Wall clock time and date at job start Tue Mar 31 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00136 * 2 1 4 4 H 1.48499 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46845 * 299.99657 * 3 2 1 6 6 H 1.48499 * 109.47293 * 59.99467 * 3 2 1 7 7 C 1.38808 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00623 * 180.02562 * 7 2 1 9 9 N 1.36946 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00047 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.50052 * 324.93428 * 10 9 7 12 12 C 1.53039 * 109.52106 * 204.85041 * 10 9 7 13 13 C 1.53037 * 109.53951 * 178.66816 * 12 10 9 14 14 C 1.52756 * 109.38460 * 61.24112 * 13 12 10 15 15 N 1.46928 * 109.00997 * 305.59090 * 14 13 12 16 16 C 1.34778 * 120.63295 * 233.58213 * 15 14 13 17 17 O 1.21553 * 119.99978 * 183.57605 * 16 15 14 18 18 C 1.47851 * 119.99707 * 3.57698 * 16 15 14 19 19 C 1.39600 * 120.13080 * 309.48676 * 18 16 15 20 20 C 1.37939 * 119.90066 * 180.27673 * 19 18 16 21 21 C 1.38345 * 120.17782 * 359.47994 * 20 19 18 22 22 C 1.38554 * 120.26487 * 0.22417 * 21 20 19 23 23 F 1.35098 * 119.95494 * 180.02562 * 22 21 20 24 24 C 1.38209 * 120.09307 * 0.05210 * 22 21 20 25 25 C 1.46928 * 118.73670 * 53.30619 * 15 14 13 26 26 H 0.96996 * 119.99877 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99053 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.46550 * 298.69189 * 12 10 9 29 29 H 1.09004 * 109.46283 * 58.64840 * 12 10 9 30 30 H 1.08999 * 109.49974 * 181.32235 * 13 12 10 31 31 H 1.09011 * 109.49809 * 301.38686 * 13 12 10 32 32 H 1.09000 * 109.51716 * 185.70945 * 14 13 12 33 33 H 1.09001 * 109.43441 * 65.42434 * 14 13 12 34 34 H 1.07994 * 120.05117 * 0.02562 * 19 18 16 35 35 H 1.08002 * 119.91275 * 179.75276 * 20 19 18 36 36 H 1.07997 * 119.87052 * 180.25154 * 21 20 19 37 37 H 1.08003 * 120.09087 * 179.97438 * 24 22 21 38 38 H 1.09002 * 109.58767 * 66.43370 * 25 15 14 39 39 H 1.08996 * 109.58559 * 186.85607 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9683 -3.5514 -0.5897 12 6 1.1803 -4.7541 -0.6056 13 6 1.9571 -6.0723 -0.6363 14 6 2.3232 -6.4784 0.7900 15 7 3.0406 -5.3697 1.4341 16 6 4.2451 -5.5704 2.0045 17 8 4.7991 -4.6610 2.5906 18 6 4.8926 -6.8967 1.9172 19 6 4.1833 -8.0471 2.2669 20 6 4.7938 -9.2816 2.1891 21 6 6.1035 -9.3836 1.7552 22 6 6.8122 -8.2471 1.4005 23 9 8.0906 -8.3540 0.9771 24 6 6.2132 -7.0041 1.4796 25 6 2.4227 -4.0367 1.4391 26 1 -0.4850 0.8400 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 0.2818 -4.8761 -0.0008 29 1 0.8990 -4.4747 -1.6210 30 1 1.3398 -6.8479 -1.0896 31 1 2.8681 -5.9443 -1.2211 32 1 2.9620 -7.3612 0.7647 33 1 1.4138 -6.6989 1.3491 34 1 3.1595 -7.9704 2.6017 35 1 4.2466 -10.1714 2.4634 36 1 6.5753 -10.3531 1.6923 37 1 6.7657 -6.1181 1.2035 38 1 1.5216 -4.0539 2.0522 39 1 3.1272 -3.3089 1.8419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998433708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:22 Heat of formation + Delta-G solvation = -59.464391 kcal Electronic energy + Delta-G solvation = -23075.080152 eV Core-core repulsion = 19510.459406 eV Total energy + Delta-G solvation = -3564.620746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.97014 -41.66207 -39.53839 -38.59155 -36.27440 -34.04779 -32.80432 -32.37934 -31.69320 -29.85715 -26.97887 -25.92186 -24.46528 -23.79762 -23.18905 -21.82642 -20.51250 -19.19135 -18.86338 -17.78508 -17.46411 -17.13669 -16.84426 -16.69234 -16.59897 -16.07814 -15.60794 -15.45909 -15.17737 -14.99712 -14.72495 -14.25231 -14.10107 -13.89252 -13.74157 -13.37236 -13.09844 -12.93376 -12.91487 -12.52038 -12.47062 -12.19523 -12.01224 -11.91299 -11.69661 -11.37257 -11.18452 -10.98985 -10.18508 -9.82338 -9.73939 -9.04962 -8.01345 -5.30539 -0.20786 0.10077 1.41950 1.43832 1.48385 1.53755 1.88088 2.51124 2.52796 3.13395 3.31834 3.39245 3.72841 3.76165 3.94870 3.99782 4.02177 4.06761 4.20125 4.26892 4.31517 4.36204 4.59751 4.62879 4.73341 4.84748 4.88480 4.95804 5.01969 5.04159 5.13020 5.19274 5.24274 5.36525 5.40953 5.44147 5.53246 5.78024 6.21812 6.33532 6.99179 7.28676 8.00244 8.25944 9.21397 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.023611 B = 0.003668 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.621987 B = 7631.461965 C = 8288.433268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.065 4.065 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.063 0.937 9 N -0.729 5.729 10 C 0.167 3.833 11 H 0.028 0.972 12 C -0.118 4.118 13 C -0.122 4.122 14 C 0.091 3.909 15 N -0.593 5.593 16 C 0.547 3.453 17 O -0.590 6.590 18 C -0.105 4.105 19 C -0.095 4.095 20 C -0.075 4.075 21 C -0.124 4.124 22 C 0.082 3.918 23 F -0.146 7.146 24 C -0.129 4.129 25 C 0.106 3.894 26 H 0.254 0.746 27 H 0.379 0.621 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.160 0.840 35 H 0.186 0.814 36 H 0.170 0.830 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 -26.963 1.884 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.081 0.919 9 N -0.369 5.369 10 C 0.057 3.943 11 H 0.046 0.954 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.030 4.030 15 N -0.324 5.324 16 C 0.336 3.664 17 O -0.471 6.471 18 C -0.108 4.108 19 C -0.113 4.113 20 C -0.092 4.092 21 C -0.142 4.142 22 C 0.063 3.937 23 F -0.125 7.125 24 C -0.148 4.148 25 C -0.019 4.019 26 H 0.063 0.937 27 H 0.211 0.789 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.178 0.822 35 H 0.203 0.797 36 H 0.187 0.813 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.610 -26.349 2.140 27.249 hybrid contribution 0.531 2.064 -0.043 2.131 sum 7.142 -24.285 2.098 25.400 Atomic orbital electron populations 1.69786 1.06252 1.26160 1.58996 1.25454 0.96385 1.00698 1.03257 0.85183 0.77966 0.80244 0.77037 1.19991 1.21336 1.21730 1.19538 0.90994 0.85542 1.41801 0.91865 1.42502 1.05569 1.00531 1.88267 1.20654 0.94674 0.86251 0.92744 0.95375 1.21745 0.98533 0.94312 1.01036 1.21815 1.00726 0.97017 0.96524 1.22380 0.98228 0.88791 0.93555 1.48242 1.18307 1.11017 1.54830 1.18940 0.80888 0.88278 0.78305 1.90784 1.65161 1.46061 1.45096 1.19529 0.94286 0.93006 1.04001 1.21710 1.01109 0.90718 0.97808 1.21453 0.93375 0.98379 0.96021 1.21737 0.95688 0.98076 0.98707 1.17702 0.79788 0.94485 1.01730 1.91499 1.36205 1.96895 1.87853 1.21051 0.94725 0.97439 1.01634 1.22299 0.96857 0.82693 1.00067 0.93747 0.78850 0.90990 0.92034 0.86661 0.92408 0.86492 0.88465 0.82201 0.79673 0.81252 0.86309 0.91578 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.82 13.06 21.65 0.28 -58.53 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.97 47.71 29.55 68.60 2.03 49.74 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 7 C -0.25 -14.24 9.93 84.03 0.83 -13.41 16 8 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -37.14 5.13 -322.58 -1.65 -38.79 16 10 C 0.17 6.70 2.92 45.07 0.13 6.83 16 11 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 12 C -0.12 -3.45 5.36 30.62 0.16 -3.28 16 13 C -0.12 -2.43 6.06 30.53 0.19 -2.25 16 14 C 0.09 1.68 5.34 86.22 0.46 2.14 16 15 N -0.59 -17.68 2.98 -823.13 -2.45 -20.13 16 16 C 0.55 18.02 7.24 86.79 0.63 18.65 16 17 O -0.59 -25.83 16.47 -3.88 -0.06 -25.89 16 18 C -0.11 -2.48 5.00 -20.09 -0.10 -2.58 16 19 C -0.10 -1.30 7.36 22.53 0.17 -1.14 16 20 C -0.07 -0.61 10.03 22.22 0.22 -0.39 16 21 C -0.12 -1.40 10.02 22.37 0.22 -1.17 16 22 C 0.08 1.58 7.29 22.34 0.16 1.75 16 23 F -0.15 -3.15 17.26 44.97 0.78 -2.37 16 24 C -0.13 -3.13 9.72 22.57 0.22 -2.91 16 25 C 0.11 4.12 6.01 86.36 0.52 4.64 16 26 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 27 H 0.38 20.12 7.80 -92.71 -0.72 19.39 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 32 H 0.12 1.54 4.55 -2.39 -0.01 1.53 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.16 1.50 7.06 -2.91 -0.02 1.48 16 35 H 0.19 -0.05 8.06 -2.91 -0.02 -0.07 16 36 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.12 3.32 8.06 -2.91 -0.02 3.29 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.05 2.24 7.02 -2.39 -0.02 2.22 16 Total: -1.00 -76.99 327.23 3.55 -73.44 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.35 Total: 18.99 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 4.28 Total: 3.54 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -3.82 Total: -117.46 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.06 Total: -25.89 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.37 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -76.99 3.55 -73.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998433708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.980 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds