Wall clock time and date at job start Tue Mar 31 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38245 * 119.94494 * 2 1 4 4 C 1.38407 * 120.34052 * 179.97438 * 3 2 1 5 5 C 1.37901 * 120.21897 * 359.78571 * 4 3 2 6 6 C 1.39617 * 119.87840 * 0.48760 * 5 4 3 7 7 C 1.47698 * 120.16831 * 179.76609 * 6 5 4 8 8 O 1.21574 * 119.99566 * 145.45418 * 7 6 5 9 9 N 1.34772 * 120.00199 * 325.45405 * 7 6 5 10 10 C 1.46963 * 120.59328 * 175.02371 * 9 7 6 11 11 C 1.53375 * 108.63326 * 235.20685 * 10 9 7 12 12 N 1.46969 * 108.63554 * 310.57752 * 11 10 9 13 13 C 1.36940 * 120.59058 * 235.22797 * 12 11 10 14 14 H 1.07996 * 120.00043 * 28.59389 * 13 12 11 15 15 C 1.38813 * 119.99366 * 208.59094 * 13 12 11 16 16 N 1.31612 * 120.00587 * 16.96414 * 15 13 12 17 17 Si 1.86801 * 119.99468 * 196.95748 * 15 13 12 18 18 H 1.48496 * 109.47648 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47091 * 120.00680 * 17 15 13 20 20 H 1.48498 * 109.47091 * 239.99955 * 17 15 13 21 21 C 1.46963 * 118.81384 * 55.22655 * 12 11 10 22 22 C 1.46969 * 120.59287 * 355.00479 * 9 7 6 23 23 C 1.38285 * 119.94044 * 180.02562 * 2 1 3 24 24 F 1.35101 * 120.10519 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.46855 * 269.98055 * 1 2 3 26 26 H 1.09003 * 109.46559 * 29.97893 * 1 2 3 27 27 H 1.09002 * 109.47151 * 149.97562 * 1 2 3 28 28 H 1.08004 * 119.82677 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.88978 * 180.02562 * 4 3 2 30 30 H 1.08005 * 120.06485 * 180.23516 * 5 4 3 31 31 H 1.08990 * 109.60927 * 354.95135 * 10 9 7 32 32 H 1.09001 * 109.60858 * 115.46249 * 10 9 7 33 33 H 1.08998 * 109.61004 * 70.32367 * 11 10 9 34 34 H 1.09003 * 109.60929 * 190.83119 * 11 10 9 35 35 H 0.96997 * 120.00755 * 180.02562 * 16 15 13 36 36 H 1.08993 * 109.61431 * 185.02975 * 21 12 11 37 37 H 1.08998 * 109.74968 * 64.60123 * 21 12 11 38 38 H 1.08998 * 109.61088 * 244.53767 * 22 9 7 39 39 H 1.09003 * 109.61139 * 5.04702 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1979 0.0000 4 6 3.5812 1.2075 0.0005 5 6 4.2834 0.0207 0.0055 6 6 3.5958 -1.1944 -0.0002 7 6 4.3416 -2.4693 -0.0002 8 8 3.8974 -3.4332 0.5928 9 7 5.5144 -2.5640 -0.6573 10 6 6.3202 -3.7904 -0.5764 11 6 7.7279 -3.4208 -0.0928 12 7 8.2238 -2.2996 -0.9035 13 6 9.4153 -2.3961 -1.5715 14 1 9.7720 -3.3600 -1.9031 15 6 10.1644 -1.2548 -1.8225 16 7 9.9230 -0.1483 -1.1520 17 14 11.5156 -1.2895 -3.1120 18 1 11.5853 -2.6426 -3.7198 19 1 11.2183 -0.2880 -4.1675 20 1 12.8168 -0.9650 -2.4744 21 6 7.4180 -1.0733 -0.9844 22 6 6.0102 -1.4429 -1.4680 23 6 2.1972 -1.1983 -0.0005 24 9 1.5227 -2.3688 -0.0016 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6534 2.1311 -0.0004 29 1 4.1129 2.1475 0.0009 30 1 5.3634 0.0310 0.0098 31 1 5.8614 -4.4836 0.1285 32 1 6.3815 -4.2534 -1.5613 33 1 7.6887 -3.1249 0.9555 34 1 8.3914 -4.2778 -0.2090 35 1 10.4462 0.6493 -1.3277 36 1 7.8766 -0.3799 -1.6893 37 1 7.3564 -0.6075 -0.0008 38 1 6.0495 -1.7387 -2.5163 39 1 5.3467 -0.5859 -1.3518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127314708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:15 Heat of formation + Delta-G solvation = -9.849390 kcal Electronic energy + Delta-G solvation = -23762.693202 eV Core-core repulsion = 20200.223924 eV Total energy + Delta-G solvation = -3562.469278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.83670 -40.23211 -38.47544 -36.82567 -34.08774 -33.15669 -31.44466 -30.69296 -30.18960 -27.16286 -27.09651 -24.44931 -23.26191 -22.68285 -21.83454 -20.65944 -18.88772 -17.52695 -17.25611 -16.63142 -16.18153 -15.84074 -15.44521 -15.01858 -14.74400 -14.45283 -14.26239 -13.59565 -13.57639 -13.52473 -13.44018 -13.20937 -12.92476 -12.60242 -12.53754 -11.98301 -11.83033 -11.55489 -11.45653 -11.11403 -10.86917 -10.75270 -10.53036 -10.29810 -10.08456 -9.90026 -9.52637 -8.93242 -8.68332 -8.64699 -8.27838 -6.77138 -5.91772 -3.36180 0.75892 1.05945 2.91343 3.29940 3.30293 3.38968 3.41198 3.62497 4.15302 4.39452 4.50950 4.57837 4.78090 4.99552 5.07187 5.22938 5.28411 5.32525 5.38496 5.54346 5.72711 5.78691 5.81344 5.86156 5.94724 6.02066 6.09307 6.11881 6.18140 6.24911 6.26997 6.39120 6.71457 6.73753 6.87462 7.11890 7.35465 7.67680 7.82346 8.29909 8.46239 9.06091 9.68236 10.25169 11.16217 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.025429 B = 0.004369 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.822404 B = 6407.759491 C = 7225.322642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.135 4.135 3 C -0.074 4.074 4 C -0.134 4.134 5 C -0.069 4.069 6 C -0.158 4.158 7 C 0.552 3.448 8 O -0.544 6.544 9 N -0.587 5.587 10 C 0.096 3.904 11 C 0.131 3.869 12 N -0.590 5.590 13 C -0.255 4.255 14 H 0.069 0.931 15 C 0.004 3.996 16 N -0.903 5.903 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.157 3.843 22 C 0.053 3.947 23 C 0.147 3.853 24 F -0.122 7.122 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.255 0.745 36 H 0.102 0.898 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.001 4.230 0.594 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.136 4.136 3 C -0.093 4.093 4 C -0.152 4.152 5 C -0.088 4.088 6 C -0.162 4.162 7 C 0.340 3.660 8 O -0.424 6.424 9 N -0.319 5.319 10 C -0.027 4.027 11 C 0.004 3.996 12 N -0.313 5.313 13 C -0.385 4.385 14 H 0.086 0.914 15 C -0.194 4.194 16 N -0.547 5.547 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.216 1.216 21 C 0.030 3.970 22 C -0.071 4.071 23 C 0.126 3.874 24 F -0.100 7.100 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.174 0.826 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.117 3.793 0.874 15.610 hybrid contribution 0.754 -0.048 -0.690 1.023 sum -14.363 3.745 0.184 14.845 Atomic orbital electron populations 1.20705 0.89883 1.03322 1.02855 1.19873 0.97153 0.91627 1.04946 1.21073 0.94241 0.96883 0.97057 1.21205 0.94023 0.98503 1.01506 1.21749 1.01699 0.90577 0.94731 1.20086 0.92296 0.95342 1.08433 1.18042 0.81060 0.87086 0.79792 1.90760 1.68041 1.38305 1.45266 1.47913 1.19332 1.17259 1.47347 1.22267 0.92941 0.85787 1.01739 1.21328 0.91803 0.92591 0.93871 1.43974 1.20757 1.12184 1.54357 1.19262 0.96276 0.94107 1.28822 0.91356 1.25066 0.97827 0.97082 0.99464 1.70002 1.42301 1.02115 1.40276 0.86199 0.81455 0.77681 0.81295 1.20177 1.21448 1.21634 1.21186 0.86021 0.89999 0.99759 1.23378 0.99666 0.88919 0.95087 1.17482 0.88450 0.81368 1.00056 1.91532 1.79665 1.45722 1.93085 0.90794 0.90884 0.91175 0.84784 0.84454 0.82559 0.89852 0.91722 0.95728 0.91289 0.93492 0.87979 0.95797 0.91690 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.83 36.01 0.35 -0.62 16 2 C -0.14 -1.57 5.88 -104.60 -0.62 -2.19 16 3 C -0.07 -0.73 9.69 -39.52 -0.38 -1.12 16 4 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 16 5 C -0.07 -0.96 7.38 -39.19 -0.29 -1.25 16 6 C -0.16 -2.56 5.43 -104.91 -0.57 -3.13 16 7 C 0.55 10.65 7.30 -12.40 -0.09 10.56 16 8 O -0.54 -11.97 15.48 5.30 0.08 -11.88 16 9 N -0.59 -11.11 2.95 -173.65 -0.51 -11.62 16 10 C 0.10 1.82 6.58 -3.60 -0.02 1.80 16 11 C 0.13 2.73 6.67 -3.59 -0.02 2.70 16 12 N -0.59 -14.11 2.97 -172.03 -0.51 -14.62 16 13 C -0.26 -6.67 9.57 -15.06 -0.14 -6.81 16 14 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 15 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 16 N -0.90 -24.64 11.19 55.49 0.62 -24.02 16 17 Si 0.90 20.71 29.59 -169.99 -5.03 15.68 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.16 3.43 5.21 -3.60 -0.02 3.41 16 22 C 0.05 0.95 5.70 -3.59 -0.02 0.93 16 23 C 0.15 2.23 7.18 -38.96 -0.28 1.95 16 24 F -0.12 -2.05 15.30 2.25 0.03 -2.02 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.07 0.65 7.64 -51.93 -0.40 0.25 16 28 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.16 2.27 4.90 -52.48 -0.26 2.01 16 31 H 0.08 1.54 7.02 -51.93 -0.36 1.18 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 35 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.10 2.45 6.00 -51.93 -0.31 2.14 16 37 H 0.02 0.55 7.44 -51.93 -0.39 0.16 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.43 3.56 -51.93 -0.19 1.24 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -31.00 317.63 -7.93 -38.94 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.82 Total: 0.34 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.59 Total: 4.41 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.40 Total: -50.26 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.03 Total: -2.02 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.00 -7.93 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127314708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.086 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds