Wall clock time and date at job start Tue Mar 31 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30296 * 126.34971 * 2 1 4 4 N 1.28533 * 110.05318 * 179.76241 * 3 2 1 5 5 C 1.31220 * 109.85991 * 0.45225 * 4 3 2 6 6 N 1.38571 * 126.47130 * 179.82090 * 5 4 3 7 7 C 1.46903 * 111.00053 * 305.78468 * 6 5 4 8 8 C 1.46896 * 111.00132 * 69.73510 * 6 5 4 9 9 H 1.09004 * 109.47145 * 55.00362 * 8 6 5 10 10 C 1.52990 * 109.47621 * 295.00163 * 8 6 5 11 11 C 1.50698 * 109.47291 * 174.99935 * 8 6 5 12 12 H 1.07995 * 119.99983 * 0.02562 * 11 8 6 13 13 C 1.37879 * 120.00282 * 180.02562 * 11 8 6 14 14 N 1.31512 * 119.99629 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00197 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47104 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47325 * 119.99316 * 15 13 11 18 18 H 1.48499 * 109.46946 * 239.99496 * 15 13 11 19 19 N 1.36454 * 107.05701 * 359.56269 * 5 4 3 20 20 C 1.46498 * 127.13974 * 180.28509 * 19 5 4 21 21 C 1.52997 * 109.47458 * 94.79115 * 20 19 5 22 22 F 1.39907 * 109.47010 * 60.00084 * 21 20 19 23 23 F 1.39894 * 109.47320 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47090 * 300.00249 * 21 20 19 25 25 H 1.08995 * 109.46764 * 269.95604 * 1 2 3 26 26 H 1.08997 * 109.46894 * 29.95380 * 1 2 3 27 27 H 1.09003 * 109.46917 * 149.95850 * 1 2 3 28 28 H 1.08994 * 109.47249 * 54.49066 * 7 6 5 29 29 H 1.08999 * 109.47197 * 174.49200 * 7 6 5 30 30 H 1.09006 * 109.47135 * 294.49077 * 7 6 5 31 31 H 1.08998 * 109.47924 * 179.97438 * 10 8 6 32 32 H 1.09004 * 109.47024 * 300.00273 * 10 8 6 33 33 H 1.09010 * 109.47144 * 59.99723 * 10 8 6 34 34 H 0.96999 * 119.99900 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.46690 * 214.79186 * 20 19 5 36 36 H 1.08993 * 109.46695 * 334.78987 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5130 0.6888 0.0050 5 6 3.5946 -0.6209 -0.0012 6 7 4.7580 -1.3737 -0.0021 7 6 5.6383 -0.9810 -1.1106 8 6 5.4549 -1.2673 1.2866 9 1 4.7748 -1.5460 2.0916 10 6 5.9270 0.1731 1.4938 11 6 6.6450 -2.1916 1.2920 12 1 6.8623 -2.7973 0.4246 13 6 7.4567 -2.2642 2.4042 14 7 7.1924 -1.5263 3.4603 15 14 8.9323 -3.4095 2.4106 16 1 9.0100 -4.1239 1.1111 17 1 10.1722 -2.6183 2.6157 18 1 8.7877 -4.3970 3.5101 19 7 2.3175 -1.1015 -0.0008 20 6 1.9010 -2.5060 -0.0007 21 6 1.6409 -2.9608 1.4368 22 9 0.6294 -2.1744 1.9989 23 9 1.2426 -4.3018 1.4368 24 9 2.8121 -2.8216 2.1890 25 1 -0.3633 -0.0008 1.0276 26 1 -0.3633 0.8904 -0.5131 27 1 -0.3633 -0.8896 -0.5145 28 1 5.8241 0.0920 -1.0644 29 1 6.5840 -1.5172 -1.0311 30 1 5.1601 -1.2265 -2.0589 31 1 6.4437 0.2523 2.4502 32 1 6.6071 0.4519 0.6888 33 1 5.0661 0.8418 1.4899 34 1 7.7635 -1.5771 4.2426 35 1 0.9883 -2.6143 -0.5868 36 1 2.6889 -3.1186 -0.4386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492775720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:46 Heat of formation + Delta-G solvation = -54.317502 kcal Electronic energy + Delta-G solvation = -25378.915339 eV Core-core repulsion = 21292.581000 eV Total energy + Delta-G solvation = -4086.334339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.08252 -47.67289 -47.45635 -42.68572 -37.31552 -35.31364 -32.98250 -31.59203 -29.54158 -28.73708 -27.19161 -25.35294 -25.13808 -23.90842 -21.64098 -20.79846 -19.75698 -18.57486 -18.43564 -17.87145 -16.65583 -16.10782 -15.84250 -15.21244 -14.69805 -14.63538 -14.40601 -14.19994 -14.01063 -13.77863 -13.66912 -13.59321 -13.19758 -13.02548 -12.78370 -12.66364 -12.31697 -12.28818 -11.56349 -11.35822 -11.25661 -10.95803 -10.80336 -10.61469 -10.29113 -10.15637 -10.09084 -9.94134 -8.91520 -8.58352 -8.45458 -7.81295 -6.07912 -4.14256 1.78866 2.22430 2.74601 3.17649 3.26416 3.34424 3.37339 3.66610 3.84339 4.04784 4.31771 4.47327 4.53332 4.61644 4.84340 5.06038 5.24628 5.41300 5.60372 5.69865 5.86672 5.98292 6.25897 6.30528 6.56956 6.76483 6.85924 7.02997 7.13708 7.44202 7.60038 7.71573 7.90297 8.22863 8.40154 8.88470 9.06815 9.50346 10.98951 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.006570 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.223791 B = 4260.524796 C = 5130.341596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.166 3.834 3 N -0.287 5.287 4 N -0.306 5.306 5 C 0.388 3.612 6 N -0.472 5.472 7 C 0.044 3.956 8 C 0.222 3.778 9 H 0.046 0.954 10 C -0.174 4.174 11 C -0.508 4.508 12 H 0.066 0.934 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.482 5.482 20 C 0.077 3.923 21 C 0.438 3.562 22 F -0.183 7.183 23 F -0.177 7.177 24 F -0.154 7.154 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.131 0.869 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.450 -3.234 -7.506 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.101 4.101 3 N -0.126 5.126 4 N -0.147 5.147 5 C 0.033 3.967 6 N -0.199 5.199 7 C -0.104 4.104 8 C 0.118 3.882 9 H 0.064 0.936 10 C -0.233 4.233 11 C -0.546 4.546 12 H 0.084 0.916 13 C -0.140 4.140 14 N -0.525 5.525 15 Si 0.728 3.272 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.178 5.178 20 C -0.050 4.050 21 C 0.382 3.618 22 F -0.164 7.164 23 F -0.159 7.159 24 F -0.135 7.135 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.149 0.851 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.054 -2.216 -7.350 15.144 hybrid contribution 0.620 -1.394 0.567 1.628 sum -12.434 -3.610 -6.783 14.617 Atomic orbital electron populations 1.20184 0.83862 1.03924 1.04043 1.24776 0.96434 0.82422 1.06437 1.74008 0.97090 1.23894 1.17595 1.74831 1.10848 1.08392 1.20676 1.23048 0.85961 0.88407 0.99296 1.59479 1.02261 1.49037 1.09120 1.22280 0.97263 1.00394 0.90452 1.19498 0.92994 0.93910 0.81786 0.93643 1.22457 0.99982 0.97501 1.03378 1.21010 1.09372 1.23249 1.01018 0.91556 1.24906 0.97875 0.95852 0.95335 1.69918 1.38676 1.39408 1.04503 0.86410 0.82239 0.80485 0.78083 1.19660 1.21006 1.21027 1.46080 1.07471 1.06105 1.58176 1.22815 1.06884 0.82780 0.92504 1.20795 0.75159 0.75299 0.90557 1.93190 1.61365 1.74413 1.87453 1.93199 1.90968 1.34783 1.96950 1.93389 1.46645 1.95160 1.78306 0.89568 0.88771 0.90924 0.93980 0.88851 0.93675 0.89452 0.94925 0.94906 0.92821 0.85128 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 9.59 36.01 0.35 -0.26 16 2 C 0.17 2.59 7.74 -154.00 -1.19 1.39 16 3 N -0.29 -5.60 12.18 32.99 0.40 -5.20 16 4 N -0.31 -6.62 9.69 30.31 0.29 -6.33 16 5 C 0.39 7.78 6.22 -318.88 -1.98 5.79 16 6 N -0.47 -9.93 4.75 -176.09 -0.84 -10.77 16 7 C 0.04 0.83 8.66 60.07 0.52 1.35 16 8 C 0.22 5.54 2.31 -68.87 -0.16 5.38 16 9 H 0.05 1.27 6.74 -51.93 -0.35 0.92 16 10 C -0.17 -4.43 8.20 37.15 0.30 -4.12 16 11 C -0.51 -13.31 7.81 -34.44 -0.27 -13.57 16 12 H 0.07 1.69 6.81 -52.49 -0.36 1.33 16 13 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 14 N -0.89 -25.07 11.32 55.43 0.63 -24.45 16 15 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 N -0.48 -7.74 2.69 -114.09 -0.31 -8.05 16 20 C 0.08 0.92 5.96 -4.04 -0.02 0.89 16 21 C 0.44 6.09 3.29 37.16 0.12 6.22 16 22 F -0.18 -2.50 15.96 2.25 0.04 -2.46 16 23 F -0.18 -2.24 17.32 2.25 0.04 -2.20 16 24 F -0.15 -2.93 15.90 2.25 0.04 -2.89 16 25 H 0.09 0.83 7.85 -51.93 -0.41 0.42 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.51 7.38 -51.93 -0.38 0.13 16 28 H 0.04 0.84 6.56 -51.93 -0.34 0.50 16 29 H 0.09 1.82 6.29 -51.93 -0.33 1.50 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 32 H 0.03 0.79 6.60 -51.93 -0.34 0.45 16 33 H 0.03 0.83 5.92 -51.92 -0.31 0.52 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.13 0.94 7.40 -51.93 -0.38 0.56 16 36 H 0.15 1.70 8.12 -51.93 -0.42 1.28 16 LS Contribution 306.07 15.07 4.61 4.61 Total: -1.00 -31.78 306.07 -6.46 -38.24 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.92 Total: -0.90 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -2.43 Total: 4.66 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.18 Total: -54.79 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.11 Total: -7.56 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.78 -6.46 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492775720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.073 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds