Wall clock time and date at job start Tue Mar 31 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47463 * 355.36427 * 3 2 1 5 5 H 1.48510 * 109.46810 * 115.36392 * 3 2 1 6 6 H 1.48498 * 109.47153 * 235.35658 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46500 * 114.39503 * 272.68209 * 11 10 9 13 13 C 1.34775 * 119.99438 * 248.58795 * 12 11 10 14 14 O 1.21283 * 120.00677 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99865 * 180.02562 * 13 12 11 16 16 H 1.09004 * 109.47113 * 344.99444 * 15 13 12 17 17 F 1.39903 * 109.47324 * 104.99333 * 15 13 12 18 18 C 1.53003 * 109.47231 * 224.99592 * 15 13 12 19 19 C 1.50698 * 109.47000 * 174.99849 * 18 15 13 20 20 C 1.38233 * 119.99866 * 269.72552 * 19 18 15 21 21 C 1.38239 * 119.99900 * 179.76801 * 20 19 18 22 22 C 1.38240 * 120.00054 * 0.50985 * 21 20 19 23 23 C 1.38240 * 119.99591 * 359.74281 * 22 21 20 24 24 C 1.38228 * 120.00185 * 0.02562 * 23 22 21 25 25 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 26 26 H 0.97005 * 119.99783 * 184.87568 * 1 2 3 27 27 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 28 28 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 29 29 H 1.09000 * 114.26213 * 139.79217 * 11 10 9 30 30 H 0.96999 * 120.00177 * 68.58488 * 12 11 10 31 31 H 1.09000 * 109.47130 * 294.99846 * 18 15 13 32 32 H 1.08999 * 109.46566 * 54.99828 * 18 15 13 33 33 H 1.07997 * 120.00511 * 0.02562 * 20 19 18 34 34 H 1.07998 * 119.99969 * 180.22925 * 21 20 19 35 35 H 1.07991 * 120.00112 * 179.72046 * 22 21 20 36 36 H 1.07995 * 119.99364 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.00441 * 179.97438 * 24 23 22 38 38 H 1.09003 * 113.46756 * 321.86183 * 25 9 7 39 39 H 1.09002 * 113.46950 * 92.29471 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1131 5 1 3.0170 1.7465 1.2652 6 1 3.1868 1.6485 -1.1518 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4675 -1.3241 1.7649 13 6 6.5829 -0.9333 2.4128 14 8 7.5356 -0.5211 1.7857 15 6 6.6466 -1.0096 3.9165 16 1 5.6412 -1.1419 4.3165 17 9 7.4455 -2.0939 4.2950 18 6 7.2486 0.2845 4.4677 19 6 7.1995 0.2597 5.9737 20 6 6.0987 0.7677 6.6378 21 6 6.0515 0.7405 8.0191 22 6 7.1098 0.2150 8.7367 23 6 8.2130 -0.2882 8.0726 24 6 8.2580 -0.2654 6.6913 25 6 4.4119 -2.2308 -0.3351 26 1 -0.4850 -0.8371 0.0714 27 1 4.6555 0.1232 -1.2580 28 1 4.2793 0.6479 0.4390 29 1 6.3880 -1.2388 -0.1697 30 1 4.7057 -1.6541 2.2664 31 1 8.2842 0.3722 4.1393 32 1 6.6772 1.1366 4.0995 33 1 5.2736 1.1819 6.0775 34 1 5.1899 1.1340 8.5379 35 1 7.0750 0.1980 9.8159 36 1 9.0399 -0.6983 8.6332 37 1 9.1200 -0.6581 6.1724 38 1 4.2436 -3.1278 0.2608 39 1 4.6311 -2.4530 -1.3795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692266359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:59 Heat of formation + Delta-G solvation = -20.238449 kcal Electronic energy + Delta-G solvation = -22804.652329 eV Core-core repulsion = 19241.732547 eV Total energy + Delta-G solvation = -3562.919782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.97621 -41.27055 -40.13985 -39.50274 -35.21153 -34.74263 -34.10449 -31.76778 -30.67817 -29.57908 -27.04867 -26.16431 -24.26419 -23.46226 -22.29634 -21.66544 -21.24529 -19.55313 -19.05873 -17.92638 -17.65098 -17.30147 -16.97942 -16.49614 -16.04156 -15.89893 -15.83308 -15.61230 -15.24749 -15.16321 -14.85871 -14.27630 -14.07997 -13.73057 -13.63075 -13.56932 -13.32190 -13.00066 -12.80622 -12.48430 -12.34047 -12.07135 -11.98610 -11.85086 -11.36854 -11.28393 -11.06278 -10.94855 -10.10046 -9.81349 -9.65848 -9.22347 -8.64258 -5.47066 0.38053 0.51002 1.23156 1.38896 1.46263 1.66251 1.83036 2.52446 2.84390 2.92259 3.23015 3.26692 3.51684 3.54531 3.59423 3.81860 3.94672 4.12147 4.17991 4.25616 4.31700 4.32631 4.54397 4.62046 4.63283 4.65112 4.73276 4.79574 4.83383 4.85360 5.12288 5.17096 5.18085 5.44490 5.57591 5.63592 5.68257 5.95246 6.11876 6.33117 6.69702 6.93410 7.32325 8.25501 8.91363 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.003991 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.973782 B = 7014.342739 C = 7875.178544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 1.107 2.893 4 H -0.308 1.308 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.288 4.288 8 H 0.055 0.945 9 N -0.655 5.655 10 C 0.077 3.923 11 C 0.116 3.884 12 N -0.685 5.685 13 C 0.497 3.503 14 O -0.555 6.555 15 C 0.095 3.905 16 H 0.123 0.877 17 F -0.195 7.195 18 C -0.092 4.092 19 C -0.100 4.100 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.119 4.119 25 C 0.117 3.883 26 H 0.248 0.752 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.124 0.876 30 H 0.414 0.586 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.125 0.875 38 H 0.060 0.940 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.620 -0.409 15.430 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.273 4.273 3 Si 0.934 3.066 4 H -0.237 1.237 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.415 4.415 8 H 0.073 0.927 9 N -0.384 5.384 10 C -0.049 4.049 11 C 0.010 3.990 12 N -0.335 5.335 13 C 0.282 3.718 14 O -0.433 6.433 15 C 0.056 3.944 16 H 0.140 0.860 17 F -0.175 7.175 18 C -0.130 4.130 19 C -0.100 4.100 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.009 4.009 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.250 0.750 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.143 0.857 38 H 0.078 0.922 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.888 1.444 14.949 23.357 hybrid contribution -0.890 -2.116 -0.091 2.297 sum 16.998 -0.671 14.857 22.586 Atomic orbital electron populations 1.71022 1.06753 1.28754 1.55227 1.26885 0.96390 1.04302 0.99711 0.83250 0.73083 0.72263 0.77975 1.23677 1.20064 1.18972 1.19982 0.81065 0.94450 1.46019 0.92668 1.46168 1.01613 1.04705 1.85951 1.23487 0.87566 0.94379 0.99482 1.22323 0.98867 0.97195 0.80654 1.45627 1.16933 1.63821 1.07140 1.21272 0.82477 0.77282 0.90818 1.90694 1.36991 1.46385 1.69242 1.21607 0.96918 0.85972 0.89912 0.85965 1.92868 1.76304 1.56641 1.91730 1.20984 1.04037 0.95687 0.92281 1.19711 0.95625 1.00480 0.94149 1.21335 0.97860 0.99804 0.95353 1.21455 0.99546 0.99607 0.93948 1.21520 0.93602 0.98008 1.01170 1.21445 0.99224 0.99687 0.94136 1.21276 0.98508 0.99016 0.94876 1.22901 0.85303 0.93311 0.99384 0.94313 0.91466 0.93535 0.85862 0.74970 0.89061 0.88076 0.85052 0.84229 0.83894 0.84098 0.85671 0.92183 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.53 13.70 21.65 0.30 -61.23 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 1.11 52.50 25.13 68.60 1.72 54.23 16 4 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 5 H -0.27 -11.87 6.65 99.48 0.66 -11.21 16 6 H -0.26 -11.42 6.13 99.48 0.61 -10.81 16 7 C -0.29 -15.89 11.08 84.03 0.93 -14.96 16 8 H 0.06 3.29 8.05 -2.91 -0.02 3.26 16 9 N -0.65 -29.27 3.70 -737.96 -2.73 -31.99 16 10 C 0.08 2.94 5.54 83.27 0.46 3.40 16 11 C 0.12 3.65 4.61 45.55 0.21 3.86 16 12 N -0.69 -19.79 5.40 -441.51 -2.38 -22.17 16 13 C 0.50 14.05 7.17 87.66 0.63 14.68 16 14 O -0.56 -18.84 16.20 -3.04 -0.05 -18.89 16 15 C 0.10 2.17 3.76 29.85 0.11 2.28 16 16 H 0.12 2.28 8.00 -2.39 -0.02 2.26 16 17 F -0.19 -4.95 16.76 44.97 0.75 -4.20 16 18 C -0.09 -1.93 4.83 29.85 0.14 -1.79 16 19 C -0.10 -2.00 5.00 -19.87 -0.10 -2.10 16 20 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16 21 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 22 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 24 C -0.12 -2.27 9.55 22.27 0.21 -2.06 16 25 C 0.12 3.96 8.44 83.18 0.70 4.67 16 26 H 0.25 15.69 8.73 -92.70 -0.81 14.88 16 27 H 0.07 2.47 7.73 -2.39 -0.02 2.45 16 28 H 0.05 1.87 4.65 -2.39 -0.01 1.86 16 29 H 0.12 3.55 7.45 -2.39 -0.02 3.54 16 30 H 0.41 11.32 8.65 -92.71 -0.80 10.52 16 31 H 0.09 2.02 7.99 -2.39 -0.02 2.00 16 32 H 0.10 2.00 8.08 -2.39 -0.02 1.98 16 33 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.14 1.44 8.06 -2.92 -0.02 1.42 16 36 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -70.83 331.99 2.35 -68.48 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.08 Total: 19.52 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 4.66 Total: -3.73 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -4.81 Total: -115.40 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.05 Total: -18.89 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.75 Total: -4.20 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 1.72 Total: 54.23 kcal Total: -70.83 2.35 -68.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692266359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.242 kcal (2) G-P(sol) polarization free energy of solvation -70.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds