Wall clock time and date at job start Tue Mar 31 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47043 * 89.97438 * 6 5 4 8 8 C 1.50701 * 109.47043 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00098 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00389 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00144 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47140 * 90.00313 * 11 10 8 13 13 H 1.08003 * 119.99438 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00218 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00023 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99738 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47364 * 60.00288 * 16 14 12 18 18 H 1.48509 * 109.46734 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47372 * 299.99956 * 16 14 12 20 20 C 1.46504 * 119.99589 * 0.02562 * 10 8 7 21 21 C 1.52992 * 109.47326 * 89.99370 * 20 10 8 22 22 C 1.47206 * 109.47334 * 179.97438 * 21 20 10 23 23 N 7.72456 * 111.56011 * 113.63714 * 2 1 3 24 24 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 25 25 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 26 26 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 27 27 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 28 28 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 29 29 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 30 30 H 1.08992 * 109.47125 * 299.99572 * 7 6 5 31 31 H 1.08998 * 109.47323 * 60.00339 * 7 6 5 32 32 H 1.09001 * 109.47371 * 210.00044 * 11 10 8 33 33 H 1.08994 * 109.47614 * 330.00372 * 11 10 8 34 34 H 0.97007 * 120.00402 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.46779 * 210.00249 * 20 10 8 36 36 H 1.09000 * 109.46524 * 329.99235 * 20 10 8 37 37 H 1.08996 * 109.47909 * 300.00187 * 21 20 10 38 38 H 1.09007 * 109.47053 * 60.00479 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2404 -1.7473 1.4442 8 6 6.4923 -2.5862 1.4452 9 8 6.9965 -2.9245 0.3953 10 7 7.0518 -2.9606 2.6129 11 6 8.2685 -3.7766 2.6138 12 6 9.4771 -2.8764 2.6133 13 1 9.3513 -1.8037 2.6120 14 6 10.7432 -3.4221 2.6146 15 7 10.8962 -4.7282 2.6167 16 14 12.2412 -2.3061 2.6148 17 1 12.2193 -1.4482 3.8266 18 1 13.4746 -3.1333 2.6156 19 1 12.2209 -1.4499 1.4016 20 6 6.4425 -2.5524 3.8811 21 6 5.4278 -3.6088 4.3228 22 6 4.8160 -3.1990 5.5974 23 7 4.3456 -2.8804 6.5814 24 8 2.3021 -1.0832 0.0002 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5143 27 1 -0.3633 0.8901 0.5136 28 1 4.6248 -2.4057 -0.5124 29 1 5.6151 -0.9265 -0.5120 30 1 5.4333 -0.8056 1.9579 31 1 4.4431 -2.2847 1.9576 32 1 8.2839 -4.4050 3.5043 33 1 8.2843 -4.4064 1.7244 34 1 11.7871 -5.1123 2.6172 35 1 7.2175 -2.4528 4.6410 36 1 5.9372 -1.5956 3.7500 37 1 4.6528 -3.7084 3.5629 38 1 5.9332 -4.5657 4.4539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630842540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:50 Heat of formation + Delta-G solvation = 20.682625 kcal Electronic energy + Delta-G solvation = -22492.983641 eV Core-core repulsion = 18951.758292 eV Total energy + Delta-G solvation = -3541.225349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.37234 -39.48287 -36.94233 -36.30545 -35.42616 -34.52736 -32.95804 -32.15055 -30.90853 -28.73327 -27.35031 -25.33202 -24.06948 -23.03286 -22.70100 -21.77308 -18.66469 -17.79050 -17.48741 -17.29206 -16.61787 -16.50744 -15.65402 -15.48145 -14.87743 -14.74907 -14.49922 -14.26754 -13.86398 -13.69129 -13.29288 -13.12934 -12.85111 -12.64626 -12.49594 -12.48440 -12.23883 -12.11282 -11.95759 -11.79287 -11.43360 -11.29742 -11.05951 -11.02296 -10.84626 -10.63716 -10.22915 -9.77359 -9.67374 -9.14167 -8.50050 -7.94012 -6.12147 -4.17076 0.96775 2.06760 2.21993 2.67709 2.76708 3.15848 3.29438 3.34089 3.37348 3.48521 3.69639 4.10369 4.25268 4.39917 4.60720 4.72097 4.87844 4.89056 4.95578 5.01087 5.05172 5.12795 5.23253 5.24779 5.31160 5.41162 5.46730 5.53108 5.74727 5.79819 5.86737 6.02929 6.85006 7.28512 7.35587 7.52998 7.83418 8.12453 8.15550 8.15809 8.73754 8.90118 9.48816 10.95958 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.003853 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.237659 B = 7265.779414 C = 8518.743378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.152 3.848 3 N -0.290 5.290 4 N -0.286 5.286 5 C 0.174 3.826 6 C -0.010 4.010 7 C -0.143 4.143 8 C 0.512 3.488 9 O -0.531 6.531 10 N -0.594 5.594 11 C 0.245 3.755 12 C -0.531 4.531 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.116 3.884 21 C -0.050 4.050 22 C 0.216 3.784 23 N -0.444 5.444 24 O -0.225 6.225 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.840 3.728 -2.701 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 N -0.137 5.137 4 N -0.132 5.132 5 C -0.036 4.036 6 C -0.049 4.049 7 C -0.184 4.184 8 C 0.298 3.702 9 O -0.408 6.408 10 N -0.325 5.325 11 C 0.126 3.874 12 C -0.570 4.570 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.011 4.011 21 C -0.092 4.092 22 C -0.102 4.102 23 N -0.121 5.121 24 O -0.105 6.105 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.141 0.859 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.728 5.095 -1.793 19.491 hybrid contribution 0.693 -0.737 -0.243 1.040 sum -18.035 4.358 -2.037 18.666 Atomic orbital electron populations 1.20329 0.80334 1.05648 1.05145 1.27998 0.97848 0.79813 1.00186 1.74401 0.96207 1.25726 1.17399 1.74443 1.11987 1.09324 1.17473 1.28205 0.85155 0.91676 0.98600 1.20004 0.87133 0.99062 0.98662 1.21770 0.97933 1.02167 0.96544 1.20028 0.84874 0.80899 0.84396 1.90718 1.63730 1.55633 1.30697 1.48199 1.28023 1.52864 1.03446 1.19374 0.79048 0.90188 0.98769 1.21379 0.90621 0.93391 1.51621 0.92331 1.24907 0.99008 0.95088 0.94889 1.69902 1.23291 1.09986 1.50064 0.86573 0.81764 0.80476 0.78727 1.20220 1.21206 1.20096 1.21336 0.95844 0.95321 0.88578 1.19896 0.99237 1.02645 0.87401 1.29110 0.93238 0.93257 0.94622 1.81222 1.09978 1.09053 1.11890 1.84795 1.17709 1.38286 1.69689 0.88414 0.88908 0.87640 0.87448 0.85946 0.88190 0.88938 0.94647 0.93438 0.92570 0.88579 0.90559 0.87641 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.00 0.38 0.10 16 2 C 0.15 1.59 8.48 -12.94 -0.11 1.48 16 3 N -0.29 -3.96 12.22 32.55 0.40 -3.57 16 4 N -0.29 -4.20 12.22 32.55 0.40 -3.80 16 5 C 0.17 2.18 7.73 -12.94 -0.10 2.08 16 6 C -0.01 -0.11 5.13 -27.88 -0.14 -0.26 16 7 C -0.14 -1.67 4.23 -27.88 -0.12 -1.79 16 8 C 0.51 8.57 7.67 -10.98 -0.08 8.49 16 9 O -0.53 -11.23 15.56 5.55 0.09 -11.14 16 10 N -0.59 -10.20 2.46 -175.07 -0.43 -10.63 16 11 C 0.24 5.57 5.16 -5.20 -0.03 5.54 16 12 C -0.53 -13.85 9.39 -34.44 -0.32 -14.17 16 13 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 16 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.12 1.45 5.17 -4.04 -0.02 1.43 16 21 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 22 C 0.22 2.53 15.43 -20.75 -0.32 2.21 16 23 N -0.44 -6.44 18.54 42.16 0.78 -5.66 16 24 O -0.23 -2.57 10.87 5.37 0.06 -2.51 16 25 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.11 1.16 8.10 -51.93 -0.42 0.74 16 29 H 0.12 1.52 8.10 -51.93 -0.42 1.10 16 30 H 0.10 1.11 7.40 -51.93 -0.38 0.73 16 31 H 0.09 0.84 7.19 -51.93 -0.37 0.46 16 32 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 36 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 37 H 0.11 0.80 7.22 -51.93 -0.38 0.43 16 38 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -34.59 343.12 -3.73 -38.32 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.77 Total: -3.86 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.14 Total: 6.06 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 1.88 Total: -47.99 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.14 Total: -13.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.59 -3.73 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630842540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.001 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds