Wall clock time and date at job start Tue Mar 31 2020 06:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 119.99524 * 2 1 4 4 H 1.48500 * 109.47058 * 269.99852 * 3 2 1 5 5 H 1.48497 * 109.47502 * 29.99824 * 3 2 1 6 6 H 1.48495 * 109.46816 * 150.00047 * 3 2 1 7 7 C 1.38805 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00277 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00296 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46653 * 35.00067 * 10 9 7 12 12 C 1.52995 * 109.47041 * 155.00197 * 10 9 7 13 13 N 1.46503 * 109.47354 * 304.99803 * 12 10 9 14 14 C 1.34774 * 119.99841 * 180.02562 * 13 12 10 15 15 O 1.21275 * 120.00406 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99866 * 180.02562 * 14 13 12 17 17 O 1.42895 * 109.47382 * 179.97438 * 16 14 13 18 18 C 1.42897 * 114.00154 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47310 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.46768 * 299.99836 * 19 18 17 21 21 F 1.39898 * 109.47339 * 59.99742 * 19 18 17 22 22 C 1.53003 * 109.46936 * 275.00238 * 10 9 7 23 23 C 1.53001 * 117.51964 * 356.28241 * 22 10 9 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 10 25 25 H 0.96994 * 120.00244 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99943 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.47256 * 65.00108 * 12 10 9 28 28 H 1.09006 * 109.46840 * 184.99850 * 12 10 9 29 29 H 0.97000 * 119.99697 * 0.02562 * 13 12 10 30 30 H 1.08994 * 109.47078 * 300.00379 * 16 14 13 31 31 H 1.09004 * 109.46731 * 59.99711 * 16 14 13 32 32 H 1.09003 * 109.47087 * 299.99716 * 18 17 16 33 33 H 1.08998 * 109.47095 * 59.99933 * 18 17 16 34 34 H 1.08995 * 109.47422 * 179.97438 * 19 18 17 35 35 H 1.09002 * 115.54973 * 210.58024 * 22 10 9 36 36 H 1.09001 * 117.49733 * 214.97413 * 23 22 10 37 37 H 1.08995 * 117.49577 * 359.97438 * 23 22 10 38 38 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 39 39 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6568 0.0027 11 1 2.9689 -3.5499 0.5921 12 6 1.1811 -4.7515 0.6133 13 7 0.7344 -4.3337 1.9445 14 6 -0.0546 -5.1454 2.6761 15 8 -0.3945 -6.2217 2.2326 16 6 -0.5145 -4.7154 4.0453 17 8 -1.3337 -5.7379 4.6156 18 6 -1.8253 -5.4282 5.9211 19 6 -2.6845 -6.5871 6.4307 20 9 -3.7626 -6.7857 5.5614 21 9 -1.9109 -7.7513 6.4878 22 6 2.4222 -4.0368 -1.4340 23 6 1.9102 -3.1314 -2.5560 24 6 3.3938 -3.1218 -2.1822 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3880 0.0016 27 1 0.3135 -4.9200 -0.0248 28 1 1.7560 -5.6739 0.6958 29 1 1.0066 -3.4730 2.2994 30 1 0.3528 -4.5461 4.6833 31 1 -1.0900 -3.7934 3.9623 32 1 -0.9854 -5.2739 6.5985 33 1 -2.4278 -4.5209 5.8767 34 1 -3.0592 -6.3511 7.4267 35 1 2.4802 -5.1061 -1.6371 36 1 1.6313 -3.6051 -3.4973 37 1 1.3136 -2.2649 -2.2708 38 1 3.7735 -2.2490 -1.6510 39 1 4.0910 -3.5894 -2.8776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752473938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:58 Heat of formation + Delta-G solvation = -166.590102 kcal Electronic energy + Delta-G solvation = -23362.863290 eV Core-core repulsion = 19362.828000 eV Total energy + Delta-G solvation = -4000.035290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.139 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.81746 -47.89008 -40.84970 -39.27369 -38.49815 -35.90966 -35.05473 -32.72777 -31.50544 -30.12428 -28.12544 -25.48999 -24.03933 -23.77701 -22.96869 -21.61075 -20.59202 -19.27726 -18.80525 -18.43042 -18.41159 -17.40703 -17.21835 -17.12163 -16.61483 -16.42502 -16.20658 -15.81312 -15.39641 -15.20207 -14.76083 -14.61863 -14.47796 -14.26822 -13.86954 -13.75111 -13.21199 -12.98085 -12.90547 -12.84475 -12.62703 -12.57222 -12.10895 -11.92907 -11.83933 -11.59719 -11.04662 -10.99108 -10.87691 -10.75440 -10.61416 -10.03620 -8.97668 -7.86638 -5.14535 1.50738 1.53686 1.59035 1.59320 1.78870 2.59974 2.76068 3.06740 3.14626 3.42060 3.48571 3.62070 3.78043 3.88881 4.00130 4.15417 4.18809 4.26675 4.28588 4.35297 4.36224 4.50374 4.56044 4.58705 4.68424 4.94178 4.96593 5.20158 5.25212 5.41715 5.52493 5.67961 5.71079 5.86015 6.33255 6.59506 7.24471 7.42057 8.12049 8.38087 9.35612 Molecular weight = 292.14amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.003363 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.478664 B = 8324.364831 C = 9419.850332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.298 1.298 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.218 4.218 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.195 3.805 11 H 0.064 0.936 12 C 0.129 3.871 13 N -0.705 5.705 14 C 0.505 3.495 15 O -0.581 6.581 16 C 0.050 3.950 17 O -0.395 6.395 18 C -0.003 4.003 19 C 0.259 3.741 20 F -0.224 7.224 21 F -0.222 7.222 22 C -0.171 4.171 23 C -0.175 4.175 24 C -0.167 4.167 25 H 0.247 0.753 26 H 0.374 0.626 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.415 0.585 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.182 0.818 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 -8.419 12.885 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.257 4.257 3 Si 0.787 3.213 4 H -0.226 1.226 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.360 5.360 10 C 0.086 3.914 11 H 0.082 0.918 12 C 0.004 3.996 13 N -0.358 5.358 14 C 0.292 3.708 15 O -0.461 6.461 16 C -0.029 4.029 17 O -0.314 6.314 18 C -0.080 4.080 19 C 0.206 3.794 20 F -0.205 7.205 21 F -0.203 7.203 22 C -0.192 4.192 23 C -0.213 4.213 24 C -0.204 4.204 25 H 0.056 0.944 26 H 0.207 0.793 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.252 0.748 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.198 0.802 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.336 -9.257 12.484 15.545 hybrid contribution -0.029 1.596 -0.307 1.625 sum 0.307 -7.661 12.177 14.390 Atomic orbital electron populations 1.69797 1.06287 1.25546 1.59878 1.25279 0.95941 1.00116 1.04344 0.85398 0.77999 0.81010 0.76865 1.22605 1.22916 1.19435 1.19417 0.91130 0.84496 1.39923 0.90561 1.42542 1.05289 1.00235 1.87935 1.20117 0.93979 0.84726 0.92621 0.91803 1.21465 0.98010 0.97456 0.82669 1.45802 1.50547 1.21779 1.17652 1.20842 0.78122 0.84126 0.87735 1.90686 1.57583 1.24437 1.73370 1.22319 0.97247 0.91641 0.91703 1.88021 1.68515 1.42748 1.32106 1.24126 1.00305 0.98202 0.85353 1.22823 0.79316 0.81550 0.95709 1.92972 1.57635 1.95753 1.74189 1.92966 1.76561 1.53491 1.97326 1.23080 1.04905 0.96642 0.94586 1.22799 0.97661 1.02718 0.98095 1.22819 0.92434 1.01726 1.03395 0.94406 0.79348 0.93332 0.90366 0.74832 0.86525 0.87852 0.86922 0.87597 0.80155 0.86987 0.89438 0.90075 0.90248 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.21 13.06 21.65 0.28 -53.92 16 2 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 3 Si 0.96 42.90 29.55 68.60 2.03 44.93 16 4 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.22 -10.43 8.10 84.03 0.68 -9.75 16 8 H 0.08 3.55 6.89 -2.91 -0.02 3.53 16 9 N -0.72 -30.86 3.20 -322.94 -1.03 -31.89 16 10 C 0.19 6.70 2.83 44.99 0.13 6.83 16 11 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 12 C 0.13 4.18 5.19 86.38 0.45 4.63 16 13 N -0.70 -21.80 5.39 -463.06 -2.50 -24.30 16 14 C 0.51 16.51 7.91 87.66 0.69 17.21 16 15 O -0.58 -24.51 16.50 16.02 0.26 -24.25 16 16 C 0.05 1.16 6.42 71.24 0.46 1.62 16 17 O -0.39 -10.69 9.76 -129.94 -1.27 -11.96 16 18 C 0.00 -0.05 6.16 71.98 0.44 0.40 16 19 C 0.26 4.10 5.63 71.98 0.41 4.51 16 20 F -0.22 -5.44 17.28 44.97 0.78 -4.66 16 21 F -0.22 -5.14 17.28 44.97 0.78 -4.36 16 22 C -0.17 -5.52 5.73 -10.79 -0.06 -5.58 16 23 C -0.18 -6.35 9.69 30.59 0.30 -6.05 16 24 C -0.17 -5.42 9.88 30.60 0.30 -5.11 16 25 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 26 H 0.37 18.07 7.80 -92.70 -0.72 17.34 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.41 12.21 8.14 -92.71 -0.75 11.46 16 30 H 0.12 1.85 8.14 -2.39 -0.02 1.84 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.18 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.11 3.11 8.08 -2.39 -0.02 3.09 16 36 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.08 3.67 6.42 -2.39 -0.02 3.65 16 38 H 0.08 2.89 6.55 -2.39 -0.02 2.88 16 39 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 Total: -1.00 -71.32 339.92 3.20 -68.12 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.39 Total: 36.46 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 4.26 Total: 5.84 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -3.25 Total: -110.11 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.00 Total: -36.21 kcal Atomic # 9 Polarization: -10.58 SS G_CDS: 1.55 Total: -9.03 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -71.32 3.20 -68.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752473938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.468 kcal (2) G-P(sol) polarization free energy of solvation -71.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds