Wall clock time and date at job start Tue Mar 31 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35353 * 116.99929 * 2 1 4 4 C 1.38989 * 126.40747 * 263.90889 * 3 2 1 5 5 C 1.46924 * 126.49780 * 359.97438 * 4 3 2 6 6 O 1.21666 * 120.00070 * 339.94120 * 5 4 3 7 7 N 1.34771 * 119.99958 * 159.94210 * 5 4 3 8 8 C 1.46501 * 120.00282 * 5.91367 * 7 5 4 9 9 C 1.50695 * 109.47310 * 87.79630 * 8 7 5 10 10 H 1.08003 * 119.99995 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00177 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00403 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99774 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47156 * 90.00046 * 13 11 9 15 15 H 1.48502 * 109.47190 * 209.99865 * 13 11 9 16 16 H 1.48494 * 109.47081 * 329.99796 * 13 11 9 17 17 C 1.46502 * 119.99915 * 185.91123 * 7 5 4 18 18 C 1.52997 * 109.47292 * 85.97594 * 17 7 5 19 19 C 1.47202 * 109.47549 * 180.02562 * 18 17 7 20 20 N 7.86222 * 83.67873 * 278.79802 * 2 1 3 21 21 C 1.41463 * 107.00437 * 179.71729 * 4 3 2 22 22 N 1.30309 * 108.13768 * 0.25829 * 21 4 3 23 23 N 1.34660 * 126.40310 * 84.07261 * 3 2 1 24 24 C 1.46507 * 125.73949 * 0.02562 * 23 3 2 25 25 H 1.08999 * 109.46699 * 304.82277 * 1 2 3 26 26 H 1.08998 * 109.47651 * 64.82783 * 1 2 3 27 27 H 1.09004 * 109.46964 * 184.82966 * 1 2 3 28 28 H 1.09001 * 109.47459 * 207.80232 * 8 7 5 29 29 H 1.09004 * 109.46735 * 327.79646 * 8 7 5 30 30 H 0.96992 * 120.00381 * 180.02562 * 12 11 9 31 31 H 1.09002 * 109.47087 * 205.97406 * 17 7 5 32 32 H 1.08996 * 109.47196 * 325.97355 * 17 7 5 33 33 H 1.09002 * 109.46901 * 299.99925 * 18 17 7 34 34 H 1.09001 * 109.47613 * 59.99636 * 18 17 7 35 35 H 1.08006 * 125.92891 * 180.23063 * 21 4 3 36 36 H 1.08993 * 109.46681 * 275.56875 * 24 23 3 37 37 H 1.08998 * 109.47387 * 35.56993 * 24 23 3 38 38 H 1.09005 * 109.46580 * 155.57159 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5238 1.8872 -1.1123 5 6 2.4610 1.4345 -2.5086 6 8 2.2984 0.2550 -2.7590 7 7 2.5834 2.3257 -3.5121 8 6 2.9079 3.7231 -3.2152 9 6 4.4045 3.8901 -3.1582 10 1 5.0495 3.0402 -3.3259 11 6 4.9504 5.1277 -2.8909 12 7 6.2565 5.2734 -2.8406 13 14 3.8348 6.5973 -2.5988 14 1 3.5196 6.6994 -1.1512 15 1 4.5214 7.8363 -3.0445 16 1 2.5767 6.4244 -3.3684 17 6 2.3920 1.8971 -4.8999 18 6 0.9043 1.9581 -5.2520 19 6 0.7118 1.5269 -6.6462 20 7 0.5634 1.1952 -7.7225 21 6 3.0792 3.1017 -0.6457 22 7 2.9446 3.1379 0.6499 23 7 2.3066 1.9689 1.0780 24 6 1.9748 1.6337 2.4651 25 1 -0.3633 0.5868 0.8436 26 1 -0.3634 0.4371 -0.9300 27 1 -0.3633 -1.0241 0.0865 28 1 2.5002 4.3648 -3.9964 29 1 2.4744 4.0005 -2.2543 30 1 6.6405 6.1439 -2.6522 31 1 2.9499 2.5571 -5.5642 32 1 2.7515 0.8749 -5.0174 33 1 0.3464 1.2981 -4.5877 34 1 0.5447 2.9803 -5.1345 35 1 3.5359 3.8659 -1.2572 36 1 0.9457 1.9261 2.6733 37 1 2.0850 0.5598 2.6158 38 1 2.6470 2.1660 3.1382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464371712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:32 Heat of formation + Delta-G solvation = 63.562126 kcal Electronic energy + Delta-G solvation = -23809.130575 eV Core-core repulsion = 20269.764620 eV Total energy + Delta-G solvation = -3539.365954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24139 -38.92009 -37.95018 -36.64086 -35.28934 -33.45206 -32.70874 -31.31883 -29.55079 -28.04752 -27.36972 -26.57114 -24.10416 -22.83289 -21.41497 -20.77772 -19.06069 -17.63313 -17.27738 -16.95415 -16.54306 -16.24150 -15.73560 -15.10000 -14.76276 -14.60082 -14.44499 -14.14631 -13.91527 -13.65806 -13.46553 -13.02735 -12.72993 -12.62980 -12.46549 -12.34017 -12.20721 -11.89598 -11.70018 -11.19845 -11.11558 -10.98563 -10.76033 -10.50406 -10.36009 -9.99887 -9.71756 -9.19408 -9.07773 -8.79568 -8.26712 -7.85653 -6.31570 -4.35175 1.55725 2.41392 2.70856 2.84631 2.91685 3.13381 3.19251 3.23548 3.60234 3.65721 3.99250 4.16398 4.32832 4.69736 4.97344 4.98128 5.07088 5.18007 5.19564 5.29716 5.34754 5.40388 5.46984 5.55750 5.61865 5.83792 5.92979 6.16807 6.25833 6.32152 6.34494 6.58161 7.02356 7.23407 7.31220 7.57125 7.67816 7.94104 8.03268 8.31474 8.78404 8.92271 9.23638 10.80047 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.008200 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.162641 B = 3413.741411 C = 5789.513530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.295 6.295 3 C 0.300 3.700 4 C -0.279 4.279 5 C 0.600 3.400 6 O -0.559 6.559 7 N -0.588 5.588 8 C 0.189 3.811 9 C -0.548 4.548 10 H 0.085 0.915 11 C 0.079 3.921 12 N -0.878 5.878 13 Si 0.854 3.146 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.259 1.259 17 C 0.129 3.871 18 C -0.046 4.046 19 C 0.221 3.779 20 N -0.449 5.449 21 C 0.094 3.906 22 N -0.295 5.295 23 N -0.382 5.382 24 C 0.098 3.902 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.039 0.961 29 H 0.044 0.956 30 H 0.270 0.730 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.238 0.762 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.552 -3.881 8.132 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.204 6.204 3 C 0.127 3.873 4 C -0.295 4.295 5 C 0.390 3.610 6 O -0.439 6.439 7 N -0.318 5.318 8 C 0.067 3.933 9 C -0.586 4.586 10 H 0.103 0.897 11 C -0.126 4.126 12 N -0.513 5.513 13 Si 0.679 3.321 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.183 1.183 17 C 0.003 3.997 18 C -0.088 4.088 19 C -0.097 4.097 20 N -0.126 5.126 21 C -0.091 4.091 22 N -0.118 5.118 23 N -0.171 5.171 24 C -0.044 4.044 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.254 0.746 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.468 -4.466 7.601 15.270 hybrid contribution -0.560 0.732 0.077 0.925 sum -13.028 -3.735 7.679 15.577 Atomic orbital electron populations 1.23082 0.77929 1.03670 1.01132 1.86058 1.20494 1.20860 1.93023 1.19252 0.96664 0.84551 0.86795 1.19978 1.17748 0.98582 0.93188 1.16957 0.75643 0.84734 0.83663 1.90731 1.51957 1.16432 1.84812 1.47557 1.68715 1.11135 1.04413 1.20433 0.97292 0.77800 0.97733 1.21437 0.89783 0.97059 1.50333 0.89706 1.24921 0.94966 0.98299 0.94440 1.69868 1.10217 1.24665 1.46590 0.87183 0.81635 0.83256 0.79997 1.18961 1.20476 1.18310 1.21116 0.91978 1.02814 0.83760 1.19806 1.01059 1.03743 0.84185 1.29075 0.92968 0.92850 0.94830 1.81183 1.08973 1.09801 1.12652 1.25981 0.94422 0.97614 0.91094 1.77362 1.19131 1.00802 1.14473 1.48986 1.46424 1.15202 1.06493 1.21847 1.01768 1.02157 0.78615 0.93767 0.92512 0.88033 0.94318 0.93846 0.92005 0.88965 0.89654 0.87353 0.87200 0.74639 0.91076 0.89668 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.13 101.05 1.12 1.52 16 2 O -0.30 -4.59 10.01 -19.68 -0.20 -4.78 16 3 C 0.30 5.20 6.98 -16.03 -0.11 5.09 16 4 C -0.28 -5.49 5.87 -104.87 -0.62 -6.10 16 5 C 0.60 12.01 7.59 -12.75 -0.10 11.91 16 6 O -0.56 -12.01 16.19 3.29 0.05 -11.96 16 7 N -0.59 -10.86 2.47 -176.52 -0.44 -11.29 16 8 C 0.19 3.72 3.75 -5.20 -0.02 3.70 16 9 C -0.55 -13.22 8.10 -34.44 -0.28 -13.50 16 10 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 11 C 0.08 1.98 5.14 -17.82 -0.09 1.89 16 12 N -0.88 -24.07 13.96 55.43 0.77 -23.29 16 13 Si 0.85 18.06 26.88 -169.99 -4.57 13.49 16 14 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.26 -5.03 6.54 56.52 0.37 -4.66 16 17 C 0.13 1.99 5.36 -4.04 -0.02 1.96 16 18 C -0.05 -0.56 6.00 -29.52 -0.18 -0.74 16 19 C 0.22 3.02 15.43 -20.76 -0.32 2.70 16 20 N -0.45 -7.24 18.54 42.15 0.78 -6.46 16 21 C 0.09 1.90 9.50 -16.97 -0.16 1.74 16 22 N -0.30 -5.61 12.47 30.88 0.39 -5.23 16 23 N -0.38 -6.09 3.99 -67.67 -0.27 -6.36 16 24 C 0.10 0.99 11.38 59.85 0.68 1.68 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.72 7.12 -51.93 -0.37 0.35 16 29 H 0.04 0.85 3.93 -51.93 -0.20 0.65 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.09 1.39 8.04 -51.93 -0.42 0.98 16 32 H 0.09 1.39 7.47 -51.93 -0.39 1.00 16 33 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.24 5.14 2.79 -52.48 -0.15 4.99 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 332.35 15.07 5.01 5.01 Total: -1.00 -31.91 332.35 -3.06 -34.97 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.50 Total: 4.06 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -0.09 Total: 11.86 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 1.23 Total: -52.63 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.14 Total: -16.74 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -4.57 Total: 13.49 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.91 -3.06 -34.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464371712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.530 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds