Wall clock time and date at job start Tue Mar 31 2020 07:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34208 * 126.56892 * 2 1 4 4 N 1.36916 * 109.93362 * 179.97438 * 3 2 1 5 5 H 0.96992 * 124.97840 * 180.02562 * 4 3 2 6 6 C 1.37431 * 110.04559 * 0.02562 * 4 3 2 7 7 N 1.32729 * 133.01047 * 179.71925 * 6 4 3 8 8 C 1.31414 * 121.85726 * 179.85187 * 7 6 4 9 9 C 1.39748 * 121.41333 * 0.46623 * 8 7 6 10 10 C 1.48397 * 120.42785 * 179.75097 * 9 8 7 11 11 C 1.39351 * 120.11979 * 179.74133 * 10 9 8 12 12 C 1.38003 * 119.87466 * 179.71761 * 11 10 9 13 13 C 1.38340 * 120.12140 * 0.56018 * 12 11 10 14 14 C 1.38295 * 120.24359 * 359.71979 * 13 12 11 15 15 C 1.50705 * 119.94164 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47061 * 269.97661 * 15 14 13 17 17 H 1.07998 * 119.99933 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00073 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99715 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00247 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47182 * 59.99598 * 20 18 16 22 22 H 1.48504 * 109.47412 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46821 * 299.99594 * 20 18 16 24 24 C 1.38047 * 120.11930 * 359.97438 * 14 13 12 25 25 C 1.39325 * 119.14413 * 359.76528 * 9 8 7 26 26 C 1.39517 * 117.96198 * 0.02562 * 25 9 8 27 27 H 1.09002 * 109.47182 * 270.02811 * 1 2 3 28 28 H 1.08996 * 109.47295 * 30.02888 * 1 2 3 29 29 H 1.09000 * 109.46499 * 150.03099 * 1 2 3 30 30 H 1.07999 * 125.03528 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.29883 * 180.25387 * 8 7 6 32 32 H 1.07998 * 120.06066 * 0.02562 * 11 10 9 33 33 H 1.08007 * 119.93646 * 180.27630 * 12 11 10 34 34 H 1.08002 * 119.87819 * 179.69354 * 13 12 11 35 35 H 1.09006 * 109.46651 * 29.97422 * 15 14 13 36 36 H 1.08997 * 109.46835 * 149.97567 * 15 14 13 37 37 H 0.97001 * 119.99412 * 180.02562 * 19 18 16 38 38 H 1.08002 * 120.05535 * 179.97438 * 24 14 13 39 39 H 1.07998 * 121.01547 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3066 1.0779 0.0000 4 7 3.6185 0.6859 0.0006 5 1 4.3788 1.2882 0.0010 6 6 3.7002 -0.6860 0.0004 7 7 4.7229 -1.5320 -0.0040 8 6 4.5459 -2.8342 -0.0002 9 6 3.2660 -3.3952 -0.0009 10 6 3.0914 -4.8689 -0.0021 11 6 1.8122 -5.4215 0.0026 12 6 1.6556 -6.7926 -0.0044 13 6 2.7658 -7.6181 -0.0044 14 6 4.0376 -7.0751 -0.0032 15 6 5.2422 -7.9807 -0.0037 16 6 5.6434 -8.2838 1.4169 17 1 5.0825 -7.8624 2.2380 18 6 6.7265 -9.0990 1.6684 19 7 7.4092 -9.6125 0.6684 20 14 7.2234 -9.4753 3.4293 21 1 6.0987 -10.1473 4.1282 22 1 8.4105 -10.3676 3.4288 23 1 7.5567 -8.2095 4.1308 24 6 4.2058 -5.7049 -0.0025 25 6 2.1560 -2.5532 -0.0009 26 6 2.3796 -1.1760 -0.0006 27 1 -0.3634 0.0005 1.0277 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3632 -0.8903 -0.5134 30 1 1.9658 2.1027 -0.0004 31 1 5.4079 -3.4847 0.0002 32 1 0.9449 -4.7780 0.0066 33 1 0.6646 -7.2220 -0.0053 34 1 2.6387 -8.6906 -0.0049 35 1 4.9978 -8.9100 -0.5184 36 1 6.0675 -7.4872 -0.5170 37 1 8.1710 -10.1864 0.8453 38 1 5.1995 -5.2819 -0.0012 39 1 1.1532 -2.9543 -0.0019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240957310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:08 Heat of formation + Delta-G solvation = 78.149715 kcal Electronic energy + Delta-G solvation = -21328.915786 eV Core-core repulsion = 18201.031660 eV Total energy + Delta-G solvation = -3127.884126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57358 -39.03428 -37.50759 -33.99307 -33.29078 -32.12972 -31.12460 -30.56683 -28.27311 -27.13963 -26.61824 -24.09764 -23.23628 -22.95545 -21.17768 -19.94144 -19.36396 -18.20954 -16.79155 -16.49865 -16.20854 -15.43927 -15.19554 -14.79636 -14.45787 -14.20887 -13.55280 -13.39989 -13.33446 -13.23549 -12.84894 -12.76798 -12.50600 -12.35579 -12.17923 -11.77594 -11.64664 -11.29273 -11.05363 -10.79124 -10.50102 -10.35775 -10.31251 -9.58031 -9.45952 -9.29151 -8.97106 -8.41819 -8.09284 -7.94970 -7.45218 -6.04184 -4.08077 0.89670 1.08219 2.08541 2.32784 2.51638 2.70457 3.32993 3.37003 3.40459 3.92550 4.39546 4.41568 4.55686 4.61307 4.67934 4.91676 5.01045 5.06544 5.23749 5.30439 5.41589 5.48154 5.50295 5.58104 5.64494 5.77841 5.90547 6.00489 6.06703 6.08711 6.33818 6.40617 6.44812 6.60522 6.72393 6.91036 7.05474 7.13376 7.16367 7.22849 7.49445 7.68284 7.82874 7.91716 8.04446 8.31400 8.97045 9.55922 11.05693 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021682 B = 0.003350 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.083802 B = 8356.334550 C = 9110.554301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.166 4.166 3 C 0.053 3.947 4 N -0.583 5.583 5 H 0.418 0.582 6 C 0.278 3.722 7 N -0.498 5.498 8 C 0.152 3.848 9 C -0.104 4.104 10 C -0.047 4.047 11 C -0.138 4.138 12 C -0.121 4.121 13 C -0.119 4.119 14 C -0.030 4.030 15 C 0.047 3.953 16 C -0.513 4.513 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.112 4.112 25 C -0.028 4.028 26 C -0.147 4.147 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.175 0.825 31 H 0.168 0.832 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.263 0.737 38 H 0.121 0.879 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.073 19.307 -2.706 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.174 4.174 3 C -0.072 4.072 4 N -0.190 5.190 5 H 0.255 0.745 6 C 0.046 3.954 7 N -0.210 5.210 8 C -0.014 4.014 9 C -0.108 4.108 10 C -0.048 4.048 11 C -0.156 4.156 12 C -0.139 4.139 13 C -0.137 4.137 14 C -0.030 4.030 15 C 0.010 3.990 16 C -0.551 4.551 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.130 4.130 25 C -0.054 4.054 26 C -0.154 4.154 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.192 0.808 31 H 0.185 0.815 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.007 19.723 -2.755 23.254 hybrid contribution -0.033 -0.293 1.028 1.069 sum -12.040 19.430 -1.728 22.923 Atomic orbital electron populations 1.20109 0.89281 1.02316 1.01798 1.20233 0.95407 0.90551 1.11204 1.21577 0.81528 0.99177 1.04966 1.41456 1.07911 1.04007 1.65595 0.74465 1.18465 0.90406 0.84961 1.01590 1.66474 1.33501 1.03661 1.17330 1.22747 0.96722 0.88528 0.93390 1.19571 0.93758 0.93463 1.03984 1.18445 0.93944 0.89873 1.02536 1.20869 0.95638 0.94977 1.04156 1.20955 0.98328 0.93331 1.01248 1.21184 0.92137 0.99808 1.00597 1.20626 0.96572 0.94096 0.91737 1.18371 0.89444 0.93369 0.97777 1.21018 1.13042 1.29600 0.91445 0.92476 1.25003 0.96257 0.95782 0.97217 1.69950 1.19644 1.32950 1.30742 0.86603 0.77971 0.78339 0.84822 1.20163 1.21244 1.20131 1.21116 0.97484 0.93247 1.01104 1.20971 0.99018 0.90285 0.95124 1.19683 0.93587 0.93655 1.08464 0.91743 0.91811 0.91711 0.80835 0.81474 0.86997 0.86829 0.86323 0.95221 0.95217 0.92771 0.86069 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.42 36.01 0.38 -0.21 16 2 C -0.17 -1.73 6.32 -102.74 -0.65 -2.38 16 3 C 0.05 0.45 11.74 -16.70 -0.20 0.26 16 4 N -0.58 -5.98 6.05 -12.11 -0.07 -6.06 16 5 H 0.42 3.16 8.96 -40.82 -0.37 2.80 16 6 C 0.28 3.95 8.42 -155.59 -1.31 2.64 16 7 N -0.50 -7.86 10.37 -12.00 -0.12 -7.99 16 8 C 0.15 2.40 10.57 -17.17 -0.18 2.22 16 9 C -0.10 -1.63 5.89 -104.74 -0.62 -2.24 16 10 C -0.05 -0.80 5.88 -104.90 -0.62 -1.42 16 11 C -0.14 -2.16 9.44 -39.25 -0.37 -2.53 16 12 C -0.12 -1.94 10.03 -39.63 -0.40 -2.34 16 13 C -0.12 -2.27 9.69 -39.52 -0.38 -2.65 16 14 C -0.03 -0.65 5.06 -104.67 -0.53 -1.18 16 15 C 0.05 1.20 5.10 -29.03 -0.15 1.05 16 16 C -0.51 -14.24 9.09 -34.44 -0.31 -14.55 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.11 -2.15 9.09 -39.25 -0.36 -2.51 16 25 C -0.03 -0.39 9.58 -38.70 -0.37 -0.76 16 26 C -0.15 -2.00 6.36 -105.13 -0.67 -2.67 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.17 2.48 6.19 -52.49 -0.33 2.16 16 32 H 0.11 1.42 6.27 -52.49 -0.33 1.09 16 33 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 35 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.12 2.24 6.22 -52.49 -0.33 1.92 16 39 H 0.14 1.57 6.32 -52.49 -0.33 1.24 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -32.30 333.48 -10.88 -43.18 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.60 Total: 2.55 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -6.83 Total: -27.70 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.54 Total: -39.57 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.30 -10.88 -43.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240957310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.329 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds