Wall clock time and date at job start Tue Mar 31 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38752 * 120.05785 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94667 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05380 * 359.74030 * 5 4 3 7 7 C 1.38250 * 120.11377 * 0.51567 * 6 5 4 8 8 C 1.50701 * 119.97592 * 179.76534 * 7 6 5 9 9 H 1.08998 * 109.46740 * 179.72031 * 8 7 6 10 10 C 1.53001 * 109.47009 * 59.72079 * 8 7 6 11 11 S 1.81394 * 109.46836 * 299.72323 * 8 7 6 12 12 C 1.81406 * 102.99727 * 184.99834 * 11 8 7 13 13 C 1.52999 * 109.46898 * 179.97438 * 12 11 8 14 14 C 1.50696 * 115.56467 * 319.87915 * 13 12 11 15 15 H 1.08002 * 120.00271 * 96.14893 * 14 13 12 16 16 C 1.37877 * 120.00052 * 276.14374 * 14 13 12 17 17 N 1.31513 * 120.00060 * 8.07948 * 16 14 13 18 18 Si 1.86805 * 120.00124 * 188.07172 * 16 14 13 19 19 H 1.48498 * 109.46994 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46976 * 120.00019 * 18 16 14 21 21 H 1.48498 * 109.47164 * 240.00441 * 18 16 14 22 22 C 1.53007 * 117.49529 * 174.19107 * 13 12 11 23 23 C 1.53001 * 60.02818 * 252.49782 * 22 13 12 24 24 C 1.38173 * 120.05067 * 359.48325 * 7 6 5 25 25 H 1.09007 * 109.47320 * 59.99820 * 1 2 3 26 26 H 1.08998 * 109.47015 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47295 * 300.00183 * 1 2 3 28 28 H 1.08004 * 120.02859 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.97185 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.94919 * 180.27755 * 6 5 4 31 31 H 1.09001 * 109.47362 * 300.00359 * 10 8 7 32 32 H 1.09002 * 109.47176 * 60.00126 * 10 8 7 33 33 H 1.08999 * 109.47213 * 179.97438 * 10 8 7 34 34 H 1.09005 * 109.46674 * 60.00099 * 12 11 8 35 35 H 1.08996 * 109.47379 * 300.00122 * 12 11 8 36 36 H 0.96997 * 120.00238 * 174.98585 * 17 16 14 37 37 H 1.08998 * 117.49705 * 359.97438 * 22 13 12 38 38 H 1.09006 * 117.49543 * 145.00008 * 22 13 12 39 39 H 1.09001 * 117.49665 * 107.50252 * 23 22 13 40 40 H 1.09000 * 117.50273 * 252.51475 * 23 22 13 41 41 H 1.07996 * 120.02455 * 180.27761 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3017 3.6759 0.0065 7 6 4.0559 2.5173 0.0006 8 6 5.5607 2.5984 0.0012 9 1 5.9788 1.5917 0.0011 10 6 6.0307 3.3457 1.2509 11 16 6.1190 3.4852 -1.4794 12 6 7.9251 3.3477 -1.3806 13 6 8.5569 4.0576 -2.5797 14 6 7.8476 3.8675 -3.8957 15 1 7.1423 4.6088 -4.2411 16 6 8.0993 2.7471 -4.6589 17 7 8.8326 1.7704 -4.1712 18 14 7.3983 2.6163 -6.3855 19 1 6.6148 3.8391 -6.6955 20 1 8.5091 2.4801 -7.3616 21 1 6.5144 1.4263 -6.4721 22 6 10.0823 4.1723 -2.6094 23 6 9.2281 5.4100 -2.3277 24 6 3.4310 1.2849 0.0001 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2127 2.3204 0.0005 29 1 1.3337 4.5114 0.0019 30 1 3.7921 4.6382 0.0114 31 1 5.6125 4.3523 1.2510 32 1 5.6952 2.8128 2.1406 33 1 7.1191 3.4040 1.2516 34 1 8.2104 2.2957 -1.3899 35 1 8.2749 3.8109 -0.4581 36 1 8.9496 0.9519 -4.6785 37 1 10.6357 3.7424 -1.7745 38 1 10.5729 4.1098 -3.5809 39 1 9.2196 5.7940 -1.3076 40 1 9.1565 6.1617 -3.1137 41 1 4.0206 0.3801 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473003538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:29 Heat of formation + Delta-G solvation = -10.794202 kcal Electronic energy + Delta-G solvation = -20611.781513 eV Core-core repulsion = 17583.191690 eV Total energy + Delta-G solvation = -3028.589823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09461 -38.74179 -38.37988 -34.84392 -33.96343 -31.70075 -30.25965 -29.12583 -28.12961 -27.31245 -24.89219 -23.54239 -22.91273 -21.89961 -21.03364 -18.85525 -18.04506 -17.36254 -17.03438 -16.67652 -16.62419 -16.42401 -15.82655 -15.52732 -15.20877 -14.67254 -14.57781 -14.41350 -14.18998 -13.87557 -13.55392 -13.23909 -13.07585 -12.95137 -12.83798 -12.75350 -12.43955 -12.37710 -12.19492 -11.98551 -11.90289 -11.71885 -11.46522 -10.82277 -10.52461 -10.44252 -9.82915 -9.73408 -9.13185 -8.25568 -8.07320 -6.14361 0.18083 0.49774 1.16767 1.38453 1.41946 1.51559 2.05556 2.37331 2.45129 2.84926 3.22233 3.49402 3.64848 3.86046 4.02538 4.15681 4.23739 4.26619 4.35097 4.41066 4.42057 4.42867 4.56575 4.63955 4.67863 4.68943 4.73542 4.84390 4.90432 4.98759 5.02757 5.04546 5.19256 5.23754 5.31981 5.49777 5.59450 5.63165 5.66125 5.81034 5.81495 6.41080 6.47156 6.86405 7.51251 9.00438 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.016529 B = 0.004447 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.578328 B = 6295.526988 C = 7273.557663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.117 3.883 4 C -0.208 4.208 5 C -0.077 4.077 6 C -0.148 4.148 7 C -0.025 4.025 8 C -0.036 4.036 9 H 0.075 0.925 10 C -0.132 4.132 11 S -0.237 6.237 12 C -0.020 4.020 13 C 0.028 3.972 14 C -0.488 4.488 15 H 0.047 0.953 16 C 0.037 3.963 17 N -0.904 5.904 18 Si 0.936 3.064 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.285 1.285 22 C -0.158 4.158 23 C -0.183 4.183 24 C -0.164 4.164 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.070 0.930 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.258 0.742 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.685 0.725 12.322 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.071 3.929 4 C -0.227 4.227 5 C -0.095 4.095 6 C -0.167 4.167 7 C -0.027 4.027 8 C -0.164 4.164 9 H 0.094 0.906 10 C -0.190 4.190 11 S -0.005 6.005 12 C -0.168 4.168 13 C 0.026 3.974 14 C -0.527 4.527 15 H 0.065 0.935 16 C -0.164 4.164 17 N -0.542 5.542 18 Si 0.763 3.237 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.211 1.211 22 C -0.197 4.197 23 C -0.220 4.220 24 C -0.185 4.185 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.088 0.912 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.149 0.851 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.070 0.882 11.465 18.956 hybrid contribution 0.707 -1.103 -0.350 1.356 sum -14.363 -0.221 11.115 18.163 Atomic orbital electron populations 1.23351 0.76315 1.05520 1.02393 1.86044 1.23656 1.26904 1.88818 1.19035 0.91879 0.85132 0.96819 1.21514 1.01194 0.91655 1.08308 1.21250 0.93910 0.98213 0.96156 1.21112 0.94494 0.97993 1.03132 1.19073 0.92791 0.93161 0.97633 1.22146 0.94618 1.02006 0.97643 0.90626 1.22010 1.01178 1.00824 0.95024 1.87260 1.07539 1.73273 1.32447 1.22784 0.92556 1.01834 0.99662 1.18595 0.91347 0.94555 0.92867 1.20445 1.23693 1.06224 1.02312 0.93530 1.25456 0.94862 0.95602 1.00439 1.70054 1.40061 1.05231 1.38852 0.85840 0.78208 0.77966 0.81726 1.19448 1.20583 1.21108 1.22507 0.95301 1.02017 0.99916 1.23072 1.06521 0.91559 1.00837 1.20343 0.92393 0.97842 1.07873 0.91864 0.86498 0.91185 0.82729 0.82742 0.85144 0.90731 0.90727 0.92409 0.93311 0.91241 0.93307 0.90530 0.92135 0.88782 0.90439 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.48 10.50 -92.47 -0.97 -9.45 16 3 C 0.12 3.15 6.69 22.51 0.15 3.30 16 4 C -0.21 -4.58 9.04 22.37 0.20 -4.38 16 5 C -0.08 -1.74 10.04 22.25 0.22 -1.51 16 6 C -0.15 -4.06 8.78 22.28 0.20 -3.86 16 7 C -0.03 -0.78 4.78 -19.88 -0.09 -0.88 16 8 C -0.04 -1.19 3.01 29.85 0.09 -1.10 16 9 H 0.08 2.63 7.87 -2.39 -0.02 2.61 16 10 C -0.13 -3.52 8.91 71.98 0.64 -2.87 16 11 S -0.24 -9.97 19.63 -56.49 -1.11 -11.07 16 12 C -0.02 -0.88 5.75 71.98 0.41 -0.47 16 13 C 0.03 1.35 1.62 -52.90 -0.09 1.26 16 14 C -0.49 -26.80 7.54 25.60 0.19 -26.61 16 15 H 0.05 2.65 7.83 -2.91 -0.02 2.63 16 16 C 0.04 2.06 5.39 84.65 0.46 2.52 16 17 N -0.90 -52.01 13.03 21.45 0.28 -51.73 16 18 Si 0.94 44.89 29.55 68.60 2.03 46.91 16 19 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 22 C -0.16 -7.27 9.58 30.60 0.29 -6.98 16 23 C -0.18 -7.67 9.88 30.62 0.30 -7.37 16 24 C -0.16 -5.07 9.61 22.37 0.21 -4.85 16 25 H 0.06 0.80 7.66 -2.38 -0.02 0.78 16 26 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 28 H 0.16 2.36 6.30 -2.91 -0.02 2.34 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.13 3.48 7.56 -2.91 -0.02 3.46 16 31 H 0.07 1.88 7.37 -2.39 -0.02 1.86 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.56 6.92 -2.39 -0.02 1.54 16 34 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.07 2.69 6.96 -2.39 -0.02 2.67 16 36 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 37 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 39 H 0.09 3.40 8.09 -2.39 -0.02 3.38 16 40 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.12 3.75 7.94 -2.91 -0.02 3.73 16 Total: -1.00 -64.28 351.84 5.53 -58.74 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.00 Total: 19.02 kcal Atomic # 6 Polarization: -56.74 SS G_CDS: 4.31 Total: -52.43 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.28 Total: -51.73 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.97 Total: -9.45 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -9.97 SS G_CDS: -1.11 Total: -11.07 kcal Total: -64.28 5.53 -58.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473003538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.950 kcal (2) G-P(sol) polarization free energy of solvation -64.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds