Wall clock time and date at job start Tue Mar 31 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38245 * 119.94494 * 2 1 4 4 C 1.38407 * 120.34052 * 179.97438 * 3 2 1 5 5 C 1.37901 * 120.21897 * 359.78571 * 4 3 2 6 6 C 1.39617 * 119.87840 * 0.48760 * 5 4 3 7 7 C 1.47698 * 120.16831 * 179.76609 * 6 5 4 8 8 O 1.21574 * 119.99566 * 145.45418 * 7 6 5 9 9 N 1.34772 * 120.00199 * 325.45405 * 7 6 5 10 10 C 1.46963 * 120.59328 * 175.02371 * 9 7 6 11 11 C 1.53375 * 108.63326 * 235.20685 * 10 9 7 12 12 N 1.46969 * 108.63554 * 310.57752 * 11 10 9 13 13 C 1.36940 * 120.59058 * 235.22797 * 12 11 10 14 14 H 1.07996 * 120.00043 * 28.59389 * 13 12 11 15 15 C 1.38813 * 119.99366 * 208.59094 * 13 12 11 16 16 N 1.31612 * 120.00587 * 16.96414 * 15 13 12 17 17 Si 1.86801 * 119.99468 * 196.95748 * 15 13 12 18 18 H 1.48496 * 109.47648 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47091 * 120.00680 * 17 15 13 20 20 H 1.48498 * 109.47091 * 239.99955 * 17 15 13 21 21 C 1.46963 * 118.81384 * 55.22655 * 12 11 10 22 22 C 1.46969 * 120.59287 * 355.00479 * 9 7 6 23 23 C 1.38285 * 119.94044 * 180.02562 * 2 1 3 24 24 F 1.35101 * 120.10519 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.46855 * 269.98055 * 1 2 3 26 26 H 1.09003 * 109.46559 * 29.97893 * 1 2 3 27 27 H 1.09002 * 109.47151 * 149.97562 * 1 2 3 28 28 H 1.08004 * 119.82677 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.88978 * 180.02562 * 4 3 2 30 30 H 1.08005 * 120.06485 * 180.23516 * 5 4 3 31 31 H 1.08990 * 109.60927 * 354.95135 * 10 9 7 32 32 H 1.09001 * 109.60858 * 115.46249 * 10 9 7 33 33 H 1.08998 * 109.61004 * 70.32367 * 11 10 9 34 34 H 1.09003 * 109.60929 * 190.83119 * 11 10 9 35 35 H 0.96997 * 120.00755 * 180.02562 * 16 15 13 36 36 H 1.08993 * 109.61431 * 185.02975 * 21 12 11 37 37 H 1.08998 * 109.74968 * 64.60123 * 21 12 11 38 38 H 1.08998 * 109.61088 * 244.53767 * 22 9 7 39 39 H 1.09003 * 109.61139 * 5.04702 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1979 0.0000 4 6 3.5812 1.2075 0.0005 5 6 4.2834 0.0207 0.0055 6 6 3.5958 -1.1944 -0.0002 7 6 4.3416 -2.4693 -0.0002 8 8 3.8974 -3.4332 0.5928 9 7 5.5144 -2.5640 -0.6573 10 6 6.3202 -3.7904 -0.5764 11 6 7.7279 -3.4208 -0.0928 12 7 8.2238 -2.2996 -0.9035 13 6 9.4153 -2.3961 -1.5715 14 1 9.7720 -3.3600 -1.9031 15 6 10.1644 -1.2548 -1.8225 16 7 9.9230 -0.1483 -1.1520 17 14 11.5156 -1.2895 -3.1120 18 1 11.5853 -2.6426 -3.7198 19 1 11.2183 -0.2880 -4.1675 20 1 12.8168 -0.9650 -2.4744 21 6 7.4180 -1.0733 -0.9844 22 6 6.0102 -1.4429 -1.4680 23 6 2.1972 -1.1983 -0.0005 24 9 1.5227 -2.3688 -0.0016 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6534 2.1311 -0.0004 29 1 4.1129 2.1475 0.0009 30 1 5.3634 0.0310 0.0098 31 1 5.8614 -4.4836 0.1285 32 1 6.3815 -4.2534 -1.5613 33 1 7.6887 -3.1249 0.9555 34 1 8.3914 -4.2778 -0.2090 35 1 10.4462 0.6493 -1.3277 36 1 7.8766 -0.3799 -1.6893 37 1 7.3564 -0.6075 -0.0008 38 1 6.0495 -1.7387 -2.5163 39 1 5.3467 -0.5859 -1.3518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127314708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:14 Heat of formation + Delta-G solvation = -27.747935 kcal Electronic energy + Delta-G solvation = -23763.469341 eV Core-core repulsion = 20200.223924 eV Total energy + Delta-G solvation = -3563.245417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.00376 -41.59389 -39.62153 -38.50402 -35.76369 -34.32774 -33.05780 -32.03481 -31.62286 -28.84539 -28.00663 -26.03216 -24.78995 -24.19949 -22.81780 -22.20639 -20.46325 -18.84322 -18.62553 -17.83333 -17.78669 -17.18038 -16.81777 -16.53079 -16.14984 -15.90248 -15.59904 -15.28814 -15.20335 -14.93184 -14.41701 -14.30487 -14.26412 -14.00987 -13.46725 -13.32549 -13.20475 -12.80718 -12.70749 -12.64266 -12.52320 -12.26735 -12.20140 -12.05105 -11.82104 -11.70206 -10.97847 -10.61869 -10.09261 -9.81940 -9.65293 -8.68278 -7.90263 -5.38374 -0.30225 0.08881 1.48056 1.51580 1.60090 1.61100 1.88003 2.50423 2.53789 3.12555 3.25021 3.28443 3.54994 3.65084 3.91127 4.09984 4.14499 4.16580 4.22145 4.28899 4.43820 4.54138 4.61253 4.65707 4.74586 4.76076 4.78766 4.92405 4.99738 5.06509 5.17672 5.19973 5.26580 5.32312 5.45886 5.55769 5.63955 5.81091 6.31114 6.34827 6.96152 7.09854 7.75684 8.29973 9.15631 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.025429 B = 0.004369 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.822404 B = 6407.759491 C = 7225.322642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.128 4.128 3 C -0.056 4.056 4 C -0.121 4.121 5 C -0.082 4.082 6 C -0.184 4.184 7 C 0.549 3.451 8 O -0.581 6.581 9 N -0.592 5.592 10 C 0.104 3.896 11 C 0.133 3.867 12 N -0.608 5.608 13 C -0.269 4.269 14 H 0.068 0.932 15 C -0.040 4.040 16 N -0.929 5.929 17 Si 0.967 3.033 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.294 1.294 21 C 0.166 3.834 22 C 0.068 3.932 23 C 0.117 3.883 24 F -0.141 7.141 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.181 0.819 29 H 0.170 0.830 30 H 0.144 0.856 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.254 0.746 36 H 0.081 0.919 37 H 0.009 0.991 38 H 0.065 0.935 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 6.350 -0.129 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.129 4.129 3 C -0.073 4.073 4 C -0.138 4.138 5 C -0.100 4.100 6 C -0.188 4.188 7 C 0.338 3.662 8 O -0.463 6.463 9 N -0.322 5.322 10 C -0.020 4.020 11 C 0.007 3.993 12 N -0.331 5.331 13 C -0.399 4.399 14 H 0.085 0.915 15 C -0.236 4.236 16 N -0.575 5.575 17 Si 0.795 3.205 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.221 1.221 21 C 0.040 3.960 22 C -0.054 4.054 23 C 0.097 3.903 24 F -0.119 7.119 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.199 0.801 29 H 0.187 0.813 30 H 0.162 0.838 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.030 0.970 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.027 0.973 38 H 0.083 0.917 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.612 5.908 0.145 17.632 hybrid contribution 1.159 -0.651 -0.392 1.386 sum -15.453 5.257 -0.247 16.324 Atomic orbital electron populations 1.20818 0.87708 1.04431 1.03846 1.20300 0.98759 0.90763 1.03040 1.21610 0.93899 0.97860 0.93972 1.21603 0.94743 0.98364 0.99128 1.21672 1.01185 0.91016 0.96134 1.19958 0.92832 0.94468 1.11513 1.18603 0.80877 0.87997 0.78681 1.90720 1.68899 1.39975 1.46666 1.47987 1.19508 1.17269 1.47468 1.22115 0.91723 0.86117 1.02037 1.21356 0.93058 0.92038 0.92849 1.44237 1.20774 1.13261 1.54838 1.19533 0.97123 0.94248 1.28964 0.91475 1.25746 0.99961 0.96817 1.01117 1.70127 1.43333 1.02522 1.41480 0.85221 0.78552 0.77781 0.78905 1.19485 1.21195 1.22082 1.21008 0.87616 0.89002 0.98390 1.23213 0.97919 0.89795 0.94517 1.17886 0.88294 0.82081 1.02025 1.91476 1.79885 1.47064 1.93498 0.89747 0.87740 0.92155 0.80147 0.81251 0.83833 0.89672 0.90991 0.96980 0.90531 0.93697 0.90120 0.97342 0.91681 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.83 71.24 0.70 -0.88 16 2 C -0.13 -2.59 5.88 -19.85 -0.12 -2.71 16 3 C -0.06 -0.83 9.69 22.31 0.22 -0.61 16 4 C -0.12 -2.15 10.03 22.23 0.22 -1.93 16 5 C -0.08 -2.15 7.38 22.52 0.17 -1.98 16 6 C -0.18 -5.95 5.43 -20.05 -0.11 -6.06 16 7 C 0.55 21.67 7.30 86.74 0.63 22.30 16 8 O -0.58 -26.45 15.48 -3.95 -0.06 -26.51 16 9 N -0.59 -22.79 2.95 -821.58 -2.42 -25.21 16 10 C 0.10 4.00 6.58 86.42 0.57 4.57 16 11 C 0.13 5.68 6.67 86.42 0.58 6.26 16 12 N -0.61 -29.61 2.97 -698.20 -2.07 -31.68 16 13 C -0.27 -14.19 9.57 84.03 0.80 -13.38 16 14 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 15 C -0.04 -2.12 4.92 84.86 0.42 -1.71 16 16 N -0.93 -51.36 11.19 21.65 0.24 -51.12 16 17 Si 0.97 42.68 29.59 68.60 2.03 44.71 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 21 C 0.17 7.41 5.21 86.42 0.45 7.86 16 22 C 0.07 2.48 5.70 86.42 0.49 2.97 16 23 C 0.12 3.49 7.18 22.67 0.16 3.65 16 24 F -0.14 -4.83 15.30 44.97 0.69 -4.15 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.10 0.84 8.08 -2.39 -0.02 0.82 16 27 H 0.06 0.99 7.64 -2.39 -0.02 0.97 16 28 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 30 H 0.14 4.12 4.90 -2.91 -0.01 4.10 16 31 H 0.08 3.25 7.02 -2.39 -0.02 3.23 16 32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 3.08 7.93 -2.39 -0.02 3.06 16 35 H 0.25 13.50 8.31 -92.71 -0.77 12.72 16 36 H 0.08 3.96 6.00 -2.39 -0.01 3.94 16 37 H 0.01 0.40 7.44 -2.39 -0.02 0.38 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.12 3.70 3.56 -2.39 -0.01 3.70 16 Total: -1.00 -69.19 317.63 4.67 -64.52 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.07 Total: 11.08 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 5.19 Total: 18.35 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -4.25 Total: -108.01 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.06 Total: -26.51 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.69 Total: -4.15 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -69.19 4.67 -64.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127314708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.776 kcal (2) G-P(sol) polarization free energy of solvation -69.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds