Wall clock time and date at job start Tue Mar 31 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38828 * 120.37286 * 2 1 4 4 C 1.39498 * 118.41437 * 180.02562 * 3 2 1 5 5 C 1.48387 * 120.50832 * 180.02562 * 4 3 2 6 6 O 1.21389 * 119.99537 * 359.97438 * 5 4 3 7 7 O 1.34641 * 120.00299 * 179.97438 * 5 4 3 8 8 N 1.33100 * 118.98610 * 359.74958 * 4 3 2 9 9 C 1.32247 * 120.65470 * 0.50591 * 8 4 3 10 10 N 1.38430 * 119.13670 * 179.76029 * 9 8 4 11 11 C 1.46897 * 110.99808 * 359.72907 * 10 9 8 12 12 C 1.53247 * 109.33862 * 187.25245 * 11 10 9 13 13 N 1.47074 * 108.51990 * 306.16776 * 12 11 10 14 14 C 1.36942 * 120.88247 * 231.18498 * 13 12 11 15 15 H 1.08002 * 119.99420 * 27.10940 * 14 13 12 16 16 C 1.38813 * 120.00143 * 207.11011 * 14 13 12 17 17 N 1.31617 * 119.99715 * 16.76771 * 16 14 13 18 18 Si 1.86795 * 119.99947 * 196.77399 * 16 14 13 19 19 H 1.48494 * 109.47132 * 179.97438 * 18 16 14 20 20 H 1.48507 * 109.47079 * 299.99798 * 18 16 14 21 21 H 1.48501 * 109.47054 * 59.99515 * 18 16 14 22 22 C 1.47078 * 118.23813 * 51.45896 * 13 12 11 23 23 C 1.46903 * 111.00108 * 124.02921 * 10 9 8 24 24 N 1.32095 * 120.37846 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47342 * 269.98081 * 1 2 3 26 26 H 1.09000 * 109.47113 * 29.98132 * 1 2 3 27 27 H 1.09000 * 109.46789 * 149.97909 * 1 2 3 28 28 H 1.07995 * 120.79297 * 359.97438 * 3 2 1 29 29 H 0.96695 * 117.00163 * 179.97438 * 7 5 4 30 30 H 1.09004 * 109.49264 * 67.29365 * 11 10 9 31 31 H 1.09003 * 109.51682 * 307.22461 * 11 10 9 32 32 H 1.09000 * 109.62236 * 186.45985 * 12 11 10 33 33 H 1.08996 * 109.62383 * 65.88170 * 12 11 10 34 34 H 0.97002 * 119.99529 * 179.97438 * 17 16 14 35 35 H 1.09003 * 109.62879 * 68.24716 * 22 13 12 36 36 H 1.09001 * 109.63018 * 188.82828 * 22 13 12 37 37 H 1.09007 * 109.49038 * 292.70884 * 23 10 9 38 38 H 1.09004 * 109.49330 * 52.75986 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2090 1.1977 0.0000 4 6 3.6032 1.1501 -0.0005 5 6 4.3997 2.4020 0.0000 6 8 3.8385 3.4784 0.0005 7 8 5.7449 2.3441 0.0000 8 7 4.2080 -0.0356 0.0040 9 6 3.5011 -1.1532 -0.0010 10 7 4.1626 -2.3692 -0.0011 11 6 5.6188 -2.1762 -0.0016 12 6 6.3103 -3.5316 -0.1842 13 7 5.8058 -4.4555 0.8429 14 6 6.6687 -5.1643 1.6356 15 1 7.6543 -4.7749 1.8436 16 6 6.2765 -6.3832 2.1717 17 7 5.2355 -7.0166 1.6740 18 14 7.2259 -7.1245 3.5994 19 1 6.6096 -8.4193 3.9846 20 1 8.6365 -7.3487 3.1926 21 1 7.1863 -6.1942 4.7563 22 6 4.3500 -4.6026 0.9920 23 6 3.7357 -3.2008 1.1322 24 7 2.1751 -1.1396 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6882 2.1438 -0.0004 29 1 6.2205 3.1860 0.0000 30 1 5.9276 -1.7351 0.9461 31 1 5.8979 -1.5124 -0.8199 32 1 7.3877 -3.4111 -0.0710 33 1 6.0853 -3.9268 -1.1747 34 1 4.9617 -7.8685 2.0484 35 1 3.9402 -5.0989 0.1123 36 1 4.1307 -5.1908 1.8831 37 1 4.0708 -2.7453 2.0641 38 1 2.6485 -3.2798 1.1362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600127093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:12 Heat of formation + Delta-G solvation = 11.345886 kcal Electronic energy + Delta-G solvation = -23363.078356 eV Core-core repulsion = 19821.448136 eV Total energy + Delta-G solvation = -3541.630220 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.50935 -40.13887 -38.13817 -36.42233 -34.95371 -34.36832 -32.21956 -30.79775 -30.17959 -28.65700 -26.73509 -25.87084 -23.70556 -22.88776 -21.92826 -21.40608 -19.31861 -18.79277 -17.77490 -17.27121 -16.78993 -16.16471 -15.87772 -15.54513 -15.14437 -14.72612 -14.13411 -13.92557 -13.71524 -13.52535 -13.45016 -13.19863 -13.13630 -12.57817 -12.47879 -11.86035 -11.57543 -11.32993 -11.18153 -11.09998 -10.81180 -10.76016 -10.63957 -10.41053 -10.26913 -10.01676 -9.80563 -9.77887 -9.31408 -8.56454 -8.15636 -6.74921 -5.82898 -3.24966 0.26014 0.87767 2.20842 2.47468 3.26647 3.37351 3.43120 3.44341 3.65650 3.87275 4.46548 4.50143 4.58961 4.77647 4.99652 5.21959 5.32168 5.34300 5.38850 5.49994 5.59516 5.78438 5.80098 6.01682 6.05278 6.09324 6.10600 6.20815 6.42532 6.54640 6.66683 6.82226 7.01752 7.29386 7.39416 7.55656 7.57776 7.75781 8.11118 8.37801 9.15309 9.77907 10.35885 11.26403 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.004050 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.385511 B = 6912.630851 C = 7735.290754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.204 3.796 3 C -0.213 4.213 4 C 0.168 3.832 5 C 0.547 3.453 6 O -0.502 6.502 7 O -0.486 6.486 8 N -0.513 5.513 9 C 0.506 3.494 10 N -0.447 5.447 11 C 0.056 3.944 12 C 0.145 3.855 13 N -0.596 5.596 14 C -0.255 4.255 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.903 5.903 18 Si 0.904 3.096 19 H -0.290 1.290 20 H -0.282 1.282 21 H -0.284 1.284 22 C 0.178 3.822 23 C 0.045 3.955 24 N -0.510 5.510 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.157 0.843 29 H 0.414 0.586 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.256 0.744 35 H 0.033 0.967 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 16.962 -3.107 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.053 3.947 3 C -0.238 4.238 4 C 0.020 3.980 5 C 0.389 3.611 6 O -0.389 6.389 7 O -0.295 6.295 8 N -0.237 5.237 9 C 0.151 3.849 10 N -0.165 5.165 11 C -0.072 4.072 12 C 0.018 3.982 13 N -0.319 5.319 14 C -0.385 4.385 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.548 5.548 18 Si 0.734 3.266 19 H -0.216 1.216 20 H -0.208 1.208 21 H -0.211 1.211 22 C 0.051 3.949 23 C -0.081 4.081 24 N -0.230 5.230 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.175 0.825 29 H 0.273 0.727 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.672 15.484 -3.456 17.211 hybrid contribution 0.585 1.309 1.164 1.847 sum -6.087 16.793 -2.293 18.008 Atomic orbital electron populations 1.20809 0.86968 1.04403 1.04040 1.21675 0.97698 0.86812 0.88516 1.22449 0.93592 1.01363 1.06401 1.20131 0.90496 0.90363 0.96997 1.20461 0.81093 0.87608 0.71985 1.90896 1.72529 1.29726 1.45724 1.84712 1.19092 1.41294 1.84424 1.68487 1.40634 0.97627 1.16957 1.21427 0.86053 0.89066 0.88342 1.58514 1.08579 1.07456 1.41973 1.22708 0.82726 1.00044 1.01718 1.21095 0.96542 0.87910 0.92663 1.44180 1.01684 1.48360 1.37697 1.19164 0.97650 0.98906 1.22740 0.91450 1.25043 0.98560 0.95571 1.00354 1.70000 1.28331 1.15426 1.41015 0.86342 0.79421 0.78160 0.82673 1.21578 1.20823 1.21057 1.21047 0.82791 0.88856 1.02169 1.23250 1.00722 0.96684 0.87481 1.67863 1.08390 1.30351 1.16396 0.89293 0.89827 0.89392 0.82546 0.72705 0.93069 0.90315 0.91605 0.95398 0.93432 0.94857 0.88451 0.94194 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.22 36.01 0.37 -0.47 16 2 C 0.20 2.53 6.83 -82.26 -0.56 1.97 16 3 C -0.21 -2.55 9.39 -38.89 -0.37 -2.92 16 4 C 0.17 2.37 6.79 -82.67 -0.56 1.81 16 5 C 0.55 6.85 8.34 34.91 0.29 7.14 16 6 O -0.50 -6.68 17.20 -19.18 -0.33 -7.01 16 7 O -0.49 -5.09 13.28 -40.33 -0.54 -5.63 16 8 N -0.51 -8.54 8.47 -10.50 -0.09 -8.62 16 9 C 0.51 8.97 7.17 -322.95 -2.32 6.65 16 10 N -0.45 -8.64 4.69 -174.83 -0.82 -9.46 16 11 C 0.06 1.07 4.79 -3.70 -0.02 1.05 16 12 C 0.14 3.07 6.69 -3.60 -0.02 3.04 16 13 N -0.60 -14.89 3.03 -171.73 -0.52 -15.41 16 14 C -0.26 -6.91 9.63 -15.06 -0.14 -7.05 16 15 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 16 C 0.00 0.09 4.94 -17.43 -0.09 0.01 16 17 N -0.90 -25.74 11.15 55.49 0.62 -25.13 16 18 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.18 4.23 5.44 -3.37 -0.02 4.21 16 23 C 0.05 0.91 5.51 -3.46 -0.02 0.89 16 24 N -0.51 -8.20 9.54 -10.16 -0.10 -8.30 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.16 1.48 7.73 -52.49 -0.41 1.07 16 29 H 0.41 2.00 9.11 45.56 0.42 2.41 16 30 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.08 1.39 7.63 -51.93 -0.40 0.99 16 32 H 0.07 1.32 7.95 -51.93 -0.41 0.91 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 2.53 6.13 -51.93 -0.32 2.21 16 37 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.08 1.55 7.51 -51.93 -0.39 1.16 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -32.59 323.19 -9.40 -41.99 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.01 Total: 0.00 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: -3.46 Total: 16.34 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -0.91 Total: -66.92 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.87 Total: -12.63 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.59 -9.40 -41.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600127093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.333 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds