Wall clock time and date at job start Tue Mar 31 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38752 * 120.05785 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94667 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05380 * 359.74030 * 5 4 3 7 7 C 1.38250 * 120.11377 * 0.51567 * 6 5 4 8 8 C 1.50701 * 119.97592 * 179.76534 * 7 6 5 9 9 H 1.08998 * 109.46740 * 179.72031 * 8 7 6 10 10 C 1.53001 * 109.47009 * 59.72079 * 8 7 6 11 11 S 1.81394 * 109.46836 * 299.72323 * 8 7 6 12 12 C 1.81406 * 102.99727 * 184.99834 * 11 8 7 13 13 C 1.52999 * 109.46898 * 179.97438 * 12 11 8 14 14 C 1.50696 * 115.56467 * 319.87915 * 13 12 11 15 15 H 1.08002 * 120.00271 * 96.14893 * 14 13 12 16 16 C 1.37877 * 120.00052 * 276.14374 * 14 13 12 17 17 N 1.31513 * 120.00060 * 8.07948 * 16 14 13 18 18 Si 1.86805 * 120.00124 * 188.07172 * 16 14 13 19 19 H 1.48498 * 109.46994 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46976 * 120.00019 * 18 16 14 21 21 H 1.48498 * 109.47164 * 240.00441 * 18 16 14 22 22 C 1.53007 * 117.49529 * 174.19107 * 13 12 11 23 23 C 1.53001 * 60.02818 * 252.49782 * 22 13 12 24 24 C 1.38173 * 120.05067 * 359.48325 * 7 6 5 25 25 H 1.09007 * 109.47320 * 59.99820 * 1 2 3 26 26 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47295 * 300.00183 * 1 2 3 28 28 H 1.08004 * 120.02859 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.97185 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.94919 * 180.27755 * 6 5 4 31 31 H 1.09001 * 109.47362 * 300.00359 * 10 8 7 32 32 H 1.09002 * 109.47176 * 60.00126 * 10 8 7 33 33 H 1.08999 * 109.47213 * 179.97438 * 10 8 7 34 34 H 1.09005 * 109.46674 * 60.00099 * 12 11 8 35 35 H 1.08996 * 109.47379 * 300.00122 * 12 11 8 36 36 H 0.96997 * 120.00238 * 174.98585 * 17 16 14 37 37 H 1.08998 * 117.49705 * 359.97438 * 22 13 12 38 38 H 1.09006 * 117.49543 * 145.00008 * 22 13 12 39 39 H 1.09001 * 117.49665 * 107.50252 * 23 22 13 40 40 H 1.09000 * 117.50273 * 252.51475 * 23 22 13 41 41 H 1.07996 * 120.02455 * 180.27761 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3017 3.6759 0.0065 7 6 4.0559 2.5173 0.0006 8 6 5.5607 2.5984 0.0012 9 1 5.9788 1.5917 0.0011 10 6 6.0307 3.3457 1.2509 11 16 6.1190 3.4852 -1.4794 12 6 7.9251 3.3477 -1.3806 13 6 8.5569 4.0576 -2.5797 14 6 7.8476 3.8675 -3.8957 15 1 7.1423 4.6088 -4.2411 16 6 8.0993 2.7471 -4.6589 17 7 8.8326 1.7704 -4.1712 18 14 7.3983 2.6163 -6.3855 19 1 6.6148 3.8391 -6.6955 20 1 8.5091 2.4801 -7.3616 21 1 6.5144 1.4263 -6.4721 22 6 10.0823 4.1723 -2.6094 23 6 9.2281 5.4100 -2.3277 24 6 3.4310 1.2849 0.0001 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2127 2.3204 0.0005 29 1 1.3337 4.5114 0.0019 30 1 3.7921 4.6382 0.0114 31 1 5.6125 4.3523 1.2510 32 1 5.6952 2.8128 2.1406 33 1 7.1191 3.4040 1.2516 34 1 8.2104 2.2957 -1.3899 35 1 8.2749 3.8109 -0.4581 36 1 8.9496 0.9519 -4.6785 37 1 10.6357 3.7424 -1.7745 38 1 10.5729 4.1098 -3.5809 39 1 9.2196 5.7940 -1.3076 40 1 9.1565 6.1617 -3.1137 41 1 4.0206 0.3801 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473003538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:29 Heat of formation + Delta-G solvation = 2.777728 kcal Electronic energy + Delta-G solvation = -20611.192990 eV Core-core repulsion = 17583.191690 eV Total energy + Delta-G solvation = -3028.001300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09640 -37.72490 -36.53473 -33.69900 -31.89644 -30.68076 -29.10047 -27.44997 -27.34785 -25.25874 -23.75571 -22.49379 -21.11545 -20.74991 -19.19902 -17.75499 -16.31424 -16.16366 -15.96586 -15.78599 -15.04978 -14.69816 -14.53360 -13.84055 -13.62595 -13.55182 -13.35845 -13.10355 -12.70468 -12.50279 -12.34994 -12.06332 -11.72818 -11.56093 -11.33414 -11.06643 -10.97541 -10.87857 -10.78845 -10.61276 -10.45094 -10.14929 -9.61104 -9.18960 -8.73965 -8.57117 -8.41205 -8.09862 -7.97519 -6.59561 -5.99526 -4.02554 1.31943 1.56260 2.60663 3.24283 3.33709 3.41975 3.46624 3.64517 3.93326 4.46730 4.75458 4.82047 4.99015 5.01783 5.12809 5.22102 5.30359 5.30952 5.33087 5.45310 5.48641 5.62755 5.69713 5.90645 5.99515 6.04487 6.10966 6.20130 6.30497 6.34966 6.47167 6.52281 6.55133 6.73557 6.75243 6.84604 6.86104 7.06302 7.39186 7.41739 7.48216 7.94019 8.42639 8.96217 9.61683 11.09292 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.016529 B = 0.004447 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.578328 B = 6295.526988 C = 7273.557663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.214 4.214 5 C -0.081 4.081 6 C -0.137 4.137 7 C -0.008 4.008 8 C -0.054 4.054 9 H 0.087 0.913 10 C -0.138 4.138 11 S -0.192 6.192 12 C -0.034 4.034 13 C 0.058 3.942 14 C -0.483 4.483 15 H 0.063 0.937 16 C 0.079 3.921 17 N -0.878 5.878 18 Si 0.887 3.113 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.155 4.155 23 C -0.208 4.208 24 C -0.141 4.141 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.259 0.741 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 -0.119 11.187 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.233 4.233 5 C -0.100 4.100 6 C -0.156 4.156 7 C -0.009 4.009 8 C -0.182 4.182 9 H 0.105 0.895 10 C -0.197 4.197 11 S 0.040 5.960 12 C -0.183 4.183 13 C 0.057 3.943 14 C -0.522 4.522 15 H 0.081 0.919 16 C -0.125 4.125 17 N -0.515 5.515 18 Si 0.715 3.285 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.194 4.194 23 C -0.245 4.245 24 C -0.161 4.161 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.065 0.026 10.341 16.662 hybrid contribution 0.233 -0.805 -0.060 0.840 sum -12.832 -0.779 10.281 16.461 Atomic orbital electron populations 1.23008 0.78758 1.03639 1.01209 1.86066 1.21081 1.27162 1.88985 1.18908 0.92122 0.84012 0.97103 1.21150 0.99632 0.92500 1.10048 1.20873 0.94493 0.96811 0.97783 1.20984 0.93439 0.98513 1.02671 1.19103 0.93494 0.92398 0.95925 1.22201 0.93716 1.03199 0.99130 0.89491 1.22063 1.01373 1.00529 0.95758 1.87304 1.08043 1.72482 1.28212 1.23026 0.91857 1.03800 0.99582 1.18467 0.90837 0.92006 0.92993 1.20318 1.24102 1.06858 1.00958 0.91900 1.24890 0.94221 0.95636 0.97706 1.69970 1.38698 1.04916 1.37866 0.86609 0.78754 0.78280 0.84906 1.19614 1.21130 1.20935 1.22588 0.95854 1.00558 1.00445 1.23066 1.09361 0.92750 0.99303 1.20274 0.91256 0.98143 1.06427 0.92717 0.88486 0.92871 0.85871 0.85877 0.85269 0.91505 0.92719 0.92178 0.90471 0.93553 0.93114 0.91943 0.89936 0.91646 0.90313 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.20 10.50 -19.44 -0.20 -4.40 16 3 C 0.12 1.75 6.69 -39.22 -0.26 1.49 16 4 C -0.21 -2.66 9.04 -39.43 -0.36 -3.02 16 5 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 6 C -0.14 -1.98 8.78 -39.56 -0.35 -2.32 16 7 C -0.01 -0.12 4.78 -104.64 -0.50 -0.62 16 8 C -0.05 -0.90 3.01 -27.88 -0.08 -0.98 16 9 H 0.09 1.47 7.87 -51.93 -0.41 1.06 16 10 C -0.14 -1.93 8.91 37.16 0.33 -1.60 16 11 S -0.19 -4.01 19.63 -107.50 -2.11 -6.12 16 12 C -0.03 -0.76 5.75 37.16 0.21 -0.54 16 13 C 0.06 1.42 1.62 -155.62 -0.25 1.17 16 14 C -0.48 -13.08 7.54 -34.44 -0.26 -13.34 16 15 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 16 C 0.08 2.17 5.39 -17.82 -0.10 2.07 16 17 N -0.88 -24.71 13.03 55.43 0.72 -23.98 16 18 Si 0.89 21.56 29.55 -169.99 -5.02 16.54 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.15 -3.58 9.58 -26.73 -0.26 -3.83 16 23 C -0.21 -4.49 9.88 -26.69 -0.26 -4.76 16 24 C -0.14 -2.17 9.61 -39.43 -0.38 -2.55 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.12 1.20 6.30 -52.48 -0.33 0.87 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.13 1.81 7.56 -52.48 -0.40 1.41 16 31 H 0.07 0.90 7.37 -51.93 -0.38 0.52 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.85 6.92 -51.93 -0.36 0.49 16 34 H 0.08 1.85 8.14 -51.92 -0.42 1.43 16 35 H 0.05 0.92 6.96 -51.93 -0.36 0.55 16 36 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 39 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 40 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 41 H 0.13 1.92 7.94 -52.49 -0.42 1.50 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -29.49 351.84 -9.61 -39.10 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.38 Total: 2.61 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -1.92 Total: -29.04 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.72 Total: -23.98 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.20 Total: -4.40 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.11 Total: -6.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.49 -9.61 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473003538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.873 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds