Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00136 * 2 1 4 4 H 1.48499 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46845 * 299.99657 * 3 2 1 6 6 H 1.48499 * 109.47293 * 59.99467 * 3 2 1 7 7 C 1.38808 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00623 * 180.02562 * 7 2 1 9 9 N 1.36946 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00047 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.50052 * 324.93428 * 10 9 7 12 12 C 1.53039 * 109.52106 * 204.85041 * 10 9 7 13 13 C 1.53037 * 109.53951 * 178.66816 * 12 10 9 14 14 C 1.52756 * 109.38460 * 61.24112 * 13 12 10 15 15 N 1.46928 * 109.00997 * 305.59090 * 14 13 12 16 16 C 1.34778 * 120.63295 * 233.58213 * 15 14 13 17 17 O 1.21553 * 119.99978 * 183.57605 * 16 15 14 18 18 C 1.47851 * 119.99707 * 3.57698 * 16 15 14 19 19 C 1.39600 * 120.13080 * 309.48676 * 18 16 15 20 20 C 1.37939 * 119.90066 * 180.27673 * 19 18 16 21 21 C 1.38345 * 120.17782 * 359.47994 * 20 19 18 22 22 C 1.38554 * 120.26487 * 0.22417 * 21 20 19 23 23 F 1.35098 * 119.95494 * 180.02562 * 22 21 20 24 24 C 1.38209 * 120.09307 * 0.05210 * 22 21 20 25 25 C 1.46928 * 118.73670 * 53.30619 * 15 14 13 26 26 H 0.96996 * 119.99877 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99053 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.46550 * 298.69189 * 12 10 9 29 29 H 1.09004 * 109.46283 * 58.64840 * 12 10 9 30 30 H 1.08999 * 109.49974 * 181.32235 * 13 12 10 31 31 H 1.09011 * 109.49809 * 301.38686 * 13 12 10 32 32 H 1.09000 * 109.51716 * 185.70945 * 14 13 12 33 33 H 1.09001 * 109.43441 * 65.42434 * 14 13 12 34 34 H 1.07994 * 120.05117 * 0.02562 * 19 18 16 35 35 H 1.08002 * 119.91275 * 179.75276 * 20 19 18 36 36 H 1.07997 * 119.87052 * 180.25154 * 21 20 19 37 37 H 1.08003 * 120.09087 * 179.97438 * 24 22 21 38 38 H 1.09002 * 109.58767 * 66.43370 * 25 15 14 39 39 H 1.08996 * 109.58559 * 186.85607 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9683 -3.5514 -0.5897 12 6 1.1803 -4.7541 -0.6056 13 6 1.9571 -6.0723 -0.6363 14 6 2.3232 -6.4784 0.7900 15 7 3.0406 -5.3697 1.4341 16 6 4.2451 -5.5704 2.0045 17 8 4.7991 -4.6610 2.5906 18 6 4.8926 -6.8967 1.9172 19 6 4.1833 -8.0471 2.2669 20 6 4.7938 -9.2816 2.1891 21 6 6.1035 -9.3836 1.7552 22 6 6.8122 -8.2471 1.4005 23 9 8.0906 -8.3540 0.9771 24 6 6.2132 -7.0041 1.4796 25 6 2.4227 -4.0367 1.4391 26 1 -0.4850 0.8400 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 0.2818 -4.8761 -0.0008 29 1 0.8990 -4.4747 -1.6210 30 1 1.3398 -6.8479 -1.0896 31 1 2.8681 -5.9443 -1.2211 32 1 2.9620 -7.3612 0.7647 33 1 1.4138 -6.6989 1.3491 34 1 3.1595 -7.9704 2.6017 35 1 4.2466 -10.1714 2.4634 36 1 6.5753 -10.3531 1.6923 37 1 6.7657 -6.1181 1.2035 38 1 1.5216 -4.0539 2.0522 39 1 3.1272 -3.3089 1.8419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998433708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = -38.471656 kcal Electronic energy + Delta-G solvation = -23074.169839 eV Core-core repulsion = 19510.459406 eV Total energy + Delta-G solvation = -3563.710433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.16161 -40.53837 -38.57557 -37.25463 -34.55500 -32.47402 -31.61067 -31.23942 -30.76533 -28.23176 -25.78851 -24.10405 -23.43177 -22.97811 -21.88741 -20.52738 -19.30558 -17.85078 -17.12396 -16.84073 -16.64321 -16.17559 -15.83842 -15.59042 -15.14733 -14.56218 -14.23337 -14.21232 -13.96216 -13.62234 -13.43859 -13.27416 -12.78694 -12.65726 -12.46333 -12.32928 -12.14996 -11.68893 -11.34765 -11.06342 -10.86829 -10.68400 -10.62035 -10.19703 -9.91168 -9.85540 -9.66852 -9.39682 -9.10752 -8.99811 -8.41686 -7.02736 -5.80870 -3.10899 0.57644 0.82973 2.64117 2.99754 3.35519 3.43580 3.50213 3.52467 3.93413 4.28501 4.46433 4.56506 4.65534 4.70336 4.90037 4.96416 5.06743 5.19232 5.34722 5.45372 5.50550 5.58735 5.64970 5.71008 5.76767 5.83686 5.90158 5.94025 5.99927 6.13011 6.17685 6.31191 6.44173 6.46735 6.66917 6.78609 6.95888 7.53738 7.70442 8.22882 8.37384 9.49336 10.02670 10.37906 11.41390 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.003668 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.621987 B = 7631.461965 C = 8288.433268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.596 5.596 16 C 0.552 3.448 17 O -0.530 6.530 18 C -0.086 4.086 19 C -0.104 4.104 20 C -0.095 4.095 21 C -0.140 4.140 22 C 0.096 3.904 23 F -0.137 7.137 24 C -0.108 4.108 25 C 0.092 3.908 26 H 0.255 0.745 27 H 0.386 0.614 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.064 0.936 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.713 -22.843 1.864 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.027 4.027 15 N -0.328 5.328 16 C 0.338 3.662 17 O -0.407 6.407 18 C -0.089 4.089 19 C -0.122 4.122 20 C -0.113 4.113 21 C -0.159 4.159 22 C 0.077 3.923 23 F -0.115 7.115 24 C -0.127 4.127 25 C -0.032 4.032 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.083 0.917 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.150 -22.158 2.142 23.382 hybrid contribution 0.312 0.903 -0.042 0.956 sum 7.462 -21.255 2.100 22.625 Atomic orbital electron populations 1.69668 1.05132 1.25699 1.57462 1.24745 0.95515 0.97770 1.02570 0.86121 0.78983 0.83960 0.77192 1.20411 1.21813 1.21752 1.19321 0.91148 0.83954 1.43032 0.90972 1.42384 1.05821 0.99564 1.88057 1.20489 0.94982 0.86523 0.92309 0.93107 1.21831 0.98676 0.94065 1.01906 1.21813 1.00961 0.98280 0.95867 1.21978 0.97022 0.89599 0.94080 1.48226 1.18236 1.11480 1.54898 1.18248 0.81192 0.87198 0.79531 1.90826 1.63767 1.43655 1.42465 1.19854 0.94049 0.94131 1.00903 1.21428 1.00308 0.91365 0.99127 1.20961 0.93957 0.97855 0.98516 1.21300 0.95498 0.97955 1.01144 1.17533 0.79824 0.94209 1.00722 1.91523 1.35530 1.96894 1.87581 1.21156 0.94424 0.97132 1.00009 1.22877 0.97913 0.81161 1.01287 0.93483 0.78030 0.91967 0.91332 0.90869 0.91592 0.89451 0.91142 0.84418 0.84301 0.84390 0.83888 0.91740 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.58 16 9 N -0.72 -17.62 5.13 -53.31 -0.27 -17.90 16 10 C 0.17 3.28 2.92 -67.81 -0.20 3.08 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -1.92 5.36 -26.69 -0.14 -2.06 16 13 C -0.13 -1.50 6.06 -26.84 -0.16 -1.66 16 14 C 0.10 1.05 5.34 -3.93 -0.02 1.03 16 15 N -0.60 -8.94 2.98 -174.14 -0.52 -9.46 16 16 C 0.55 8.83 7.24 -12.33 -0.09 8.74 16 17 O -0.53 -10.77 16.47 5.32 0.09 -10.69 16 18 C -0.09 -1.05 5.00 -104.97 -0.53 -1.58 16 19 C -0.10 -0.92 7.36 -39.18 -0.29 -1.21 16 20 C -0.09 -0.66 10.03 -39.65 -0.40 -1.06 16 21 C -0.14 -1.11 10.02 -39.43 -0.40 -1.50 16 22 C 0.10 1.00 7.29 -39.48 -0.29 0.72 16 23 F -0.14 -1.52 17.26 2.25 0.04 -1.48 16 24 C -0.11 -1.29 9.72 -39.11 -0.38 -1.67 16 25 C 0.09 1.70 6.01 -3.71 -0.02 1.68 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 27 H 0.39 9.94 7.80 -40.82 -0.32 9.62 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.09 0.78 4.55 -51.93 -0.24 0.54 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.14 1.02 7.06 -52.49 -0.37 0.65 16 35 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 2.01 7.02 -51.93 -0.36 1.64 16 LS Contribution 327.23 15.07 4.93 4.93 Total: -1.00 -32.48 327.23 -8.25 -40.73 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.06 Total: 6.19 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -3.16 Total: -2.79 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.07 Total: -54.48 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.48 -8.25 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998433708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.260 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds