Wall clock time and date at job start Tue Mar 31 2020 06:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47463 * 355.36427 * 3 2 1 5 5 H 1.48510 * 109.46810 * 115.36392 * 3 2 1 6 6 H 1.48498 * 109.47153 * 235.35658 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46500 * 114.39503 * 272.68209 * 11 10 9 13 13 C 1.34775 * 119.99438 * 248.58795 * 12 11 10 14 14 O 1.21283 * 120.00677 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99865 * 180.02562 * 13 12 11 16 16 H 1.09004 * 109.47113 * 344.99444 * 15 13 12 17 17 F 1.39903 * 109.47324 * 104.99333 * 15 13 12 18 18 C 1.53003 * 109.47231 * 224.99592 * 15 13 12 19 19 C 1.50698 * 109.47000 * 174.99849 * 18 15 13 20 20 C 1.38233 * 119.99866 * 269.72552 * 19 18 15 21 21 C 1.38239 * 119.99900 * 179.76801 * 20 19 18 22 22 C 1.38240 * 120.00054 * 0.50985 * 21 20 19 23 23 C 1.38240 * 119.99591 * 359.74281 * 22 21 20 24 24 C 1.38228 * 120.00185 * 0.02562 * 23 22 21 25 25 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 26 26 H 0.97005 * 119.99783 * 184.87568 * 1 2 3 27 27 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 28 28 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 29 29 H 1.09000 * 114.26213 * 139.79217 * 11 10 9 30 30 H 0.96999 * 120.00177 * 68.58488 * 12 11 10 31 31 H 1.09000 * 109.47130 * 294.99846 * 18 15 13 32 32 H 1.08999 * 109.46566 * 54.99828 * 18 15 13 33 33 H 1.07997 * 120.00511 * 0.02562 * 20 19 18 34 34 H 1.07998 * 119.99969 * 180.22925 * 21 20 19 35 35 H 1.07991 * 120.00112 * 179.72046 * 22 21 20 36 36 H 1.07995 * 119.99364 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.00441 * 179.97438 * 24 23 22 38 38 H 1.09003 * 113.46756 * 321.86183 * 25 9 7 39 39 H 1.09002 * 113.46950 * 92.29471 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1131 5 1 3.0170 1.7465 1.2652 6 1 3.1868 1.6485 -1.1518 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4675 -1.3241 1.7649 13 6 6.5829 -0.9333 2.4128 14 8 7.5356 -0.5211 1.7857 15 6 6.6466 -1.0096 3.9165 16 1 5.6412 -1.1419 4.3165 17 9 7.4455 -2.0939 4.2950 18 6 7.2486 0.2845 4.4677 19 6 7.1995 0.2597 5.9737 20 6 6.0987 0.7677 6.6378 21 6 6.0515 0.7405 8.0191 22 6 7.1098 0.2150 8.7367 23 6 8.2130 -0.2882 8.0726 24 6 8.2580 -0.2654 6.6913 25 6 4.4119 -2.2308 -0.3351 26 1 -0.4850 -0.8371 0.0714 27 1 4.6555 0.1232 -1.2580 28 1 4.2793 0.6479 0.4390 29 1 6.3880 -1.2388 -0.1697 30 1 4.7057 -1.6541 2.2664 31 1 8.2842 0.3722 4.1393 32 1 6.6772 1.1366 4.0995 33 1 5.2736 1.1819 6.0775 34 1 5.1899 1.1340 8.5379 35 1 7.0750 0.1980 9.8159 36 1 9.0399 -0.6983 8.6332 37 1 9.1200 -0.6581 6.1724 38 1 4.2436 -3.1278 0.2608 39 1 4.6311 -2.4530 -1.3795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692266359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:00 Heat of formation + Delta-G solvation = 1.246078 kcal Electronic energy + Delta-G solvation = -22803.720690 eV Core-core repulsion = 19241.732547 eV Total energy + Delta-G solvation = -3561.988143 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.94193 -39.92256 -39.37256 -38.06042 -33.89619 -33.61674 -32.22431 -31.07817 -29.64810 -27.89387 -25.47037 -25.08886 -22.76558 -22.60707 -21.34609 -20.56894 -19.63235 -17.94755 -17.55321 -16.89704 -16.77288 -16.08310 -15.61395 -15.36232 -15.06243 -14.92833 -14.51748 -14.06297 -13.74627 -13.63831 -13.55939 -13.23315 -13.13922 -12.87354 -12.67831 -12.13682 -12.10379 -11.45366 -11.44452 -11.26049 -11.15746 -11.10743 -10.63377 -10.39657 -9.80162 -9.60318 -9.28408 -9.10766 -8.95161 -8.91350 -8.67538 -7.25303 -6.40161 -3.32040 1.10486 1.21629 2.44622 3.00924 3.34932 3.38662 3.57901 3.59421 4.29773 4.43935 4.51875 4.55302 4.63361 4.63825 4.76284 4.82520 4.90458 4.96039 5.04116 5.31147 5.33700 5.34604 5.59716 5.62835 5.75052 5.83106 5.84507 5.87594 6.10019 6.15073 6.22250 6.26215 6.30933 6.31877 6.41997 6.79975 6.82267 6.99654 7.57168 8.15252 8.16418 8.89062 9.41500 10.26589 11.12402 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.003991 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.973782 B = 7014.342739 C = 7875.178544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.022 4.022 3 Si 1.071 2.929 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.309 4.309 8 H 0.083 0.917 9 N -0.628 5.628 10 C 0.086 3.914 11 C 0.095 3.905 12 N -0.684 5.684 13 C 0.494 3.506 14 O -0.529 6.529 15 C 0.090 3.910 16 H 0.102 0.898 17 F -0.189 7.189 18 C -0.097 4.097 19 C -0.087 4.087 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.104 4.104 25 C 0.114 3.886 26 H 0.261 0.739 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.409 0.591 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.050 0.950 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.611 -0.559 14.336 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.221 4.221 3 Si 0.904 3.096 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.435 4.435 8 H 0.101 0.899 9 N -0.357 5.357 10 C -0.041 4.041 11 C -0.012 4.012 12 N -0.334 5.334 13 C 0.277 3.723 14 O -0.405 6.405 15 C 0.050 3.950 16 H 0.119 0.881 17 F -0.169 7.169 18 C -0.135 4.135 19 C -0.087 4.087 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.013 4.013 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.245 0.755 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.069 0.931 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.822 1.338 13.845 21.067 hybrid contribution -0.331 -1.951 0.218 1.991 sum 15.492 -0.614 14.063 20.932 Atomic orbital electron populations 1.70925 1.05368 1.29522 1.51576 1.25720 0.96400 1.00971 0.99048 0.83671 0.73708 0.76000 0.76196 1.22226 1.22343 1.21361 1.20117 0.78744 0.95795 1.48880 0.89899 1.46136 1.02415 1.01611 1.85556 1.23265 0.87761 0.94244 0.98798 1.22573 0.99059 0.99708 0.79843 1.45581 1.16468 1.63794 1.07590 1.20822 0.83303 0.78449 0.89748 1.90705 1.36136 1.45319 1.68346 1.21540 0.95792 0.85613 0.92015 0.88055 1.92879 1.75958 1.56213 1.91877 1.21040 1.04512 0.96251 0.91707 1.19712 0.94973 0.99469 0.94575 1.21159 0.97748 0.99527 0.94667 1.21160 0.98719 0.99798 0.94106 1.21180 0.94063 0.98904 0.99865 1.21150 0.98404 0.99995 0.94403 1.21111 0.98393 0.98589 0.94096 1.22706 0.87012 0.93582 0.97977 0.92842 0.92562 0.92771 0.87638 0.75484 0.88360 0.88510 0.85661 0.85921 0.86175 0.86055 0.85819 0.93132 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.76 13.70 55.49 0.76 -28.00 16 2 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 3 Si 1.07 26.31 25.13 -169.99 -4.27 22.04 16 4 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 5 H -0.30 -6.82 6.65 56.52 0.38 -6.44 16 6 H -0.29 -6.63 6.13 56.52 0.35 -6.28 16 7 C -0.31 -8.53 11.08 -15.06 -0.17 -8.70 16 8 H 0.08 2.41 8.05 -52.49 -0.42 1.99 16 9 N -0.63 -14.57 3.70 -184.60 -0.68 -15.25 16 10 C 0.09 1.76 5.54 -8.36 -0.05 1.72 16 11 C 0.09 1.62 4.61 -67.67 -0.31 1.31 16 12 N -0.68 -10.74 5.40 -53.48 -0.29 -11.03 16 13 C 0.49 7.52 7.17 -10.99 -0.08 7.44 16 14 O -0.53 -9.51 16.20 5.55 0.09 -9.42 16 15 C 0.09 1.11 3.76 -27.88 -0.10 1.00 16 16 H 0.10 1.06 8.00 -51.93 -0.42 0.65 16 17 F -0.19 -2.55 16.76 2.25 0.04 -2.52 16 18 C -0.10 -1.09 4.83 -27.88 -0.13 -1.22 16 19 C -0.09 -0.94 5.00 -104.62 -0.52 -1.46 16 20 C -0.11 -1.15 9.70 -39.58 -0.38 -1.53 16 21 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 24 C -0.10 -1.06 9.55 -39.58 -0.38 -1.44 16 25 C 0.11 2.10 8.44 -8.51 -0.07 2.02 16 26 H 0.26 7.96 8.73 -40.82 -0.36 7.60 16 27 H 0.06 1.13 7.73 -51.93 -0.40 0.73 16 28 H 0.05 1.17 4.65 -51.93 -0.24 0.93 16 29 H 0.11 1.71 7.45 -51.93 -0.39 1.33 16 30 H 0.41 6.07 8.65 -40.82 -0.35 5.71 16 31 H 0.10 1.13 7.99 -51.93 -0.42 0.72 16 32 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -32.97 331.99 -8.09 -41.06 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.25 Total: 4.20 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -3.49 Total: -6.08 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.21 Total: -54.28 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -4.27 Total: 22.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.97 -8.09 -41.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692266359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.302 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds