Wall clock time and date at job start Tue Mar 31 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31800 * 119.08658 * 2 1 4 4 C 1.32499 * 120.99379 * 179.97438 * 3 2 1 5 5 C 1.38204 * 119.18632 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.83131 * 179.97438 * 5 4 3 7 7 C 1.39503 * 118.33585 * 359.97438 * 5 4 3 8 8 N 1.39015 * 120.52457 * 180.02562 * 7 5 4 9 9 C 1.34773 * 120.00040 * 179.97438 * 8 7 5 10 10 O 1.21574 * 120.00315 * 359.73078 * 9 8 7 11 11 N 1.34784 * 119.99935 * 180.02562 * 9 8 7 12 12 C 1.47066 * 136.05424 * 359.35414 * 11 9 8 13 13 C 1.53762 * 87.88585 * 152.96483 * 12 11 9 14 14 O 1.42904 * 114.39195 * 272.67989 * 13 12 11 15 15 C 1.50690 * 114.26622 * 139.79509 * 13 12 11 16 16 H 1.08004 * 119.99835 * 266.47153 * 15 13 12 17 17 C 1.37872 * 120.00510 * 86.47557 * 15 13 12 18 18 N 1.31516 * 119.99887 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00382 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47342 * 89.99795 * 19 17 15 21 21 H 1.48508 * 109.47137 * 210.00064 * 19 17 15 22 22 H 1.48498 * 109.46904 * 329.99849 * 19 17 15 23 23 C 1.47060 * 136.05955 * 179.72615 * 11 9 8 24 24 N 1.31747 * 119.08896 * 180.25884 * 2 1 3 25 25 H 1.09001 * 109.47118 * 89.99252 * 1 2 3 26 26 H 1.08998 * 109.47098 * 209.99983 * 1 2 3 27 27 H 1.08996 * 109.47281 * 330.00005 * 1 2 3 28 28 H 1.08006 * 120.41138 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47654 * 270.01914 * 6 5 4 30 30 H 1.08997 * 109.47354 * 30.02838 * 6 5 4 31 31 H 1.09006 * 109.46867 * 150.02203 * 6 5 4 32 32 H 0.97004 * 119.99942 * 0.02562 * 8 7 5 33 33 H 1.08995 * 113.47095 * 267.69602 * 12 11 9 34 34 H 1.09002 * 113.46562 * 38.14198 * 12 11 9 35 35 H 0.96703 * 113.99465 * 273.58307 * 14 13 12 36 36 H 0.96999 * 119.99866 * 180.02562 * 18 17 15 37 37 H 1.08999 * 113.46648 * 321.86761 * 23 11 9 38 38 H 1.08999 * 113.46926 * 92.30593 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1477 1.1518 0.0000 4 6 3.4719 1.1959 0.0005 5 6 4.1857 0.0124 0.0005 6 6 5.6926 0.0193 0.0005 7 6 3.4762 -1.1887 0.0005 8 7 4.1481 -2.4057 0.0010 9 6 3.4521 -3.5598 0.0016 10 8 2.2366 -3.5366 0.0065 11 7 4.1036 -4.7397 0.0026 12 6 5.5088 -5.1733 -0.0081 13 6 5.0577 -6.4601 0.7026 14 8 5.0123 -6.3624 2.1275 15 6 5.7416 -7.7104 0.2127 16 1 5.2850 -8.3069 -0.5634 17 6 6.9500 -8.0930 0.7552 18 7 7.5056 -7.3671 1.7006 19 14 7.7973 -9.6433 0.1484 20 1 8.6954 -9.3054 -0.9849 21 1 8.5946 -10.2361 1.2522 22 1 6.7754 -10.6210 -0.3045 23 6 3.7221 -6.1599 0.0083 24 7 2.1475 -1.1513 -0.0052 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 3.9874 2.1450 0.0001 29 1 6.0561 0.0213 -1.0272 30 1 6.0519 0.9106 0.5147 31 1 6.0600 -0.8693 0.5140 32 1 5.1180 -2.4242 0.0018 33 1 5.9023 -5.3459 -1.0098 34 1 6.1612 -4.5462 0.5994 35 1 5.8553 -6.5521 2.5618 36 1 8.3560 -7.6360 2.0820 37 1 2.8523 -6.3733 0.6296 38 1 3.6446 -6.5926 -0.9891 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001562884877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:52 Heat of formation + Delta-G solvation = 2.671870 kcal Electronic energy + Delta-G solvation = -23219.110737 eV Core-core repulsion = 19677.104383 eV Total energy + Delta-G solvation = -3542.006354 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.47851 -41.32781 -39.55361 -36.78373 -35.93256 -35.04013 -34.12820 -33.32841 -31.11758 -30.30964 -27.42394 -26.88028 -26.69979 -25.23924 -22.99737 -22.38783 -20.93007 -19.68736 -19.10131 -18.69602 -17.92112 -17.15221 -17.05865 -16.53987 -16.17168 -15.93540 -15.64928 -15.30217 -15.10110 -14.57514 -14.42429 -14.28582 -14.14154 -13.83607 -13.41208 -13.31478 -13.26078 -13.17755 -12.80959 -12.74538 -12.57303 -12.24009 -12.19004 -11.91300 -11.58914 -11.15698 -10.96022 -10.69842 -10.29875 -10.03049 -9.78834 -9.44036 -8.28042 -6.44781 -0.14263 0.15023 1.13906 1.47843 1.52445 1.61065 1.99214 2.39260 2.52377 2.79885 2.94734 3.08318 3.26868 3.55543 3.69650 3.91813 4.04700 4.10703 4.33177 4.44321 4.57370 4.62195 4.68302 4.70965 4.75835 4.81576 4.85811 4.88596 4.95295 5.13522 5.16741 5.21276 5.56902 5.64025 5.72951 5.90125 6.20805 6.61509 6.86436 7.15839 7.28576 7.41836 7.48430 8.78267 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030612 B = 0.003594 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.444063 B = 7789.132368 C = 8369.624900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.317 3.683 3 N -0.551 5.551 4 C 0.171 3.829 5 C -0.230 4.230 6 C -0.100 4.100 7 C 0.397 3.603 8 N -0.649 5.649 9 C 0.714 3.286 10 O -0.579 6.579 11 N -0.654 5.654 12 C 0.084 3.916 13 C 0.222 3.778 14 O -0.586 6.586 15 C -0.551 4.551 16 H 0.076 0.924 17 C 0.034 3.966 18 N -0.917 5.917 19 Si 0.971 3.029 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.271 1.271 23 C 0.130 3.870 24 N -0.550 5.550 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.215 0.785 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.427 0.573 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.390 0.610 36 H 0.277 0.723 37 H 0.053 0.947 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 14.621 -4.447 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 N -0.268 5.268 4 C 0.006 3.994 5 C -0.238 4.238 6 C -0.158 4.158 7 C 0.157 3.843 8 N -0.299 5.299 9 C 0.417 3.583 10 O -0.455 6.455 11 N -0.392 5.392 12 C -0.038 4.038 13 C 0.180 3.820 14 O -0.399 6.399 15 C -0.589 4.589 16 H 0.094 0.906 17 C -0.166 4.166 18 N -0.557 5.557 19 Si 0.796 3.204 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.196 1.196 23 C 0.007 3.993 24 N -0.272 5.272 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.231 0.769 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.267 0.733 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.245 0.755 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.350 14.851 -4.435 15.676 hybrid contribution 2.289 -1.228 0.044 2.599 sum -0.061 13.622 -4.391 14.313 Atomic orbital electron populations 1.20585 0.84175 1.04320 1.04525 1.23689 0.99349 0.82332 0.89695 1.68318 1.11045 1.29371 1.18073 1.23634 0.88684 0.98715 0.88318 1.21416 1.00608 0.91859 1.09929 1.20693 0.86352 1.04593 1.04117 1.18690 0.88986 0.85526 0.91114 1.42552 1.10770 1.02138 1.74478 1.15560 0.84649 0.79665 0.78448 1.90956 1.12183 1.85463 1.56911 1.48886 1.11329 1.03972 1.75032 1.24117 0.81342 0.96776 1.01611 1.19824 0.90828 0.91870 0.79480 1.86052 1.40976 1.93047 1.19836 1.21640 1.05529 1.09527 1.22253 0.90600 1.25741 0.97003 0.99634 0.94252 1.69316 1.19333 1.39949 1.27137 0.85354 0.78203 0.78924 0.77946 1.19544 1.21024 1.19572 1.23274 0.99036 0.76339 1.00648 1.68254 1.08356 1.31639 1.18918 0.88689 0.90775 0.87714 0.76891 0.89103 0.87553 0.92092 0.73305 0.88469 0.91675 0.75451 0.91317 0.92890 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.87 10.32 71.24 0.73 -1.14 16 2 C 0.32 9.83 7.64 138.76 1.06 10.89 16 3 N -0.55 -14.58 10.33 -188.07 -1.94 -16.53 16 4 C 0.17 3.53 11.00 84.58 0.93 4.46 16 5 C -0.23 -5.30 5.93 -19.57 -0.12 -5.42 16 6 C -0.10 -1.44 9.65 71.24 0.69 -0.75 16 7 C 0.40 13.15 7.44 132.99 0.99 14.14 16 8 N -0.65 -22.21 5.31 -321.76 -1.71 -23.92 16 9 C 0.71 30.72 8.76 179.05 1.57 32.29 16 10 O -0.58 -29.05 15.41 -3.95 -0.06 -29.11 16 11 N -0.65 -27.51 3.69 -876.52 -3.23 -30.74 16 12 C 0.08 3.38 7.72 83.26 0.64 4.02 16 13 C 0.22 10.33 1.58 -11.12 -0.02 10.31 16 14 O -0.59 -30.18 13.55 -148.98 -2.02 -32.20 16 15 C -0.55 -26.44 8.70 25.60 0.22 -26.22 16 16 H 0.08 3.52 7.81 -2.91 -0.02 3.49 16 17 C 0.03 1.62 5.39 84.65 0.46 2.08 16 18 N -0.92 -44.44 11.01 21.45 0.24 -44.20 16 19 Si 0.97 37.87 29.54 68.60 2.03 39.89 16 20 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 C 0.13 5.63 8.02 83.17 0.67 6.30 16 24 N -0.55 -20.72 7.93 -185.21 -1.47 -22.19 16 25 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.21 2.26 8.06 -2.91 -0.02 2.24 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 0.94 8.10 -2.39 -0.02 0.92 16 31 H 0.06 0.96 6.67 -2.38 -0.02 0.94 16 32 H 0.43 11.87 6.55 -92.71 -0.61 11.27 16 33 H 0.10 3.58 8.10 -2.39 -0.02 3.56 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.39 20.20 6.32 -74.06 -0.47 19.73 16 36 H 0.28 12.71 8.31 -92.71 -0.77 11.94 16 37 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.11 4.07 8.10 -2.39 -0.02 4.05 16 Total: -1.00 -67.44 327.11 -0.30 -67.74 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: 0.04 Total: 40.29 kcal Atomic # 6 Polarization: 43.13 SS G_CDS: 7.83 Total: 50.96 kcal Atomic # 7 Polarization: -129.47 SS G_CDS: -8.12 Total: -137.58 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -2.08 Total: -61.30 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.89 kcal Total: -67.44 -0.30 -67.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562884877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.413 kcal (2) G-P(sol) polarization free energy of solvation -67.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds