Wall clock time and date at job start Tue Mar 31 2020 06:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 119.99524 * 2 1 4 4 H 1.48500 * 109.47058 * 269.99852 * 3 2 1 5 5 H 1.48497 * 109.47502 * 29.99824 * 3 2 1 6 6 H 1.48495 * 109.46816 * 150.00047 * 3 2 1 7 7 C 1.38805 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00277 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00296 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46653 * 35.00067 * 10 9 7 12 12 C 1.52995 * 109.47041 * 155.00197 * 10 9 7 13 13 N 1.46503 * 109.47354 * 304.99803 * 12 10 9 14 14 C 1.34774 * 119.99841 * 180.02562 * 13 12 10 15 15 O 1.21275 * 120.00406 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99866 * 180.02562 * 14 13 12 17 17 O 1.42895 * 109.47382 * 179.97438 * 16 14 13 18 18 C 1.42897 * 114.00154 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47310 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.46768 * 299.99836 * 19 18 17 21 21 F 1.39898 * 109.47339 * 59.99742 * 19 18 17 22 22 C 1.53003 * 109.46936 * 275.00238 * 10 9 7 23 23 C 1.53001 * 117.51964 * 356.28241 * 22 10 9 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 10 25 25 H 0.96994 * 120.00244 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99943 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.47256 * 65.00108 * 12 10 9 28 28 H 1.09006 * 109.46840 * 184.99850 * 12 10 9 29 29 H 0.97000 * 119.99697 * 0.02562 * 13 12 10 30 30 H 1.08994 * 109.47078 * 300.00379 * 16 14 13 31 31 H 1.09004 * 109.46731 * 59.99711 * 16 14 13 32 32 H 1.09003 * 109.47087 * 299.99716 * 18 17 16 33 33 H 1.08998 * 109.47095 * 59.99933 * 18 17 16 34 34 H 1.08995 * 109.47422 * 179.97438 * 19 18 17 35 35 H 1.09002 * 115.54973 * 210.58024 * 22 10 9 36 36 H 1.09001 * 117.49733 * 214.97413 * 23 22 10 37 37 H 1.08995 * 117.49577 * 359.97438 * 23 22 10 38 38 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 39 39 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6568 0.0027 11 1 2.9689 -3.5499 0.5921 12 6 1.1811 -4.7515 0.6133 13 7 0.7344 -4.3337 1.9445 14 6 -0.0546 -5.1454 2.6761 15 8 -0.3945 -6.2217 2.2326 16 6 -0.5145 -4.7154 4.0453 17 8 -1.3337 -5.7379 4.6156 18 6 -1.8253 -5.4282 5.9211 19 6 -2.6845 -6.5871 6.4307 20 9 -3.7626 -6.7857 5.5614 21 9 -1.9109 -7.7513 6.4878 22 6 2.4222 -4.0368 -1.4340 23 6 1.9102 -3.1314 -2.5560 24 6 3.3938 -3.1218 -2.1822 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3880 0.0016 27 1 0.3135 -4.9200 -0.0248 28 1 1.7560 -5.6739 0.6958 29 1 1.0066 -3.4730 2.2994 30 1 0.3528 -4.5461 4.6833 31 1 -1.0900 -3.7934 3.9623 32 1 -0.9854 -5.2739 6.5985 33 1 -2.4278 -4.5209 5.8767 34 1 -3.0592 -6.3511 7.4267 35 1 2.4802 -5.1061 -1.6371 36 1 1.6313 -3.6051 -3.4973 37 1 1.3136 -2.2649 -2.2708 38 1 3.7735 -2.2490 -1.6510 39 1 4.0910 -3.5894 -2.8776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752473938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:58 Heat of formation + Delta-G solvation = -145.075963 kcal Electronic energy + Delta-G solvation = -23361.930367 eV Core-core repulsion = 19362.828000 eV Total energy + Delta-G solvation = -3999.102367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.139 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.03736 -47.07668 -39.56860 -37.97235 -37.32598 -34.48327 -33.29445 -31.18162 -30.56667 -28.70973 -26.93177 -23.69641 -23.15728 -22.54215 -21.53485 -20.27817 -19.13895 -18.06042 -17.65177 -17.62395 -17.13376 -16.36243 -16.19444 -16.12391 -15.21437 -15.11138 -14.69703 -14.45890 -14.00529 -13.90851 -13.58700 -13.42712 -13.26345 -12.97780 -12.82699 -12.51296 -12.12694 -11.94437 -11.31326 -11.23922 -11.16116 -10.91929 -10.88964 -10.52817 -10.16343 -10.04461 -9.77024 -9.63618 -9.42804 -9.19649 -9.02261 -8.66692 -7.11928 -5.88988 -3.19477 2.74151 2.87884 3.34722 3.40803 3.42434 3.54200 3.87800 3.99847 4.23434 4.44956 4.60844 4.74024 4.88634 4.97793 5.06864 5.12444 5.21885 5.33442 5.42225 5.55607 5.71396 5.83223 5.94611 6.01964 6.06292 6.34517 6.42763 6.61911 6.65033 6.71382 6.86866 6.94692 7.29017 7.60960 7.87405 8.28168 8.52778 9.40620 9.94327 10.30758 11.32335 Molecular weight = 292.14amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.003363 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.478664 B = 8324.364831 C = 9419.850332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.192 3.808 11 H 0.057 0.943 12 C 0.121 3.879 13 N -0.710 5.710 14 C 0.511 3.489 15 O -0.531 6.531 16 C 0.044 3.956 17 O -0.352 6.352 18 C 0.006 3.994 19 C 0.273 3.727 20 F -0.198 7.198 21 F -0.200 7.200 22 C -0.178 4.178 23 C -0.162 4.162 24 C -0.176 4.176 25 H 0.256 0.744 26 H 0.386 0.614 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.410 0.590 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 -8.238 11.644 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.081 3.919 11 H 0.075 0.925 12 C -0.003 4.003 13 N -0.364 5.364 14 C 0.296 3.704 15 O -0.408 6.408 16 C -0.036 4.036 17 O -0.270 6.270 18 C -0.073 4.073 19 C 0.219 3.781 20 F -0.180 7.180 21 F -0.181 7.181 22 C -0.200 4.200 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.066 0.934 26 H 0.221 0.779 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.247 0.753 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.097 -9.070 11.227 14.474 hybrid contribution 0.368 1.608 0.078 1.651 sum -0.730 -7.462 11.304 13.565 Atomic orbital electron populations 1.69661 1.05022 1.25771 1.57158 1.24709 0.95408 0.97546 1.02759 0.86268 0.78670 0.84078 0.77614 1.21701 1.21884 1.20807 1.19171 0.90930 0.83798 1.43227 0.91074 1.42495 1.05863 0.99483 1.88118 1.20002 0.94066 0.86021 0.91762 0.92466 1.21599 0.98829 0.97442 0.82432 1.45829 1.50789 1.21742 1.18041 1.20024 0.79117 0.84980 0.86313 1.90716 1.55799 1.22309 1.71951 1.22297 0.95734 0.91750 0.93820 1.88080 1.67905 1.41563 1.29405 1.23744 0.98912 0.97498 0.87101 1.21987 0.80005 0.82466 0.93619 1.93028 1.56358 1.95627 1.72937 1.93017 1.75901 1.51982 1.97190 1.23077 1.05624 0.95390 0.95862 1.22951 0.96985 1.03368 0.96599 1.22811 0.92838 1.02333 1.03367 0.93433 0.77913 0.91576 0.91729 0.75330 0.90035 0.89553 0.90026 0.89850 0.85864 0.89558 0.91280 0.85995 0.88358 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.64 13.06 55.49 0.72 -24.91 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.24 -5.82 8.10 -15.06 -0.12 -5.94 16 8 H 0.07 1.71 6.89 -52.49 -0.36 1.35 16 9 N -0.72 -15.48 3.20 -53.43 -0.17 -15.65 16 10 C 0.19 3.43 2.83 -67.93 -0.19 3.24 16 11 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 12 C 0.12 2.03 5.19 -4.04 -0.02 2.00 16 13 N -0.71 -11.30 5.39 -60.29 -0.32 -11.62 16 14 C 0.51 8.51 7.91 -10.98 -0.09 8.42 16 15 O -0.53 -11.10 16.50 -14.35 -0.24 -11.33 16 16 C 0.04 0.55 6.42 36.01 0.23 0.78 16 17 O -0.35 -4.98 9.76 -55.14 -0.54 -5.51 16 18 C 0.01 0.05 6.16 37.16 0.23 0.28 16 19 C 0.27 2.42 5.63 37.16 0.21 2.63 16 20 F -0.20 -2.46 17.28 2.25 0.04 -2.42 16 21 F -0.20 -2.39 17.28 2.25 0.04 -2.36 16 22 C -0.18 -3.05 5.73 -90.61 -0.52 -3.57 16 23 C -0.16 -3.01 9.69 -26.73 -0.26 -3.27 16 24 C -0.18 -3.06 9.88 -26.73 -0.26 -3.33 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.39 9.21 7.80 -40.82 -0.32 8.89 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.41 6.30 8.14 -40.82 -0.33 5.97 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.12 2.72 6.42 -51.93 -0.33 2.39 16 38 H 0.10 1.88 6.55 -51.93 -0.34 1.54 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -31.83 339.92 -6.73 -38.55 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -5.46 Total: 13.38 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.89 Total: 0.96 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.23 Total: -52.19 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.78 Total: -16.85 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.08 Total: -4.77 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.83 -6.73 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752473938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.522 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds