0.57 -12.23 16.54 5.30 0.09 -12.14 16 10 N -0.59 -11.58 2.47 -176.22 -0.43 -12.02 16 11 C 0.23 5.25 4.75 -5.20 -0.02 5.22 16 12 C -0.50 -12.33 7.82 -34.44 -0.27 -12.60 16 13 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 14 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -23.13 13.29 55.43 0.74 -22.39 16 16 Si 0.88 19.96 29.54 -169.99 -5.02 14.94 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.13 2.09 5.32 -4.04 -0.02 2.07 16 21 C -0.05 -0.62 6.03 -29.51 -0.18 -0.80 16 22 C 0.22 3.27 15.43 -20.75 -0.32 2.95 16 23 N -0.45 -7.66 18.54 42.16 0.78 -6.88 16 24 N -0.17 -3.55 7.59 33.42 0.25 -3.29 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.17 2.18 7.71 -52.49 -0.40 1.77 16 31 H 0.15 2.38 8.06 -52.49 -0.42 1.95 16 32 H 0.06 1.43 5.88 -51.93 -0.31 1.12 16 33 H 0.03 0.78 8.04 -51.93 -0.42 0.36 16 34 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.08 1.37 7.45 -51.93 -0.39 0.98 16 36 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 37 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -30.72 340.39 -4.52 -35.25 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.86 Total: -0.01 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -0.61 Total: 12.11 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 1.09 Total: -50.08 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.26 Total: -17.33 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.72 -4.52 -35.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350603783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.090 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds