Wall clock time and date at job start Tue Mar 31 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 119.99766 * 2 1 4 4 O 1.21286 * 120.00246 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99906 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47239 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47478 * 179.97438 * 6 5 3 8 8 C 1.34776 * 120.00145 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99909 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99819 * 180.02562 * 8 7 6 11 11 C 1.39460 * 119.99972 * 185.05980 * 10 8 7 12 12 C 1.38645 * 119.64595 * 185.36106 * 11 10 8 13 13 C 1.40826 * 118.66761 * 179.72552 * 12 11 10 14 14 C 1.41548 * 120.99155 * 180.25819 * 13 12 11 15 15 H 1.07999 * 119.99873 * 153.82130 * 14 13 12 16 16 C 1.40034 * 119.99952 * 333.81338 * 14 13 12 17 17 N 1.30737 * 119.99823 * 350.11710 * 16 14 13 18 18 Si 1.86794 * 119.99788 * 170.11244 * 16 14 13 19 19 H 1.48504 * 109.47287 * 60.00267 * 18 16 14 20 20 H 1.48504 * 109.47218 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47504 * 300.00484 * 18 16 14 22 22 C 1.41160 * 118.00910 * 0.27764 * 13 12 11 23 23 C 1.36589 * 119.12658 * 359.97438 * 22 13 12 24 24 N 1.32066 * 121.26106 * 0.03000 * 23 22 13 25 25 H 1.08992 * 109.47141 * 300.00166 * 1 2 3 26 26 H 1.08999 * 109.46945 * 59.99956 * 1 2 3 27 27 H 1.08995 * 109.46795 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00391 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47323 * 60.00203 * 5 3 2 30 30 H 1.09001 * 109.47400 * 300.00178 * 5 3 2 31 31 H 1.09003 * 109.47370 * 59.99508 * 6 5 3 32 32 H 1.09001 * 109.47132 * 300.00418 * 6 5 3 33 33 H 0.97001 * 119.99190 * 0.02562 * 7 6 5 34 34 H 0.97000 * 120.00046 * 5.06271 * 10 8 7 35 35 H 1.07996 * 120.66359 * 0.02562 * 12 11 10 36 36 H 0.97006 * 119.99686 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.43486 * 179.97438 * 22 13 12 38 38 H 1.08003 * 119.37267 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1673 0.0006 6 6 4.1559 2.6098 -0.0002 7 7 5.6209 2.6099 0.0010 8 6 6.2947 3.7771 0.0011 9 8 5.6868 4.8300 0.0007 10 7 7.6425 3.7771 0.0017 11 6 8.3397 4.9802 0.1083 12 6 9.7216 4.9842 -0.0038 13 6 10.4044 6.2114 0.1013 14 6 11.8140 6.2731 -0.0110 15 1 12.2896 7.1822 -0.3483 16 6 12.5920 5.1555 0.3154 17 7 12.0422 4.1256 0.9039 18 14 14.4153 5.1361 -0.0901 19 1 15.0899 6.2593 0.6090 20 1 15.0076 3.8488 0.3542 21 1 14.5980 5.2846 -1.5564 22 6 9.6409 7.3779 0.3224 23 6 8.2828 7.2742 0.4246 24 7 7.6749 6.1063 0.3211 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.9501 -0.8400 -0.0004 29 1 4.0096 0.6533 -0.8892 30 1 4.0089 0.6536 0.8908 31 1 3.7921 3.1243 0.8893 32 1 3.7928 3.1230 -0.8906 33 1 6.1058 1.7698 0.0017 34 1 8.1275 2.9403 -0.0721 35 1 10.2631 4.0653 -0.1732 36 1 12.5811 3.3513 1.1297 37 1 10.1243 8.3398 0.4097 38 1 7.6948 8.1641 0.5942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626732114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:33 Heat of formation + Delta-G solvation = -56.469588 kcal Electronic energy + Delta-G solvation = -21994.016821 eV Core-core repulsion = 18449.445901 eV Total energy + Delta-G solvation = -3544.570920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.44174 -40.72014 -39.76982 -36.48414 -35.91519 -35.59949 -35.48171 -32.49097 -32.10564 -30.17999 -27.94053 -27.76339 -24.74802 -23.79561 -23.10505 -21.83464 -21.42194 -19.68836 -19.43037 -18.15966 -17.78335 -17.13758 -17.01452 -16.79028 -16.32396 -16.03144 -15.98831 -15.87155 -15.09086 -15.01715 -14.72358 -14.36817 -14.29285 -14.21738 -13.72921 -13.16212 -13.14179 -12.85656 -12.83042 -12.66546 -12.46560 -12.06772 -11.89752 -11.49801 -11.34772 -11.16194 -11.02860 -10.18177 -10.08655 -9.89716 -9.60636 -8.83748 -8.55414 -6.55595 0.85054 1.03370 1.43486 1.53196 1.54582 1.60231 1.60515 2.22608 2.28005 2.35471 2.87133 3.24682 3.64951 3.78087 4.04920 4.10234 4.17450 4.47401 4.56528 4.62212 4.71102 4.87026 4.87420 4.91101 4.96834 4.97561 5.12746 5.26808 5.43669 5.44136 5.51714 5.66878 5.87566 6.01370 6.29427 6.54526 6.58341 6.81628 6.85418 7.03118 7.26493 7.63505 7.91867 8.31681 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.032182 B = 0.002654 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.837528 B =10549.008971 C =11343.389334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.720 5.720 3 C 0.509 3.491 4 O -0.592 6.592 5 C -0.135 4.135 6 C 0.158 3.842 7 N -0.725 5.725 8 C 0.687 3.313 9 O -0.585 6.585 10 N -0.657 5.657 11 C 0.350 3.650 12 C -0.257 4.257 13 C 0.112 3.888 14 C -0.483 4.483 15 H 0.083 0.917 16 C 0.036 3.964 17 N -0.816 5.816 18 Si 0.991 3.009 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.260 1.260 22 C -0.295 4.295 23 C 0.111 3.889 24 N -0.582 5.582 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.113 0.887 28 H 0.423 0.577 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.416 0.584 34 H 0.422 0.578 35 H 0.133 0.867 36 H 0.292 0.708 37 H 0.116 0.884 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.461 -17.942 -1.734 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.373 5.373 3 C 0.296 3.704 4 O -0.472 6.472 5 C -0.175 4.175 6 C 0.033 3.967 7 N -0.385 5.385 8 C 0.387 3.613 9 O -0.459 6.459 10 N -0.307 5.307 11 C 0.123 3.877 12 C -0.283 4.283 13 C 0.104 3.896 14 C -0.513 4.513 15 H 0.101 0.899 16 C -0.180 4.180 17 N -0.442 5.442 18 Si 0.811 3.189 19 H -0.187 1.187 20 H -0.189 1.189 21 H -0.184 1.184 22 C -0.319 4.319 23 C -0.042 4.042 24 N -0.302 5.302 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.260 0.740 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.253 0.747 34 H 0.260 0.740 35 H 0.150 0.850 36 H 0.103 0.897 37 H 0.134 0.866 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.443 -16.592 -1.541 20.797 hybrid contribution 2.039 -0.649 -0.078 2.141 sum -10.404 -17.241 -1.618 20.202 Atomic orbital electron populations 1.21661 0.79143 1.04252 1.01191 1.45690 1.08242 1.08633 1.74709 1.20899 0.90825 0.83665 0.74983 1.90766 1.71652 1.33457 1.51324 1.21725 0.90738 0.96472 1.08533 1.20695 0.77473 0.97243 1.01315 1.44793 1.06840 1.06556 1.80307 1.16283 0.81701 0.84890 0.78449 1.90993 1.67686 1.31826 1.55439 1.42377 1.04818 1.08061 1.75445 1.18202 0.88075 0.85766 0.95677 1.21601 0.90374 1.00876 1.15427 1.18035 0.94332 0.91013 0.86238 1.19838 0.90993 0.99870 1.40630 0.89887 1.26815 1.06073 0.93639 0.91465 1.69771 1.40338 1.05820 1.28231 0.85121 0.75173 0.78865 0.79752 1.18664 1.18887 1.18446 1.21865 0.95072 0.99355 1.15582 1.21895 0.92224 0.94336 0.95737 1.67301 1.40210 0.98101 1.24606 0.93565 0.93524 0.86822 0.73977 0.84470 0.84637 0.93800 0.93559 0.74681 0.73995 0.84990 0.89717 0.86605 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.70 127.77 1.37 2.19 16 2 N -0.72 -7.32 5.71 -484.53 -2.77 -10.09 16 3 C 0.51 9.44 7.83 87.66 0.69 10.13 16 4 O -0.59 -18.21 15.98 -3.05 -0.05 -18.26 16 5 C -0.13 -1.70 5.81 29.85 0.17 -1.53 16 6 C 0.16 4.04 4.96 86.38 0.43 4.47 16 7 N -0.73 -18.82 5.56 -478.53 -2.66 -21.48 16 8 C 0.69 27.40 8.51 179.06 1.52 28.92 16 9 O -0.58 -30.04 14.64 -3.98 -0.06 -30.10 16 10 N -0.66 -26.21 5.40 -322.36 -1.74 -27.95 16 11 C 0.35 17.68 7.41 132.76 0.98 18.67 16 12 C -0.26 -13.36 8.62 23.00 0.20 -13.16 16 13 C 0.11 6.08 5.60 -21.11 -0.12 5.96 16 14 C -0.48 -25.05 9.14 23.52 0.21 -24.84 16 15 H 0.08 4.12 7.87 -2.91 -0.02 4.10 16 16 C 0.04 1.73 5.31 85.29 0.45 2.18 16 17 N -0.82 -39.39 10.70 21.84 0.23 -39.16 16 18 Si 0.99 35.67 29.57 68.60 2.03 37.70 16 19 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 20 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 21 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 22 C -0.29 -15.04 9.85 22.60 0.22 -14.82 16 23 C 0.11 5.63 11.10 84.27 0.94 6.57 16 24 N -0.58 -31.59 7.90 -194.27 -1.53 -33.13 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.42 0.80 8.83 -92.71 -0.82 -0.02 16 29 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 1.40 8.10 -2.39 -0.02 1.38 16 32 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 33 H 0.42 6.66 8.49 -92.71 -0.79 5.87 16 34 H 0.42 13.06 8.72 -92.71 -0.81 12.25 16 35 H 0.13 6.72 6.11 -2.91 -0.02 6.70 16 36 H 0.29 12.54 8.29 -92.70 -0.77 11.77 16 37 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 38 H 0.15 6.40 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -83.92 332.96 -0.76 -84.68 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -1.29 Total: 33.04 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 7.07 Total: 24.75 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -8.47 Total: -131.80 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.11 Total: -48.35 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -83.92 -0.76 -84.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626732114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.208 kcal (2) G-P(sol) polarization free energy of solvation -83.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds