Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38828 * 120.37286 * 2 1 4 4 C 1.39498 * 118.41437 * 180.02562 * 3 2 1 5 5 C 1.48387 * 120.50832 * 180.02562 * 4 3 2 6 6 O 1.21389 * 119.99537 * 359.97438 * 5 4 3 7 7 O 1.34641 * 120.00299 * 179.97438 * 5 4 3 8 8 N 1.33100 * 118.98610 * 359.74958 * 4 3 2 9 9 C 1.32247 * 120.65470 * 0.50591 * 8 4 3 10 10 N 1.38430 * 119.13670 * 179.76029 * 9 8 4 11 11 C 1.46897 * 110.99808 * 359.72907 * 10 9 8 12 12 C 1.53247 * 109.33862 * 187.25245 * 11 10 9 13 13 N 1.47074 * 108.51990 * 306.16776 * 12 11 10 14 14 C 1.36942 * 120.88247 * 231.18498 * 13 12 11 15 15 H 1.08002 * 119.99420 * 27.10940 * 14 13 12 16 16 C 1.38813 * 120.00143 * 207.11011 * 14 13 12 17 17 N 1.31617 * 119.99715 * 16.76771 * 16 14 13 18 18 Si 1.86795 * 119.99947 * 196.77399 * 16 14 13 19 19 H 1.48494 * 109.47132 * 179.97438 * 18 16 14 20 20 H 1.48507 * 109.47079 * 299.99798 * 18 16 14 21 21 H 1.48501 * 109.47054 * 59.99515 * 18 16 14 22 22 C 1.47078 * 118.23813 * 51.45896 * 13 12 11 23 23 C 1.46903 * 111.00108 * 124.02921 * 10 9 8 24 24 N 1.32095 * 120.37846 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47342 * 269.98081 * 1 2 3 26 26 H 1.09000 * 109.47113 * 29.98132 * 1 2 3 27 27 H 1.09000 * 109.46789 * 149.97909 * 1 2 3 28 28 H 1.07995 * 120.79297 * 359.97438 * 3 2 1 29 29 H 0.96695 * 117.00163 * 179.97438 * 7 5 4 30 30 H 1.09004 * 109.49264 * 67.29365 * 11 10 9 31 31 H 1.09003 * 109.51682 * 307.22461 * 11 10 9 32 32 H 1.09000 * 109.62236 * 186.45985 * 12 11 10 33 33 H 1.08996 * 109.62383 * 65.88170 * 12 11 10 34 34 H 0.97002 * 119.99529 * 179.97438 * 17 16 14 35 35 H 1.09003 * 109.62879 * 68.24716 * 22 13 12 36 36 H 1.09001 * 109.63018 * 188.82828 * 22 13 12 37 37 H 1.09007 * 109.49038 * 292.70884 * 23 10 9 38 38 H 1.09004 * 109.49330 * 52.75986 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2090 1.1977 0.0000 4 6 3.6032 1.1501 -0.0005 5 6 4.3997 2.4020 0.0000 6 8 3.8385 3.4784 0.0005 7 8 5.7449 2.3441 0.0000 8 7 4.2080 -0.0356 0.0040 9 6 3.5011 -1.1532 -0.0010 10 7 4.1626 -2.3692 -0.0011 11 6 5.6188 -2.1762 -0.0016 12 6 6.3103 -3.5316 -0.1842 13 7 5.8058 -4.4555 0.8429 14 6 6.6687 -5.1643 1.6356 15 1 7.6543 -4.7749 1.8436 16 6 6.2765 -6.3832 2.1717 17 7 5.2355 -7.0166 1.6740 18 14 7.2259 -7.1245 3.5994 19 1 6.6096 -8.4193 3.9846 20 1 8.6365 -7.3487 3.1926 21 1 7.1863 -6.1942 4.7563 22 6 4.3500 -4.6026 0.9920 23 6 3.7357 -3.2008 1.1322 24 7 2.1751 -1.1396 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6882 2.1438 -0.0004 29 1 6.2205 3.1860 0.0000 30 1 5.9276 -1.7351 0.9461 31 1 5.8979 -1.5124 -0.8199 32 1 7.3877 -3.4111 -0.0710 33 1 6.0853 -3.9268 -1.1747 34 1 4.9617 -7.8685 2.0484 35 1 3.9402 -5.0989 0.1123 36 1 4.1307 -5.1908 1.8831 37 1 4.0708 -2.7453 2.0641 38 1 2.6485 -3.2798 1.1362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600127093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = -10.428155 kcal Electronic energy + Delta-G solvation = -23364.022549 eV Core-core repulsion = 19821.448136 eV Total energy + Delta-G solvation = -3542.574414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.63724 -41.13090 -39.64264 -37.32666 -36.53248 -35.56406 -33.79514 -32.35944 -31.84813 -29.62986 -28.48610 -26.86446 -25.41715 -24.49481 -23.34514 -22.43234 -21.03543 -19.83355 -19.12857 -18.53315 -18.14508 -17.32893 -17.17439 -16.64847 -16.55368 -16.31585 -15.59654 -15.42763 -15.29171 -15.15392 -14.60677 -14.53273 -14.28142 -13.74803 -13.29393 -13.17318 -13.10102 -12.74754 -12.63811 -12.50281 -12.36089 -12.21747 -12.15936 -12.03654 -11.83933 -11.76843 -11.62625 -11.13168 -10.59571 -10.47374 -9.54337 -8.75525 -7.89420 -5.34812 -0.78835 -0.21033 1.21137 1.49032 1.51121 1.57723 1.58280 2.01927 2.51302 2.54330 2.84233 3.26759 3.38738 3.59639 3.61811 3.80857 4.01622 4.15673 4.23364 4.30440 4.40770 4.47780 4.55725 4.72463 4.76664 4.81345 4.82408 4.94794 5.05974 5.23257 5.26084 5.30361 5.52612 5.57965 5.63727 5.67634 6.08750 6.34616 6.76862 6.95210 7.10313 7.78349 8.33570 9.18372 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.004050 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.385511 B = 6912.630851 C = 7735.290754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.202 3.798 3 C -0.191 4.191 4 C 0.146 3.854 5 C 0.555 3.445 6 O -0.511 6.511 7 O -0.489 6.489 8 N -0.530 5.530 9 C 0.488 3.512 10 N -0.462 5.462 11 C 0.076 3.924 12 C 0.144 3.856 13 N -0.613 5.613 14 C -0.268 4.268 15 H 0.071 0.929 16 C -0.046 4.046 17 N -0.934 5.934 18 Si 0.970 3.030 19 H -0.293 1.293 20 H -0.275 1.275 21 H -0.279 1.279 22 C 0.188 3.812 23 C 0.068 3.932 24 N -0.531 5.531 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.084 0.916 28 H 0.189 0.811 29 H 0.438 0.562 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.252 0.748 35 H 0.009 0.991 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 19.299 -2.920 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.052 3.948 3 C -0.215 4.215 4 C 0.000 4.000 5 C 0.397 3.603 6 O -0.399 6.399 7 O -0.301 6.301 8 N -0.254 5.254 9 C 0.132 3.868 10 N -0.181 5.181 11 C -0.053 4.053 12 C 0.018 3.982 13 N -0.337 5.337 14 C -0.398 4.398 15 H 0.089 0.911 16 C -0.242 4.242 17 N -0.580 5.580 18 Si 0.798 3.202 19 H -0.219 1.219 20 H -0.201 1.201 21 H -0.205 1.205 22 C 0.062 3.938 23 C -0.060 4.060 24 N -0.251 5.251 25 H 0.124 0.876 26 H 0.134 0.866 27 H 0.103 0.897 28 H 0.206 0.794 29 H 0.301 0.699 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.027 0.973 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.345 17.902 -3.286 19.628 hybrid contribution 0.741 0.745 1.049 1.484 sum -6.604 18.647 -2.237 19.908 Atomic orbital electron populations 1.21001 0.83546 1.05864 1.05486 1.22483 0.99654 0.85921 0.86745 1.22862 0.92866 1.02530 1.03287 1.20579 0.91866 0.90155 0.97377 1.20160 0.81582 0.86800 0.71780 1.90895 1.72865 1.29695 1.46469 1.84664 1.18301 1.43371 1.83811 1.68377 1.41213 0.98129 1.17695 1.21199 0.86739 0.88644 0.90198 1.58421 1.08585 1.09044 1.42049 1.22414 0.82843 0.98330 1.01672 1.21196 0.97353 0.88333 0.91313 1.44429 1.01932 1.48747 1.38621 1.19508 0.98092 0.99165 1.23045 0.91139 1.25794 0.99676 0.96084 1.02628 1.70158 1.29925 1.15636 1.42251 0.85313 0.78281 0.77025 0.79630 1.21900 1.20051 1.20523 1.20746 0.82748 0.90659 0.99650 1.22818 1.00793 0.94563 0.87790 1.67888 1.07791 1.32343 1.17103 0.87582 0.86631 0.89667 0.79406 0.69947 0.94031 0.88854 0.90715 0.96077 0.93865 0.97336 0.91143 0.95046 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.22 71.24 0.73 -0.53 16 2 C 0.20 4.49 6.83 42.66 0.29 4.78 16 3 C -0.19 -4.00 9.39 22.72 0.21 -3.78 16 4 C 0.15 3.84 6.79 41.96 0.28 4.13 16 5 C 0.56 12.66 8.34 70.53 0.59 13.25 16 6 O -0.51 -12.22 17.20 20.19 0.35 -11.88 16 7 O -0.49 -9.23 13.28 -55.49 -0.74 -9.97 16 8 N -0.53 -17.08 8.47 -187.15 -1.58 -18.66 16 9 C 0.49 17.00 7.17 261.54 1.88 18.88 16 10 N -0.46 -17.98 4.69 -707.05 -3.31 -21.30 16 11 C 0.08 2.87 4.79 86.39 0.41 3.29 16 12 C 0.14 6.19 6.69 86.35 0.58 6.77 16 13 N -0.61 -31.44 3.03 -697.24 -2.11 -33.56 16 14 C -0.27 -14.76 9.63 84.03 0.81 -13.95 16 15 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 16 C -0.05 -2.56 4.94 84.86 0.42 -2.14 16 17 N -0.93 -54.78 11.15 21.65 0.24 -54.54 16 18 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 C 0.19 9.32 5.44 86.50 0.47 9.79 16 23 C 0.07 2.78 5.51 86.54 0.48 3.25 16 24 N -0.53 -16.43 9.54 -186.05 -1.78 -18.21 16 25 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.12 0.72 8.09 -2.39 -0.02 0.70 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.19 2.70 7.73 -2.91 -0.02 2.68 16 29 H 0.44 3.17 9.11 -74.06 -0.67 2.50 16 30 H 0.04 1.64 8.13 -2.38 -0.02 1.62 16 31 H 0.09 3.25 7.63 -2.39 -0.02 3.23 16 32 H 0.07 3.02 7.95 -2.39 -0.02 3.00 16 33 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 3.84 6.13 -2.39 -0.01 3.83 16 37 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.09 3.56 7.51 -2.38 -0.02 3.54 16 Total: -1.00 -71.38 323.19 0.67 -70.71 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.42 Total: 7.17 kcal Atomic # 6 Polarization: 36.59 SS G_CDS: 7.15 Total: 43.74 kcal Atomic # 7 Polarization: -137.72 SS G_CDS: -8.55 Total: -146.27 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.39 Total: -21.85 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -71.38 0.67 -70.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600127093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.284 kcal (2) G-P(sol) polarization free energy of solvation -71.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds