Wall clock time and date at job start Tue Mar 31 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 119.99766 * 2 1 4 4 O 1.21286 * 120.00246 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99906 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47239 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47478 * 179.97438 * 6 5 3 8 8 C 1.34776 * 120.00145 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99909 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99819 * 180.02562 * 8 7 6 11 11 C 1.39460 * 119.99972 * 185.05980 * 10 8 7 12 12 C 1.38645 * 119.64595 * 185.36106 * 11 10 8 13 13 C 1.40826 * 118.66761 * 179.72552 * 12 11 10 14 14 C 1.41548 * 120.99155 * 180.25819 * 13 12 11 15 15 H 1.07999 * 119.99873 * 153.82130 * 14 13 12 16 16 C 1.40034 * 119.99952 * 333.81338 * 14 13 12 17 17 N 1.30737 * 119.99823 * 350.11710 * 16 14 13 18 18 Si 1.86794 * 119.99788 * 170.11244 * 16 14 13 19 19 H 1.48504 * 109.47287 * 60.00267 * 18 16 14 20 20 H 1.48504 * 109.47218 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47504 * 300.00484 * 18 16 14 22 22 C 1.41160 * 118.00910 * 0.27764 * 13 12 11 23 23 C 1.36589 * 119.12658 * 359.97438 * 22 13 12 24 24 N 1.32066 * 121.26106 * 0.03000 * 23 22 13 25 25 H 1.08992 * 109.47141 * 300.00166 * 1 2 3 26 26 H 1.08999 * 109.46945 * 59.99956 * 1 2 3 27 27 H 1.08995 * 109.46795 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00391 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47323 * 60.00203 * 5 3 2 30 30 H 1.09001 * 109.47400 * 300.00178 * 5 3 2 31 31 H 1.09003 * 109.47370 * 59.99508 * 6 5 3 32 32 H 1.09001 * 109.47132 * 300.00418 * 6 5 3 33 33 H 0.97001 * 119.99190 * 0.02562 * 7 6 5 34 34 H 0.97000 * 120.00046 * 5.06271 * 10 8 7 35 35 H 1.07996 * 120.66359 * 0.02562 * 12 11 10 36 36 H 0.97006 * 119.99686 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.43486 * 179.97438 * 22 13 12 38 38 H 1.08003 * 119.37267 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1559 2.6098 -0.0002 7 7 5.6209 2.6099 0.0010 8 6 6.2947 3.7771 0.0011 9 8 5.6868 4.8300 0.0007 10 7 7.6425 3.7771 0.0017 11 6 8.3397 4.9802 0.1083 12 6 9.7216 4.9842 -0.0038 13 6 10.4044 6.2114 0.1013 14 6 11.8140 6.2731 -0.0110 15 1 12.2896 7.1822 -0.3483 16 6 12.5920 5.1555 0.3154 17 7 12.0422 4.1256 0.9039 18 14 14.4153 5.1361 -0.0901 19 1 15.0899 6.2593 0.6090 20 1 15.0076 3.8488 0.3542 21 1 14.5980 5.2846 -1.5564 22 6 9.6409 7.3779 0.3224 23 6 8.2828 7.2742 0.4246 24 7 7.6749 6.1063 0.3211 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.9501 -0.8400 -0.0004 29 1 4.0096 0.6533 -0.8892 30 1 4.0089 0.6536 0.8908 31 1 3.7921 3.1243 0.8893 32 1 3.7928 3.1230 -0.8906 33 1 6.1058 1.7698 0.0017 34 1 8.1275 2.9403 -0.0721 35 1 10.2631 4.0653 -0.1732 36 1 12.5811 3.3513 1.1297 37 1 10.1243 8.3398 0.4097 38 1 7.6948 8.1641 0.5942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626732114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:33 Heat of formation + Delta-G solvation = -27.622898 kcal Electronic energy + Delta-G solvation = -21992.765935 eV Core-core repulsion = 18449.445901 eV Total energy + Delta-G solvation = -3543.320034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09486 -39.59298 -37.99944 -35.20744 -34.82023 -34.15285 -33.67851 -31.15909 -30.42775 -28.49550 -27.05603 -25.96312 -23.66341 -21.91681 -21.49224 -20.78827 -20.06203 -18.21240 -17.67012 -17.26547 -16.30103 -16.23745 -15.84330 -15.29907 -15.03681 -14.63853 -14.19596 -14.14037 -14.04675 -13.61604 -13.40046 -12.99707 -12.77543 -12.67843 -12.56634 -12.33849 -11.96674 -11.59739 -11.38742 -11.18372 -10.88213 -10.27762 -10.21882 -10.11073 -9.71138 -9.53133 -9.50645 -9.35616 -8.77402 -7.93837 -7.67916 -6.98961 -6.71435 -4.60109 2.34295 2.68211 2.73984 2.84563 3.01517 3.04960 3.24053 3.27871 3.86602 3.92484 4.36531 4.61258 4.70959 4.74730 4.81525 4.91334 5.14281 5.17303 5.43702 5.72916 5.85005 5.89516 5.99388 6.09640 6.58163 6.64305 6.71635 6.83990 6.98069 7.07299 7.16734 7.32110 7.46761 7.53110 7.89408 7.90301 8.14868 8.43197 8.49668 8.76108 8.78909 9.22896 9.77261 10.12017 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.032182 B = 0.002654 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.837528 B =10549.008971 C =11343.389334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.739 5.739 3 C 0.516 3.484 4 O -0.529 6.529 5 C -0.152 4.152 6 C 0.157 3.843 7 N -0.757 5.757 8 C 0.691 3.309 9 O -0.530 6.530 10 N -0.668 5.668 11 C 0.354 3.646 12 C -0.243 4.243 13 C 0.142 3.858 14 C -0.454 4.454 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.796 5.796 18 Si 0.915 3.085 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.282 4.282 23 C 0.119 3.881 24 N -0.552 5.552 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.402 0.598 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.390 0.610 34 H 0.404 0.596 35 H 0.133 0.867 36 H 0.280 0.720 37 H 0.102 0.898 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.637 -15.008 -1.589 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.392 5.392 3 C 0.302 3.698 4 O -0.405 6.405 5 C -0.193 4.193 6 C 0.032 3.968 7 N -0.416 5.416 8 C 0.391 3.609 9 O -0.400 6.400 10 N -0.316 5.316 11 C 0.128 3.872 12 C -0.269 4.269 13 C 0.134 3.866 14 C -0.486 4.486 15 H 0.099 0.901 16 C -0.143 4.143 17 N -0.423 5.423 18 Si 0.739 3.261 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.306 4.306 23 C -0.035 4.035 24 N -0.271 5.271 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.236 0.764 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.223 0.777 34 H 0.238 0.762 35 H 0.150 0.850 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.612 -13.510 -1.398 19.230 hybrid contribution 2.468 -1.482 -0.147 2.882 sum -11.145 -14.992 -1.545 18.744 Atomic orbital electron populations 1.21539 0.79543 1.02162 1.02514 1.45810 1.07872 1.08726 1.76781 1.20500 0.89925 0.83659 0.75764 1.90779 1.70418 1.31132 1.48151 1.21817 0.92355 0.99988 1.05130 1.20735 0.78468 0.93742 1.03882 1.45146 1.06584 1.07359 1.82496 1.16043 0.81953 0.84021 0.78913 1.91029 1.66736 1.29240 1.53041 1.42546 1.04553 1.08595 1.75901 1.17978 0.87806 0.84762 0.96667 1.21615 0.90039 1.01059 1.14147 1.17582 0.93326 0.90060 0.85637 1.19542 0.90830 0.98665 1.39531 0.90123 1.25942 1.01438 0.94574 0.92324 1.69743 1.38257 1.05330 1.28929 0.86259 0.81399 0.78382 0.80026 1.18933 1.20321 1.18819 1.21688 0.94873 0.98950 1.15108 1.21480 0.91859 0.93751 0.96391 1.67185 1.39435 0.97201 1.23309 0.92142 0.92159 0.90688 0.76429 0.88116 0.88079 0.90891 0.90943 0.77700 0.76181 0.84973 0.90853 0.88022 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.74 -4.66 5.71 -67.08 -0.38 -5.05 16 3 C 0.52 5.11 7.83 -10.99 -0.09 5.02 16 4 O -0.53 -7.89 15.98 5.55 0.09 -7.81 16 5 C -0.15 -1.18 5.81 -27.88 -0.16 -1.34 16 6 C 0.16 2.04 4.96 -4.04 -0.02 2.02 16 7 N -0.76 -10.34 5.56 -65.22 -0.36 -10.71 16 8 C 0.69 13.76 8.51 -86.92 -0.74 13.02 16 9 O -0.53 -13.21 14.64 5.29 0.08 -13.14 16 10 N -0.67 -13.38 5.40 -15.86 -0.09 -13.46 16 11 C 0.35 8.80 7.41 -154.67 -1.15 7.66 16 12 C -0.24 -6.22 8.62 -38.45 -0.33 -6.55 16 13 C 0.14 3.79 5.60 -106.55 -0.60 3.19 16 14 C -0.45 -11.73 9.14 -37.65 -0.34 -12.08 16 15 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 16 C 0.08 1.81 5.31 -17.34 -0.09 1.72 16 17 N -0.80 -19.54 10.70 55.55 0.59 -18.94 16 18 Si 0.91 17.98 29.57 -169.99 -5.03 12.95 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 C -0.28 -7.06 9.85 -39.07 -0.38 -7.45 16 23 C 0.12 2.95 11.10 -18.05 -0.20 2.75 16 24 N -0.55 -14.65 7.90 -12.75 -0.10 -14.75 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.40 1.17 8.83 -40.82 -0.36 0.81 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 32 H 0.07 1.10 8.10 -51.93 -0.42 0.67 16 33 H 0.39 3.75 8.49 -40.82 -0.35 3.40 16 34 H 0.40 6.47 8.72 -40.82 -0.36 6.12 16 35 H 0.13 3.33 6.11 -52.49 -0.32 3.01 16 36 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 37 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 38 H 0.12 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -36.47 332.96 -8.37 -44.84 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -4.73 Total: 11.93 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -3.46 Total: 9.11 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.34 Total: -62.91 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.17 Total: -20.94 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.47 -8.37 -44.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626732114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.219 kcal (2) G-P(sol) polarization free energy of solvation -36.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds