Wall clock time and date at job start Tue Mar 31 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47242 * 2 1 4 4 C 1.38849 * 120.34401 * 90.00293 * 3 2 1 5 5 C 1.38345 * 118.49499 * 180.02562 * 4 3 2 6 6 C 1.39040 * 119.10289 * 0.02562 * 5 4 3 7 7 N 1.39400 * 119.69624 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99674 * 174.90741 * 7 6 5 9 9 O 1.21575 * 120.00403 * 5.10062 * 8 7 6 10 10 N 1.34782 * 119.99642 * 185.09046 * 8 7 6 11 11 C 1.46500 * 119.99762 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46990 * 180.02562 * 11 10 8 13 13 O 1.21291 * 119.99964 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00044 * 180.02562 * 12 11 10 15 15 C 1.37097 * 120.00197 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00002 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00060 * 180.02562 * 15 14 12 18 18 N 1.31415 * 120.00095 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00001 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47239 * 89.99817 * 19 17 15 21 21 H 1.48503 * 109.47276 * 210.00216 * 19 17 15 22 22 H 1.48505 * 109.46923 * 329.99855 * 19 17 15 23 23 N 1.32352 * 120.60886 * 359.97404 * 6 5 4 24 24 C 1.31945 * 121.63243 * 359.75390 * 23 6 5 25 25 H 1.09002 * 109.47444 * 59.99569 * 1 2 3 26 26 H 1.09005 * 109.47553 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46932 * 299.99530 * 1 2 3 28 28 H 1.09004 * 109.46704 * 239.99989 * 2 1 3 29 29 H 1.09002 * 109.47444 * 120.00431 * 2 1 3 30 30 H 1.08006 * 120.74776 * 359.97438 * 4 3 2 31 31 H 1.08003 * 120.44587 * 179.97438 * 5 4 3 32 32 H 0.96992 * 119.99896 * 354.91244 * 7 6 5 33 33 H 0.96996 * 120.00004 * 0.02562 * 10 8 7 34 34 H 1.09008 * 109.47287 * 300.00554 * 11 10 8 35 35 H 1.08995 * 109.47036 * 60.00189 * 11 10 8 36 36 H 0.97006 * 120.00033 * 359.97438 * 14 12 11 37 37 H 0.97000 * 119.99813 * 180.02562 * 18 17 15 38 38 H 1.07997 * 119.57584 * 180.25895 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2662 2.0821 1.1983 5 6 2.7266 3.3859 1.1536 6 6 2.9378 3.9866 -0.0824 7 7 3.4010 5.3000 -0.1418 8 6 3.7056 5.8539 -1.3322 9 8 3.4894 5.2424 -2.3604 10 7 4.2498 7.0860 -1.3826 11 6 4.5803 7.6883 -2.6765 12 6 5.1715 9.0570 -2.4570 13 8 5.3041 9.4869 -1.3306 14 7 5.5528 9.8035 -3.5124 15 6 6.0902 11.0489 -3.3128 16 1 6.2083 11.4316 -2.3098 17 6 6.4828 11.8187 -4.4008 18 7 6.3396 11.3527 -5.6212 19 14 7.2156 13.5153 -4.1288 20 1 8.6900 13.4017 -3.9931 21 1 6.8907 14.3863 -5.2868 22 1 6.6486 14.1066 -2.8902 23 7 2.7031 3.3228 -1.2031 24 6 2.2688 2.0770 -1.1915 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0918 1.5900 2.1438 31 1 2.9186 3.9301 2.0666 32 1 3.5042 5.8152 0.6735 33 1 4.4225 7.5738 -0.5622 34 1 5.3035 7.0595 -3.1959 35 1 3.6759 7.7751 -3.2785 36 1 5.4471 9.4596 -4.4132 37 1 6.6141 11.8900 -6.3808 38 1 2.0921 1.5653 -2.1260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680197316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:19 Heat of formation + Delta-G solvation = -24.476745 kcal Electronic energy + Delta-G solvation = -21803.599866 eV Core-core repulsion = 18260.416260 eV Total energy + Delta-G solvation = -3543.183606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89224 -39.46913 -38.19076 -35.63587 -34.40129 -33.88739 -33.52496 -32.11326 -31.37881 -29.24606 -27.41888 -24.77668 -24.13486 -23.87729 -21.62017 -20.71819 -19.61886 -18.65275 -18.24518 -17.74370 -16.26964 -15.77243 -15.66473 -15.49349 -15.15752 -14.57170 -14.51930 -14.27022 -14.11301 -13.96634 -13.80828 -13.50324 -13.25272 -13.01470 -12.51265 -12.19620 -11.97551 -11.63271 -11.58982 -11.30632 -11.13129 -10.62107 -10.46171 -10.33047 -10.23234 -9.92844 -9.63869 -9.08349 -8.81430 -8.63626 -8.18394 -8.10083 -6.51430 -3.93576 1.00119 1.21480 2.50321 3.11589 3.22089 3.27256 3.27828 3.73788 3.87067 3.99168 4.15395 4.44796 4.56876 4.67800 4.77265 4.88300 4.92339 5.05666 5.08528 5.17203 5.33431 5.45969 5.58040 5.66921 5.78163 5.88856 5.90750 5.99484 6.06248 6.10315 6.23429 6.63837 6.70287 6.85861 7.45941 7.84537 7.92079 8.24046 8.44758 8.74621 9.04384 9.39186 9.86884 10.65393 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.057524 B = 0.002303 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.638952 B =12157.227308 C =12549.552283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 C -0.178 4.178 4 C -0.045 4.045 5 C -0.211 4.211 6 C 0.381 3.619 7 N -0.671 5.671 8 C 0.693 3.307 9 O -0.534 6.534 10 N -0.721 5.721 11 C 0.129 3.871 12 C 0.429 3.571 13 O -0.599 6.599 14 N -0.548 5.548 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.269 1.269 23 N -0.470 5.470 24 C 0.138 3.862 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.414 0.586 33 H 0.406 0.594 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 -19.572 11.826 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.182 4.182 4 C -0.071 4.071 5 C -0.235 4.235 6 C 0.149 3.851 7 N -0.319 5.319 8 C 0.392 3.608 9 O -0.406 6.406 10 N -0.380 5.380 11 C 0.001 3.999 12 C 0.214 3.786 13 O -0.486 6.486 14 N -0.183 5.183 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.534 5.534 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 N -0.183 5.183 24 C -0.021 4.021 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.250 0.750 33 H 0.244 0.756 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.805 -19.166 10.534 23.576 hybrid contribution 0.350 0.844 1.094 1.425 sum -8.455 -18.322 11.628 23.289 Atomic orbital electron populations 1.21775 0.94873 1.01628 1.02270 1.20367 0.95967 0.91919 1.02884 1.20790 1.04945 0.98285 0.94205 1.21164 0.94667 0.93151 0.98130 1.21399 1.08123 0.97038 0.96904 1.18200 0.92370 0.84874 0.89672 1.42726 1.67460 1.11877 1.09848 1.15933 0.79447 0.81764 0.83651 1.91033 1.56566 1.61636 1.31341 1.44811 1.66221 1.16164 1.10761 1.20814 1.01083 0.93606 0.84420 1.19734 0.85758 0.87060 0.86035 1.90488 1.61487 1.73442 1.23138 1.41786 1.53268 1.15614 1.07639 1.19724 1.37200 0.91369 0.95165 0.87676 1.25336 0.97468 1.00384 0.94581 1.69618 1.46901 1.38729 0.98143 0.85805 0.79139 0.80965 0.78058 1.20274 1.20795 1.19335 1.67737 1.13742 1.08456 1.28373 1.22586 0.92775 0.89242 0.97508 0.92447 0.92437 0.92702 0.90866 0.91156 0.84801 0.84722 0.74986 0.75617 0.89830 0.89820 0.76972 0.91572 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.07 -0.46 6.09 -27.89 -0.17 -0.63 16 3 C -0.18 -1.62 5.15 -104.46 -0.54 -2.16 16 4 C -0.05 -0.38 9.85 -39.32 -0.39 -0.77 16 5 C -0.21 -2.03 9.94 -39.24 -0.39 -2.42 16 6 C 0.38 5.09 7.42 -154.71 -1.15 3.94 16 7 N -0.67 -8.80 5.40 -15.81 -0.09 -8.89 16 8 C 0.69 11.79 8.52 -86.91 -0.74 11.05 16 9 O -0.53 -11.00 14.60 5.30 0.08 -10.92 16 10 N -0.72 -12.19 5.53 -66.41 -0.37 -12.55 16 11 C 0.13 2.42 6.15 -5.19 -0.03 2.38 16 12 C 0.43 9.83 7.85 -10.99 -0.09 9.75 16 13 O -0.60 -15.23 15.24 5.55 0.08 -15.14 16 14 N -0.55 -13.63 5.29 -10.97 -0.06 -13.69 16 15 C -0.31 -8.29 9.68 -14.93 -0.14 -8.44 16 16 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -23.93 13.05 55.50 0.72 -23.20 16 19 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 N -0.47 -7.22 7.89 -12.37 -0.10 -7.32 16 24 C 0.14 1.62 10.85 -17.57 -0.19 1.43 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 31 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 32 H 0.41 3.86 8.72 -40.82 -0.36 3.51 16 33 H 0.41 6.51 7.46 -40.82 -0.30 6.20 16 34 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -33.97 335.38 -7.96 -41.94 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -4.72 Total: 15.00 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: -3.56 Total: 14.19 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: 0.12 Total: -65.65 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: 0.16 Total: -26.06 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.97 -7.96 -41.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680197316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.459 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds