Wall clock time and date at job start Tue Mar 31 2020 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38340 * 119.86275 * 2 1 4 4 C 1.37941 * 120.17577 * 179.72553 * 3 2 1 5 5 C 1.39603 * 119.90208 * 0.48605 * 4 3 2 6 6 C 1.47843 * 120.13232 * 179.79185 * 5 4 3 7 7 O 1.21555 * 119.99914 * 179.72527 * 6 5 4 8 8 N 1.34778 * 120.00240 * 359.72271 * 6 5 4 9 9 C 1.46501 * 120.00102 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.88655 * 31.12111 * 9 8 6 11 11 C 1.55160 * 111.00374 * 155.00258 * 9 8 6 12 12 C 1.54330 * 102.94295 * 82.57227 * 11 9 8 13 13 N 1.47022 * 107.27028 * 22.19363 * 12 11 9 14 14 C 1.36932 * 125.64931 * 181.02631 * 13 12 11 15 15 H 1.08000 * 120.00004 * 189.81967 * 14 13 12 16 16 C 1.38810 * 120.00208 * 9.81570 * 14 13 12 17 17 N 1.31614 * 120.00304 * 208.94358 * 16 14 13 18 18 Si 1.86797 * 119.99812 * 28.94072 * 16 14 13 19 19 H 1.48495 * 109.47497 * 275.30292 * 18 16 14 20 20 H 1.48502 * 109.47083 * 35.30088 * 18 16 14 21 21 H 1.48501 * 109.47290 * 155.30015 * 18 16 14 22 22 C 1.47427 * 108.70226 * 1.28562 * 13 12 11 23 23 C 1.39527 * 119.72985 * 359.51851 * 5 4 3 24 24 C 1.38207 * 119.82971 * 0.24959 * 23 5 4 25 25 F 1.35103 * 119.95428 * 179.97438 * 24 23 5 26 26 H 1.08998 * 109.47322 * 270.01330 * 1 2 3 27 27 H 1.08994 * 109.47533 * 30.01825 * 1 2 3 28 28 H 1.09007 * 109.47258 * 150.01837 * 1 2 3 29 29 H 1.08006 * 119.91400 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.05599 * 180.27925 * 4 3 2 31 31 H 0.97000 * 119.99615 * 0.02562 * 8 6 5 32 32 H 1.08997 * 110.71705 * 324.21452 * 11 9 8 33 33 H 1.08994 * 110.72115 * 200.93712 * 11 9 8 34 34 H 1.09005 * 109.88315 * 262.78055 * 12 11 9 35 35 H 1.08998 * 110.01091 * 141.67921 * 12 11 9 36 36 H 0.97003 * 119.99936 * 4.81989 * 17 16 14 37 37 H 1.09003 * 110.36699 * 94.48441 * 22 13 12 38 38 H 1.09010 * 110.36605 * 216.80488 * 22 13 12 39 39 H 1.08005 * 120.08303 * 180.27162 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1997 0.0000 4 6 3.5752 1.2073 0.0057 5 6 4.2778 0.0009 0.0012 6 6 5.7562 0.0031 0.0027 7 8 6.3655 -1.0487 0.0038 8 7 6.4285 1.1713 0.0027 9 6 7.8935 1.1734 0.0047 10 1 8.2840 0.3017 -0.5204 11 6 8.4485 2.4865 -0.6077 12 6 8.3879 3.4733 0.5774 13 7 8.3728 2.6735 1.8109 14 6 8.3024 3.1719 3.0844 15 1 8.4562 2.5175 3.9296 16 6 8.0335 4.5182 3.2889 17 7 8.4987 5.1272 4.3590 18 14 7.0113 5.4659 2.0454 19 1 7.8881 5.9474 0.9479 20 1 5.9620 4.5761 1.4863 21 1 6.3710 6.6274 2.7132 22 6 8.4522 1.2463 1.4500 23 6 3.5790 -1.2068 0.0012 24 6 2.1970 -1.2014 0.0003 25 9 1.5178 -2.3693 -0.0002 26 1 -0.3634 0.0002 1.0276 27 1 -0.3634 0.8897 -0.5141 28 1 -0.3634 -0.8902 -0.5136 29 1 1.6522 2.1330 -0.0004 30 1 4.1110 2.1450 0.0103 31 1 5.9422 2.0106 0.0021 32 1 7.8153 2.8279 -1.4265 33 1 9.4763 2.3508 -0.9443 34 1 7.4803 4.0737 0.5137 35 1 9.2633 4.1225 0.5673 36 1 9.0870 4.6547 4.9686 37 1 9.4872 0.9053 1.4768 38 1 7.8377 0.6497 2.1244 39 1 4.1168 -2.1434 0.0022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015166310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:21 Heat of formation + Delta-G solvation = -28.016416 kcal Electronic energy + Delta-G solvation = -23123.371573 eV Core-core repulsion = 19560.114514 eV Total energy + Delta-G solvation = -3563.257060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.11074 -40.30161 -38.74521 -37.44846 -34.04516 -33.19298 -32.13452 -30.78628 -29.57412 -28.38091 -27.29199 -24.07728 -23.09961 -22.85433 -20.98769 -20.71410 -19.85028 -18.44318 -17.41983 -16.85286 -16.27844 -15.99088 -15.92173 -15.56411 -15.21705 -14.72451 -14.40236 -14.12107 -13.85588 -13.68727 -13.45010 -13.36215 -12.93805 -12.72214 -12.62118 -12.04578 -11.99591 -11.76008 -11.47687 -11.19919 -11.12956 -11.06591 -10.92872 -10.34375 -9.92150 -9.66016 -9.22921 -9.22604 -9.00001 -8.81540 -8.47070 -7.10331 -6.39869 -3.20160 0.50818 0.93613 2.69611 3.16436 3.36020 3.41614 3.59789 3.62960 4.00974 4.36487 4.44229 4.58116 4.68944 4.77374 4.90734 4.94749 4.99650 5.23735 5.25567 5.26856 5.38251 5.40890 5.48550 5.67677 5.73124 5.75352 5.81577 5.98937 6.01849 6.03171 6.09636 6.20151 6.43753 6.53202 6.55946 6.68981 6.81217 7.59501 7.69685 8.27156 8.31418 8.99564 9.54999 10.21977 11.09435 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.004430 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.498398 B = 6319.332717 C = 7116.519266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.098 4.098 3 C -0.099 4.099 4 C -0.089 4.089 5 C -0.106 4.106 6 C 0.559 3.441 7 O -0.540 6.540 8 N -0.700 5.700 9 C 0.124 3.876 10 H 0.099 0.901 11 C -0.137 4.137 12 C 0.116 3.884 13 N -0.607 5.607 14 C -0.331 4.331 15 H 0.077 0.923 16 C -0.014 4.014 17 N -0.913 5.913 18 Si 1.057 2.943 19 H -0.294 1.294 20 H -0.297 1.297 21 H -0.299 1.299 22 C 0.124 3.876 23 C -0.091 4.091 24 C 0.086 3.914 25 F -0.136 7.136 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.401 0.599 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.043 0.957 36 H 0.265 0.735 37 H 0.037 0.963 38 H 0.049 0.951 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.264 -8.064 -13.141 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.099 4.099 3 C -0.117 4.117 4 C -0.108 4.108 5 C -0.110 4.110 6 C 0.346 3.654 7 O -0.418 6.418 8 N -0.350 5.350 9 C 0.019 3.981 10 H 0.117 0.883 11 C -0.175 4.175 12 C -0.009 4.009 13 N -0.335 5.335 14 C -0.457 4.457 15 H 0.095 0.905 16 C -0.215 4.215 17 N -0.552 5.552 18 Si 0.891 3.109 19 H -0.222 1.222 20 H -0.225 1.225 21 H -0.227 1.227 22 C -0.003 4.003 23 C -0.111 4.111 24 C 0.067 3.933 25 F -0.114 7.114 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.237 0.763 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.508 -7.345 -13.318 20.342 hybrid contribution 0.346 -1.206 0.406 1.318 sum -13.163 -8.551 -12.913 20.325 Atomic orbital electron populations 1.20793 0.89846 1.03552 1.03185 1.20147 0.97297 0.91913 1.00534 1.20891 0.93703 0.97360 0.99752 1.21462 0.94546 0.97600 0.97189 1.19797 0.93518 0.93400 1.04237 1.18062 0.86605 0.84095 0.76639 1.90760 1.69577 1.31184 1.50306 1.45760 1.07549 1.08203 1.73535 1.22280 0.78748 0.98616 0.98450 0.88298 1.22916 1.01681 0.95009 0.97939 1.21654 0.99048 0.94020 0.86191 1.44812 1.87285 0.99641 1.01768 1.20016 1.48847 0.95043 0.81828 0.90535 1.25750 1.01006 0.93473 1.01317 1.70875 1.32028 1.36796 1.15541 0.83903 0.77127 0.75139 0.74769 1.22179 1.22512 1.22733 1.22073 0.97833 0.87663 0.92698 1.21189 0.91873 0.99608 0.98426 1.17339 0.89605 0.81191 1.05157 1.91493 1.79897 1.46002 1.94046 0.90359 0.90617 0.90996 0.84216 0.84663 0.76288 0.90813 0.89633 0.95879 0.93945 0.92534 0.94521 0.93316 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.83 36.01 0.35 -0.51 16 2 C -0.10 -0.98 5.89 -104.47 -0.62 -1.60 16 3 C -0.10 -0.96 9.68 -39.65 -0.38 -1.35 16 4 C -0.09 -1.02 9.54 -39.18 -0.37 -1.39 16 5 C -0.11 -1.44 5.87 -104.98 -0.62 -2.06 16 6 C 0.56 8.97 7.77 -12.33 -0.10 8.88 16 7 O -0.54 -10.12 15.99 5.32 0.09 -10.04 16 8 N -0.70 -10.94 5.15 -52.55 -0.27 -11.21 16 9 C 0.12 2.04 3.43 -65.66 -0.23 1.82 16 10 H 0.10 1.54 7.54 -51.93 -0.39 1.15 16 11 C -0.14 -2.08 6.55 -24.89 -0.16 -2.25 16 12 C 0.12 2.37 4.99 -3.06 -0.02 2.35 16 13 N -0.61 -14.44 3.29 -169.92 -0.56 -14.99 16 14 C -0.33 -9.33 10.41 -15.06 -0.16 -9.48 16 15 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 16 C -0.01 -0.41 5.41 -17.43 -0.09 -0.51 16 17 N -0.91 -28.15 13.70 55.49 0.76 -27.39 16 18 Si 1.06 25.53 24.74 -169.99 -4.21 21.32 16 19 H -0.29 -6.68 6.74 56.52 0.38 -6.29 16 20 H -0.30 -6.54 6.87 56.52 0.39 -6.15 16 21 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 22 C 0.12 2.52 6.95 -2.41 -0.02 2.51 16 23 C -0.09 -1.19 9.57 -39.11 -0.37 -1.56 16 24 C 0.09 1.02 7.23 -39.48 -0.29 0.73 16 25 F -0.14 -1.61 16.46 2.25 0.04 -1.58 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.07 0.52 7.63 -51.93 -0.40 0.12 16 29 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 30 H 0.14 1.41 6.40 -52.49 -0.34 1.07 16 31 H 0.40 5.83 6.70 -40.82 -0.27 5.55 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.02 0.49 3.71 -51.93 -0.19 0.30 16 35 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 36 H 0.26 8.11 8.73 -40.82 -0.36 7.76 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 39 H 0.15 1.94 7.65 -52.48 -0.40 1.54 16 LS Contribution 324.41 15.07 4.89 4.89 Total: -1.00 -32.80 324.41 -7.30 -40.10 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.97 Total: 3.33 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -3.06 Total: -4.42 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.07 Total: -53.60 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -4.21 Total: 21.32 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.80 -7.30 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015166310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.082 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds