Wall clock time and date at job start Tue Mar 31 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47520 * 2 1 4 4 C 1.50695 * 109.47342 * 240.00084 * 2 1 3 5 5 H 1.08008 * 120.00201 * 240.00395 * 4 2 1 6 6 C 1.37884 * 120.00130 * 59.99631 * 4 2 1 7 7 N 1.31510 * 119.99616 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00079 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46815 * 90.00385 * 8 6 4 10 10 H 1.48497 * 109.46969 * 210.00270 * 8 6 4 11 11 H 1.48500 * 109.47084 * 330.00436 * 8 6 4 12 12 C 1.53001 * 109.47223 * 120.00284 * 2 1 3 13 13 S 1.81410 * 109.46862 * 299.99764 * 12 2 1 14 14 C 1.81398 * 102.99736 * 174.91503 * 13 12 2 15 15 H 1.09003 * 109.43829 * 306.98993 * 14 13 12 16 16 C 1.53064 * 109.43858 * 66.90630 * 14 13 12 17 17 C 1.53407 * 108.34515 * 168.17116 * 16 14 13 18 18 O 1.42814 * 108.37732 * 295.35720 * 17 16 14 19 19 C 1.35850 * 117.88129 * 49.16534 * 18 17 16 20 20 C 1.39142 * 118.49617 * 162.99615 * 19 18 17 21 21 C 1.37971 * 120.21043 * 179.58820 * 20 19 18 22 22 C 1.38286 * 119.95826 * 359.97438 * 21 20 19 23 23 C 1.38099 * 119.98808 * 0.07517 * 22 21 20 24 24 C 1.38376 * 121.80262 * 342.71616 * 19 18 17 25 25 H 1.09000 * 109.47237 * 299.99985 * 1 2 3 26 26 H 1.08997 * 109.46640 * 59.99715 * 1 2 3 27 27 H 1.08999 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47233 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46954 * 300.00440 * 3 2 1 30 30 H 1.09000 * 109.46853 * 59.99780 * 3 2 1 31 31 H 0.97000 * 119.99697 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47562 * 180.02562 * 12 2 1 33 33 H 1.08999 * 109.47227 * 59.99775 * 12 2 1 34 34 H 1.09004 * 109.69477 * 287.89191 * 16 14 13 35 35 H 1.08996 * 109.69774 * 48.44237 * 16 14 13 36 36 H 1.08992 * 109.68636 * 55.03598 * 17 16 14 37 37 H 1.09002 * 109.68057 * 175.59867 * 17 16 14 38 38 H 1.07999 * 119.89242 * 359.57220 * 20 19 18 39 39 H 1.08000 * 120.01763 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.00650 * 180.08308 * 22 21 20 41 41 H 1.08000 * 119.84549 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1616 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1339 2.7304 14 6 2.0014 -0.9380 4.0800 15 1 1.6686 -1.9595 3.8958 16 6 3.5301 -0.9050 4.1497 17 6 3.9679 -1.5678 5.4621 18 8 3.4915 -0.7729 6.5488 19 6 2.1859 -0.3979 6.5369 20 6 1.6142 0.0539 7.7223 21 6 0.2933 0.4517 7.7486 22 6 -0.4658 0.4023 6.5938 23 6 0.0980 -0.0464 5.4157 24 6 1.4228 -0.4493 5.3837 25 1 -0.3634 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7095 1.1617 -3.4844 32 1 3.1300 -0.7209 1.2495 33 1 1.6767 -1.7490 1.2492 34 1 3.9482 -1.4520 3.3046 35 1 3.8767 0.1281 4.1263 36 1 3.5434 -2.5695 5.5271 37 1 5.0558 -1.6264 5.4986 38 1 2.2062 0.0930 8.6247 39 1 -0.1474 0.8014 8.6704 40 1 -1.4995 0.7148 6.6131 41 1 -0.4969 -0.0836 4.5151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652717338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:54 Heat of formation + Delta-G solvation = -28.471406 kcal Electronic energy + Delta-G solvation = -21121.550717 eV Core-core repulsion = 18092.194352 eV Total energy + Delta-G solvation = -3029.356364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.124 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63491 -37.50739 -35.94208 -34.34998 -31.54558 -30.67257 -30.21994 -26.53250 -25.61791 -25.48948 -25.11563 -23.71392 -22.49539 -20.08633 -18.98747 -17.81922 -16.72298 -16.21590 -15.99090 -15.59525 -15.04411 -14.73841 -14.32791 -14.04803 -13.90315 -13.49205 -13.34555 -13.12643 -12.73918 -12.54716 -12.31268 -11.62558 -11.57292 -11.36058 -11.26838 -11.18017 -10.92201 -10.83869 -10.72553 -10.48400 -10.27545 -10.06521 -9.53594 -9.51317 -9.38561 -8.75721 -8.57149 -8.38442 -8.17606 -7.02223 -6.00244 -4.11901 1.21381 1.42251 2.22703 3.19697 3.25708 3.26300 3.33836 3.36602 3.78547 4.38762 4.51673 4.60533 4.70078 4.97877 5.04242 5.08571 5.25258 5.25552 5.33898 5.45549 5.50496 5.54378 5.81008 5.96407 6.00681 6.05259 6.12209 6.27146 6.47566 6.53155 6.55944 6.76314 6.83426 6.98366 7.15442 7.16580 7.38997 7.40241 7.64254 7.70570 8.06855 8.18057 8.40606 8.87286 9.53350 11.00444 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.003835 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.947247 B = 7298.788311 C = 7927.779620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.082 3.918 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.054 0.946 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.059 4.059 13 S -0.237 6.237 14 C -0.030 4.030 15 H 0.091 0.909 16 C -0.154 4.154 17 C 0.065 3.935 18 O -0.317 6.317 19 C 0.138 3.862 20 C -0.156 4.156 21 C -0.088 4.088 22 C -0.155 4.155 23 C -0.067 4.067 24 C -0.136 4.136 25 H 0.021 0.979 26 H 0.082 0.918 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.083 0.917 30 H 0.020 0.980 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 -2.939 17.407 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.072 0.928 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.207 4.207 13 S -0.004 6.004 14 C -0.158 4.158 15 H 0.109 0.891 16 C -0.193 4.193 17 C -0.012 4.012 18 O -0.231 6.231 19 C 0.091 3.909 20 C -0.174 4.174 21 C -0.106 4.106 22 C -0.173 4.173 23 C -0.087 4.087 24 C -0.137 4.137 25 H 0.040 0.960 26 H 0.101 0.899 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.782 -1.828 17.419 17.533 hybrid contribution 1.010 -1.784 -1.279 2.416 sum 1.792 -3.612 16.141 16.637 Atomic orbital electron populations 1.21848 0.97352 0.99028 1.00702 1.17958 0.93012 0.92472 0.88490 1.21838 0.98240 0.98201 1.00600 1.21026 1.31689 1.12053 0.89961 0.92809 1.24882 0.94905 0.94911 0.98724 1.69826 1.36465 1.22561 1.23191 0.86601 0.79192 0.79429 0.82794 1.20720 1.21184 1.20024 1.23899 1.01839 1.00795 0.94193 1.87046 1.75380 1.37850 1.00138 1.21956 0.97083 1.01796 0.94986 0.89072 1.22623 0.94644 1.03737 0.98344 1.23002 1.00050 0.93194 0.84942 1.85954 1.22908 1.67558 1.46715 1.18678 0.83125 0.96023 0.93032 1.20515 0.95539 1.05342 0.96049 1.20918 0.93101 0.98188 0.98411 1.21042 1.00358 1.03119 0.92798 1.21170 0.93765 0.95141 0.98587 1.19323 0.95356 1.06508 0.92562 0.95978 0.89903 0.95799 0.95744 0.89849 0.96146 0.92968 0.91647 0.91751 0.89485 0.89137 0.91885 0.87314 0.85431 0.85608 0.85814 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.01 37.16 0.30 -2.84 16 2 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 3 C -0.13 -3.15 8.01 37.16 0.30 -2.85 16 4 C -0.51 -13.31 8.01 -34.44 -0.28 -13.58 16 5 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.01 9.35 55.43 0.52 -23.49 16 8 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C -0.06 -1.20 4.70 37.16 0.17 -1.03 16 13 S -0.24 -4.27 16.68 -107.50 -1.79 -6.06 16 14 C -0.03 -0.44 2.81 -27.81 -0.08 -0.52 16 15 H 0.09 1.30 8.14 -51.92 -0.42 0.88 16 16 C -0.15 -1.99 5.33 -26.49 -0.14 -2.13 16 17 C 0.06 0.71 7.03 37.37 0.26 0.97 16 18 O -0.32 -4.20 10.27 -19.27 -0.20 -4.40 16 19 C 0.14 1.90 6.47 -39.20 -0.25 1.65 16 20 C -0.16 -1.87 9.94 -39.34 -0.39 -2.26 16 21 C -0.09 -0.95 10.04 -39.66 -0.40 -1.35 16 22 C -0.15 -1.83 10.04 -39.61 -0.40 -2.22 16 23 C -0.07 -0.94 9.02 -39.53 -0.36 -1.29 16 24 C -0.14 -1.96 5.44 -104.44 -0.57 -2.53 16 25 H 0.02 0.48 6.92 -51.93 -0.36 0.13 16 26 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 30 H 0.02 0.45 6.91 -51.93 -0.36 0.10 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 32 H 0.06 1.29 7.88 -51.92 -0.41 0.88 16 33 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 34 H 0.09 1.06 7.87 -51.93 -0.41 0.66 16 35 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 41 H 0.14 1.96 7.15 -52.49 -0.38 1.59 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -27.84 333.75 -9.77 -37.61 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.31 Total: 2.08 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -2.00 Total: -26.41 kcal Atomic # 7 Polarization: -24.01 SS G_CDS: 0.52 Total: -23.49 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.20 Total: -4.40 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -4.27 SS G_CDS: -1.79 Total: -6.06 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.84 -9.77 -37.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652717338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.143 kcal (2) G-P(sol) polarization free energy of solvation -27.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds