Wall clock time and date at job start Tue Mar 31 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35353 * 116.99929 * 2 1 4 4 C 1.38989 * 126.40747 * 263.90889 * 3 2 1 5 5 C 1.46924 * 126.49780 * 359.97438 * 4 3 2 6 6 O 1.21666 * 120.00070 * 339.94120 * 5 4 3 7 7 N 1.34771 * 119.99958 * 159.94210 * 5 4 3 8 8 C 1.46501 * 120.00282 * 5.91367 * 7 5 4 9 9 C 1.50695 * 109.47310 * 87.79630 * 8 7 5 10 10 H 1.08003 * 119.99995 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00177 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00403 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99774 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47156 * 90.00046 * 13 11 9 15 15 H 1.48502 * 109.47190 * 209.99865 * 13 11 9 16 16 H 1.48494 * 109.47081 * 329.99796 * 13 11 9 17 17 C 1.46502 * 119.99915 * 185.91123 * 7 5 4 18 18 C 1.52997 * 109.47292 * 85.97594 * 17 7 5 19 19 C 1.47202 * 109.47549 * 180.02562 * 18 17 7 20 20 N 7.86222 * 83.67873 * 278.79802 * 2 1 3 21 21 C 1.41463 * 107.00437 * 179.71729 * 4 3 2 22 22 N 1.30309 * 108.13768 * 0.25829 * 21 4 3 23 23 N 1.34660 * 126.40310 * 84.07261 * 3 2 1 24 24 C 1.46507 * 125.73949 * 0.02562 * 23 3 2 25 25 H 1.08999 * 109.46699 * 304.82277 * 1 2 3 26 26 H 1.08998 * 109.47651 * 64.82783 * 1 2 3 27 27 H 1.09004 * 109.46964 * 184.82966 * 1 2 3 28 28 H 1.09001 * 109.47459 * 207.80232 * 8 7 5 29 29 H 1.09004 * 109.46735 * 327.79646 * 8 7 5 30 30 H 0.96992 * 120.00381 * 180.02562 * 12 11 9 31 31 H 1.09002 * 109.47087 * 205.97406 * 17 7 5 32 32 H 1.08996 * 109.47196 * 325.97355 * 17 7 5 33 33 H 1.09002 * 109.46901 * 299.99925 * 18 17 7 34 34 H 1.09001 * 109.47613 * 59.99636 * 18 17 7 35 35 H 1.08006 * 125.92891 * 180.23063 * 21 4 3 36 36 H 1.08993 * 109.46681 * 275.56875 * 24 23 3 37 37 H 1.08998 * 109.47387 * 35.56993 * 24 23 3 38 38 H 1.09005 * 109.46580 * 155.57159 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5238 1.8872 -1.1123 5 6 2.4610 1.4345 -2.5086 6 8 2.2984 0.2550 -2.7590 7 7 2.5834 2.3257 -3.5121 8 6 2.9079 3.7231 -3.2152 9 6 4.4045 3.8901 -3.1582 10 1 5.0495 3.0402 -3.3259 11 6 4.9504 5.1277 -2.8909 12 7 6.2565 5.2734 -2.8406 13 14 3.8348 6.5973 -2.5988 14 1 3.5196 6.6994 -1.1512 15 1 4.5214 7.8363 -3.0445 16 1 2.5767 6.4244 -3.3684 17 6 2.3920 1.8971 -4.8999 18 6 0.9043 1.9581 -5.2520 19 6 0.7118 1.5269 -6.6462 20 7 0.5634 1.1952 -7.7225 21 6 3.0792 3.1017 -0.6457 22 7 2.9446 3.1379 0.6499 23 7 2.3066 1.9689 1.0780 24 6 1.9748 1.6337 2.4651 25 1 -0.3633 0.5868 0.8436 26 1 -0.3634 0.4371 -0.9300 27 1 -0.3633 -1.0241 0.0865 28 1 2.5002 4.3648 -3.9964 29 1 2.4744 4.0005 -2.2543 30 1 6.6405 6.1439 -2.6522 31 1 2.9499 2.5571 -5.5642 32 1 2.7515 0.8749 -5.0174 33 1 0.3464 1.2981 -4.5877 34 1 0.5447 2.9803 -5.1345 35 1 3.5359 3.8659 -1.2572 36 1 0.9457 1.9261 2.6733 37 1 2.0850 0.5598 2.6158 38 1 2.6470 2.1660 3.1382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464371712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:32 Heat of formation + Delta-G solvation = 40.477031 kcal Electronic energy + Delta-G solvation = -23810.131619 eV Core-core repulsion = 20269.764620 eV Total energy + Delta-G solvation = -3540.366999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.58159 -40.36894 -39.13029 -37.85326 -36.81599 -34.87539 -34.25022 -32.64640 -30.86143 -29.68921 -28.42888 -27.57755 -25.35571 -24.57923 -22.82667 -22.02888 -20.42735 -19.14955 -18.58146 -18.42804 -17.94284 -17.40476 -17.06619 -16.33433 -16.15060 -15.85722 -15.65146 -15.47162 -15.37110 -14.97200 -14.65003 -14.53342 -14.17063 -13.63323 -13.59032 -13.50156 -13.48671 -13.08947 -12.85981 -12.69218 -12.63085 -12.29176 -12.18361 -11.94188 -11.78173 -11.60207 -11.19387 -10.80418 -10.68373 -10.30850 -9.69276 -9.34643 -8.24075 -6.31743 0.28506 1.20434 1.22902 1.48436 1.50058 1.57545 1.69105 1.82155 2.28457 2.37306 2.39586 2.65584 3.10192 3.19759 3.56548 3.99132 4.15226 4.16970 4.26534 4.31064 4.37020 4.42761 4.48815 4.58973 4.62523 4.67141 4.72474 4.79125 4.93324 4.96934 5.10793 5.22885 5.47779 5.53649 5.77811 6.25410 6.39872 6.54504 6.58640 6.64384 6.79255 7.28725 7.43581 8.91723 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.008200 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.162641 B = 3413.741411 C = 5789.513530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.310 6.310 3 C 0.315 3.685 4 C -0.315 4.315 5 C 0.598 3.402 6 O -0.582 6.582 7 N -0.587 5.587 8 C 0.196 3.804 9 C -0.539 4.539 10 H 0.032 0.968 11 C 0.026 3.974 12 N -0.936 5.936 13 Si 0.916 3.084 14 H -0.260 1.260 15 H -0.288 1.288 16 H -0.221 1.221 17 C 0.123 3.877 18 C -0.030 4.030 19 C 0.245 3.755 20 N -0.491 5.491 21 C 0.079 3.921 22 N -0.310 5.310 23 N -0.370 5.370 24 C 0.083 3.917 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.129 0.871 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.269 0.731 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.141 0.859 35 H 0.220 0.780 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.740 -3.587 9.600 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.219 6.219 3 C 0.140 3.860 4 C -0.331 4.331 5 C 0.388 3.612 6 O -0.464 6.464 7 N -0.316 5.316 8 C 0.074 3.926 9 C -0.577 4.577 10 H 0.050 0.950 11 C -0.174 4.174 12 N -0.575 5.575 13 Si 0.737 3.263 14 H -0.184 1.184 15 H -0.214 1.214 16 H -0.143 1.143 17 C -0.001 4.001 18 C -0.071 4.071 19 C -0.072 4.072 20 N -0.169 5.169 21 C -0.105 4.105 22 N -0.134 5.134 23 N -0.159 5.159 24 C -0.056 4.056 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.147 0.853 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.235 0.765 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.696 -4.186 9.067 18.603 hybrid contribution 0.452 0.456 -0.238 0.685 sum -15.243 -3.729 8.829 18.006 Atomic orbital electron populations 1.23430 0.75011 1.06038 1.02010 1.86035 1.23176 1.19685 1.93048 1.19226 0.95657 0.84549 0.86574 1.20070 1.19891 0.99372 0.93761 1.17123 0.75282 0.84558 0.84220 1.90701 1.53382 1.17136 1.85210 1.47541 1.68253 1.10536 1.05310 1.20308 0.94169 0.78930 0.99210 1.21512 0.91778 0.95287 1.49146 0.94957 1.25735 0.96098 1.01477 0.94061 1.70040 1.12762 1.25389 1.49268 0.86196 0.80924 0.78591 0.80557 1.18423 1.21368 1.14315 1.21219 0.94584 1.01958 0.82374 1.19734 0.98411 1.05843 0.83079 1.29229 0.91712 0.91549 0.94685 1.81214 1.10301 1.11379 1.14030 1.25591 0.95438 0.97792 0.91683 1.77254 1.19760 1.02522 1.13847 1.49323 1.44628 1.13767 1.08159 1.22374 1.03883 1.03693 0.75618 0.91189 0.93070 0.85264 0.91749 0.92551 0.92221 0.88864 0.91091 0.86147 0.84133 0.76472 0.87885 0.87717 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.13 113.37 1.26 1.78 16 2 O -0.31 -8.91 10.01 -84.59 -0.85 -9.76 16 3 C 0.32 10.40 6.98 84.44 0.59 10.99 16 4 C -0.32 -12.24 5.87 -20.03 -0.12 -12.35 16 5 C 0.60 23.80 7.59 86.52 0.66 24.46 16 6 O -0.58 -24.98 16.19 -2.40 -0.04 -25.02 16 7 N -0.59 -21.34 2.47 -830.61 -2.05 -23.39 16 8 C 0.20 7.51 3.75 85.63 0.32 7.83 16 9 C -0.54 -26.68 8.10 25.60 0.21 -26.47 16 10 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 11 C 0.03 1.35 5.14 84.66 0.43 1.78 16 12 N -0.94 -53.52 13.96 21.45 0.30 -53.22 16 13 Si 0.92 36.58 26.88 68.60 1.84 38.42 16 14 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 15 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.22 -7.43 6.54 99.48 0.65 -6.78 16 17 C 0.12 3.70 5.36 86.38 0.46 4.17 16 18 C -0.03 -0.64 6.00 28.79 0.17 -0.47 16 19 C 0.25 6.30 15.43 89.44 1.38 7.68 16 20 N -0.49 -15.37 18.54 20.01 0.37 -15.00 16 21 C 0.08 3.20 9.50 85.71 0.81 4.01 16 22 N -0.31 -11.48 12.47 -56.23 -0.70 -12.18 16 23 N -0.37 -10.97 3.99 -479.79 -1.91 -12.89 16 24 C 0.08 1.40 11.38 127.77 1.45 2.86 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 2.17 7.12 -2.39 -0.02 2.16 16 29 H 0.06 2.12 3.93 -2.38 -0.01 2.11 16 30 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.09 2.76 8.04 -2.39 -0.02 2.74 16 32 H 0.07 2.34 7.47 -2.39 -0.02 2.32 16 33 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.22 9.55 2.79 -2.91 -0.01 9.54 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -73.15 332.35 5.65 -67.50 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.04 Total: 19.26 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 7.64 Total: 26.27 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -3.99 Total: -116.68 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.89 Total: -34.78 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 1.84 Total: 38.42 kcal Total: -73.15 5.65 -67.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464371712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.980 kcal (2) G-P(sol) polarization free energy of solvation -73.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds