Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47520 * 2 1 4 4 C 1.50695 * 109.47342 * 240.00084 * 2 1 3 5 5 H 1.08008 * 120.00201 * 240.00395 * 4 2 1 6 6 C 1.37884 * 120.00130 * 59.99631 * 4 2 1 7 7 N 1.31510 * 119.99616 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00079 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46815 * 90.00385 * 8 6 4 10 10 H 1.48497 * 109.46969 * 210.00270 * 8 6 4 11 11 H 1.48500 * 109.47084 * 330.00436 * 8 6 4 12 12 C 1.53001 * 109.47223 * 120.00284 * 2 1 3 13 13 S 1.81410 * 109.46862 * 299.99764 * 12 2 1 14 14 C 1.81398 * 102.99736 * 174.91503 * 13 12 2 15 15 H 1.09003 * 109.43829 * 306.98993 * 14 13 12 16 16 C 1.53064 * 109.43858 * 66.90630 * 14 13 12 17 17 C 1.53407 * 108.34515 * 168.17116 * 16 14 13 18 18 O 1.42814 * 108.37732 * 295.35720 * 17 16 14 19 19 C 1.35850 * 117.88129 * 49.16534 * 18 17 16 20 20 C 1.39142 * 118.49617 * 162.99615 * 19 18 17 21 21 C 1.37971 * 120.21043 * 179.58820 * 20 19 18 22 22 C 1.38286 * 119.95826 * 359.97438 * 21 20 19 23 23 C 1.38099 * 119.98808 * 0.07517 * 22 21 20 24 24 C 1.38376 * 121.80262 * 342.71616 * 19 18 17 25 25 H 1.09000 * 109.47237 * 299.99985 * 1 2 3 26 26 H 1.08997 * 109.46640 * 59.99715 * 1 2 3 27 27 H 1.08999 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47233 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46954 * 300.00440 * 3 2 1 30 30 H 1.09000 * 109.46853 * 59.99780 * 3 2 1 31 31 H 0.97000 * 119.99697 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47562 * 180.02562 * 12 2 1 33 33 H 1.08999 * 109.47227 * 59.99775 * 12 2 1 34 34 H 1.09004 * 109.69477 * 287.89191 * 16 14 13 35 35 H 1.08996 * 109.69774 * 48.44237 * 16 14 13 36 36 H 1.08992 * 109.68636 * 55.03598 * 17 16 14 37 37 H 1.09002 * 109.68057 * 175.59867 * 17 16 14 38 38 H 1.07999 * 119.89242 * 359.57220 * 20 19 18 39 39 H 1.08000 * 120.01763 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.00650 * 180.08308 * 22 21 20 41 41 H 1.08000 * 119.84549 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1616 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1339 2.7304 14 6 2.0014 -0.9380 4.0800 15 1 1.6686 -1.9595 3.8958 16 6 3.5301 -0.9050 4.1497 17 6 3.9679 -1.5678 5.4621 18 8 3.4915 -0.7729 6.5488 19 6 2.1859 -0.3979 6.5369 20 6 1.6142 0.0539 7.7223 21 6 0.2933 0.4517 7.7486 22 6 -0.4658 0.4023 6.5938 23 6 0.0980 -0.0464 5.4157 24 6 1.4228 -0.4493 5.3837 25 1 -0.3634 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7095 1.1617 -3.4844 32 1 3.1300 -0.7209 1.2495 33 1 1.6767 -1.7490 1.2492 34 1 3.9482 -1.4520 3.3046 35 1 3.8767 0.1281 4.1263 36 1 3.5434 -2.5695 5.5271 37 1 5.0558 -1.6264 5.4986 38 1 2.2062 0.0930 8.6247 39 1 -0.1474 0.8014 8.6704 40 1 -1.4995 0.7148 6.6131 41 1 -0.4969 -0.0836 4.5151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652717338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = -40.531050 kcal Electronic energy + Delta-G solvation = -21122.073662 eV Core-core repulsion = 18092.194352 eV Total energy + Delta-G solvation = -3029.879310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59801 -38.43784 -37.83985 -35.38746 -33.52967 -31.61478 -31.17584 -28.11138 -27.57880 -27.15897 -26.62590 -24.68628 -23.46865 -21.14518 -20.79067 -18.80049 -17.99981 -17.66230 -17.23512 -16.91285 -16.60322 -16.00392 -15.55291 -15.33180 -15.03731 -14.90809 -14.65054 -14.29921 -14.25620 -13.88170 -13.58069 -13.23477 -13.21239 -12.82282 -12.70672 -12.50387 -12.43444 -12.29345 -12.23365 -12.03886 -11.82169 -11.56694 -11.42356 -11.28600 -11.00305 -10.40509 -10.34798 -9.75723 -9.14700 -8.47036 -8.01298 -6.19413 0.19196 0.45431 0.94131 1.42225 1.44423 1.52686 1.77903 2.34156 2.45460 2.82601 3.21600 3.48263 3.57475 3.73111 4.04006 4.08055 4.23679 4.29966 4.33326 4.37298 4.49088 4.52623 4.55961 4.62969 4.75132 4.88095 4.93426 4.98396 5.06368 5.08387 5.22223 5.24428 5.34354 5.45107 5.51623 5.61261 5.65034 5.65452 5.86329 6.08886 6.20144 6.40545 6.43968 6.86063 7.48475 8.97564 Molecular weight = 292.12amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.003835 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.947247 B = 7298.788311 C = 7927.779620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.073 3.927 3 C -0.118 4.118 4 C -0.525 4.525 5 H 0.051 0.949 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.270 1.270 12 C -0.051 4.051 13 S -0.258 6.258 14 C -0.017 4.017 15 H 0.093 0.907 16 C -0.152 4.152 17 C 0.066 3.934 18 O -0.326 6.326 19 C 0.124 3.876 20 C -0.160 4.160 21 C -0.079 4.079 22 C -0.157 4.157 23 C -0.087 4.087 24 C -0.157 4.157 25 H 0.032 0.968 26 H 0.056 0.944 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.808 -3.623 19.429 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.072 3.928 3 C -0.176 4.176 4 C -0.564 4.564 5 H 0.070 0.930 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.776 3.224 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.195 1.195 12 C -0.199 4.199 13 S -0.025 6.025 14 C -0.145 4.145 15 H 0.111 0.889 16 C -0.191 4.191 17 C -0.010 4.010 18 O -0.240 6.240 19 C 0.077 3.923 20 C -0.179 4.179 21 C -0.097 4.097 22 C -0.175 4.175 23 C -0.106 4.106 24 C -0.159 4.159 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.179 0.821 40 H 0.163 0.837 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.289 -2.516 19.435 19.640 hybrid contribution 0.817 -1.551 -1.772 2.493 sum 2.105 -4.067 17.663 18.247 Atomic orbital electron populations 1.21680 0.97623 0.98503 0.99857 1.17960 0.92820 0.92404 0.89655 1.21667 0.97828 0.98414 0.99672 1.21346 1.31703 1.12168 0.91206 0.93040 1.25564 0.95164 0.95567 1.01287 1.69964 1.37199 1.23536 1.23542 0.85697 0.78787 0.78358 0.79604 1.20446 1.21140 1.19493 1.23553 1.01766 1.00432 0.94118 1.87006 1.75862 1.38996 1.00652 1.21962 0.98333 1.00705 0.93547 0.88855 1.22576 0.93214 1.03271 1.00032 1.23187 1.01703 0.93081 0.83016 1.85943 1.22686 1.67954 1.47416 1.18922 0.83347 0.96571 0.93436 1.20887 0.96281 1.04542 0.96158 1.21333 0.92534 0.96503 0.99316 1.21346 1.01526 1.02262 0.92372 1.21218 0.93768 0.96449 0.99179 1.19360 0.95859 1.08069 0.92587 0.94911 0.92518 0.96055 0.96029 0.92434 0.95281 0.93140 0.91485 0.91723 0.88906 0.90611 0.90692 0.84535 0.83480 0.82119 0.83726 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.01 71.98 0.58 -5.19 16 2 C 0.07 3.52 0.52 -52.93 -0.03 3.49 16 3 C -0.12 -5.77 8.01 71.98 0.58 -5.19 16 4 C -0.52 -27.72 8.01 25.60 0.21 -27.52 16 5 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 6 C 0.02 1.27 5.15 84.66 0.44 1.70 16 7 N -0.90 -50.08 9.35 21.45 0.20 -49.88 16 8 Si 0.95 42.52 29.54 68.60 2.03 44.55 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 C -0.05 -2.05 4.70 71.98 0.34 -1.71 16 13 S -0.26 -9.29 16.68 -56.49 -0.94 -10.23 16 14 C -0.02 -0.50 2.81 29.89 0.08 -0.42 16 15 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 16 C -0.15 -3.75 5.33 30.75 0.16 -3.58 16 17 C 0.07 1.30 7.03 72.12 0.51 1.81 16 18 O -0.33 -7.97 10.27 -91.86 -0.94 -8.91 16 19 C 0.12 3.20 6.47 22.52 0.15 3.35 16 20 C -0.16 -3.41 9.94 22.42 0.22 -3.19 16 21 C -0.08 -1.45 10.04 22.22 0.22 -1.23 16 22 C -0.16 -3.37 10.04 22.25 0.22 -3.14 16 23 C -0.09 -2.35 9.02 22.30 0.20 -2.14 16 24 C -0.16 -4.39 5.44 -19.74 -0.11 -4.50 16 25 H 0.03 1.47 6.92 -2.39 -0.02 1.46 16 26 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 30 H 0.03 1.32 6.91 -2.39 -0.02 1.31 16 31 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 32 H 0.07 2.64 7.88 -2.39 -0.02 2.62 16 33 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.09 2.16 7.87 -2.39 -0.02 2.14 16 35 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 41 H 0.12 3.59 7.15 -2.91 -0.02 3.57 16 Total: -1.00 -59.81 333.75 5.11 -54.70 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.00 Total: 17.24 kcal Atomic # 6 Polarization: -51.23 SS G_CDS: 3.77 Total: -47.46 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.20 Total: -49.88 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.94 Total: -8.91 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -9.29 SS G_CDS: -0.94 Total: -10.23 kcal Total: -59.81 5.11 -54.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652717338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.166 kcal (2) G-P(sol) polarization free energy of solvation -59.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds