Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47242 * 2 1 4 4 C 1.52997 * 109.46930 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47170 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00457 * 269.99940 * 5 4 3 7 7 C 1.50698 * 109.46780 * 270.00005 * 6 5 4 8 8 H 1.07996 * 120.00217 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99529 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00417 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99860 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47313 * 90.00353 * 11 9 7 13 13 H 1.48505 * 109.47222 * 210.00357 * 11 9 7 14 14 H 1.48501 * 109.47239 * 330.00092 * 11 9 7 15 15 C 1.34780 * 120.00015 * 89.99695 * 5 4 3 16 16 S 1.71195 * 120.00338 * 180.02562 * 15 5 4 17 17 N 1.34783 * 119.99713 * 0.02562 * 15 5 4 18 18 C 1.39889 * 119.99642 * 185.52337 * 17 15 5 19 19 C 1.38882 * 120.06961 * 221.86239 * 18 17 15 20 20 C 1.38114 * 119.92693 * 179.97438 * 19 18 17 21 21 C 1.38283 * 120.07125 * 359.97438 * 20 19 18 22 22 C 1.38280 * 120.14452 * 0.03882 * 21 20 19 23 23 C 1.38112 * 120.07334 * 359.95746 * 22 21 20 24 24 H 1.08995 * 109.47591 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47040 * 300.00414 * 1 2 3 26 26 H 1.09005 * 109.47280 * 59.99931 * 1 2 3 27 27 H 1.09000 * 109.47040 * 239.99586 * 2 1 3 28 28 H 1.08999 * 109.46859 * 119.99928 * 2 1 3 29 29 H 1.08993 * 109.47087 * 59.99711 * 3 2 1 30 30 H 1.08999 * 109.47135 * 299.99759 * 3 2 1 31 31 H 1.08993 * 109.47630 * 59.99850 * 4 3 2 32 32 H 1.09005 * 109.47277 * 299.99876 * 4 3 2 33 33 H 1.09000 * 109.46614 * 29.99562 * 6 5 4 34 34 H 1.08998 * 109.47340 * 149.99784 * 6 5 4 35 35 H 0.97001 * 120.00652 * 179.97438 * 10 9 7 36 36 H 0.96994 * 120.00323 * 5.52673 * 17 15 5 37 37 H 1.07993 * 120.03857 * 359.70473 * 19 18 17 38 38 H 1.08000 * 119.96408 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.92662 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.96414 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.03736 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.3022 3.5139 -1.2703 7 6 5.7252 3.2769 -1.7057 8 1 6.3825 2.6729 -1.0978 9 6 6.1881 3.8312 -2.8802 10 7 5.3879 4.5672 -3.6202 11 14 7.9523 3.5380 -3.4197 12 1 8.0160 2.3165 -4.2618 13 1 8.4307 4.7051 -4.2036 14 1 8.8129 3.3595 -2.2227 15 6 4.2835 3.4593 1.1657 16 16 4.8537 5.0736 1.1651 17 7 4.0598 2.8241 2.3332 18 6 4.1818 3.5182 3.5416 19 6 4.8009 2.9171 4.6298 20 6 4.9203 3.6053 5.8214 21 6 4.4247 4.8916 5.9313 22 6 3.8075 5.4927 4.8498 23 6 3.6849 4.8101 3.6554 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8891 33 1 3.6210 3.1296 -2.0295 34 1 4.1353 4.5832 -1.1402 35 1 5.7136 4.9575 -4.4464 36 1 3.8142 1.8858 2.3355 37 1 5.1847 1.9112 4.5458 38 1 5.4013 3.1383 6.6681 39 1 4.5190 5.4274 6.8643 40 1 3.4211 6.4973 4.9390 41 1 3.2024 5.2801 2.8112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196477607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = 39.962935 kcal Electronic energy + Delta-G solvation = -20977.299821 eV Core-core repulsion = 17983.203743 eV Total energy + Delta-G solvation = -2994.096078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.95207 -38.37545 -35.63315 -34.58112 -32.59547 -30.77349 -29.68913 -29.42889 -27.04816 -24.77836 -23.53987 -22.64730 -21.75140 -21.37002 -20.43675 -18.15594 -17.51220 -16.54430 -16.13668 -15.57778 -15.17983 -14.89471 -14.60807 -14.37840 -13.93793 -13.68076 -13.39496 -13.19455 -12.95131 -12.68542 -12.47695 -11.99160 -11.65145 -11.45288 -11.37418 -11.28268 -11.19110 -10.98405 -10.89480 -10.72025 -10.66853 -10.29638 -10.17150 -9.86852 -9.04222 -8.76840 -8.47313 -7.87631 -6.96544 -6.21625 -6.08028 -4.12004 1.33812 1.65023 2.18353 2.63914 3.27580 3.29461 3.37663 3.43082 3.68893 4.02987 4.43059 4.74835 4.79804 4.96145 5.04412 5.07266 5.12543 5.28093 5.31168 5.43732 5.50790 5.57108 5.64763 5.67144 5.71147 5.81987 5.85175 6.01591 6.10269 6.14912 6.23951 6.36718 6.50495 6.64428 6.71986 6.81603 7.13289 7.19553 7.43919 7.53640 7.86186 7.89957 8.10430 8.86212 9.51097 11.00461 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.005726 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.836693 B = 4888.561823 C = 6716.599352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.091 3.909 5 N -0.531 5.531 6 C 0.237 3.763 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.069 3.931 10 N -0.890 5.890 11 Si 0.899 3.101 12 H -0.282 1.282 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.552 3.448 16 S -0.630 6.630 17 N -0.654 5.654 18 C 0.147 3.853 19 C -0.135 4.135 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.116 4.116 23 C -0.071 4.071 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.264 0.736 36 H 0.398 0.602 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 -8.897 13.992 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.176 4.176 4 C -0.036 4.036 5 N -0.234 5.234 6 C 0.119 3.881 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.134 4.134 10 N -0.528 5.528 11 Si 0.727 3.273 12 H -0.208 1.208 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.195 3.805 16 S -0.495 6.495 17 N -0.284 5.284 18 C 0.053 3.947 19 C -0.156 4.156 20 C -0.139 4.139 21 C -0.145 4.145 22 C -0.136 4.136 23 C -0.094 4.094 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.237 0.763 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.111 -7.765 13.558 17.604 hybrid contribution 0.805 -1.513 -0.475 1.779 sum -7.306 -9.278 13.083 17.625 Atomic orbital electron populations 1.21752 0.95640 1.01473 1.02006 1.21454 0.96109 0.96122 1.02202 1.22055 0.94793 0.97459 1.03336 1.21872 0.94289 0.83785 1.03615 1.47931 1.56439 1.12432 1.06595 1.20003 0.97384 0.95685 0.75043 1.21110 0.96029 1.32548 1.06256 0.92617 1.24812 0.97762 0.94612 0.96233 1.69911 1.35701 1.32955 1.14255 0.86478 0.84685 0.77595 0.78578 1.20813 1.20945 1.19836 1.22321 0.82551 0.94465 0.81193 1.93139 1.64420 0.98916 1.93013 1.42372 1.69834 1.13093 1.03112 1.17402 0.99417 0.93826 0.84019 1.20833 1.00409 1.00832 0.93545 1.20764 1.01168 0.95068 0.96934 1.21082 0.99522 0.95249 0.98689 1.20947 1.00392 0.99899 0.92350 1.21449 0.97316 0.93116 0.97488 0.92783 0.92848 0.92514 0.91453 0.92122 0.91991 0.90519 0.88168 0.91799 0.94316 0.90306 0.92602 0.76258 0.86426 0.86225 0.86462 0.85964 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.14 5.93 -26.73 -0.16 -1.30 16 3 C -0.14 -1.66 5.54 -26.73 -0.15 -1.81 16 4 C 0.09 1.30 5.22 -4.04 -0.02 1.28 16 5 N -0.53 -10.40 2.46 -177.09 -0.43 -10.83 16 6 C 0.24 5.83 4.92 -5.19 -0.03 5.80 16 7 C -0.52 -14.21 9.39 -34.44 -0.32 -14.53 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 10 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 11 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 15 C 0.55 11.01 7.46 -86.91 -0.65 10.37 16 16 S -0.63 -15.40 24.45 -107.50 -2.63 -18.03 16 17 N -0.65 -10.20 5.20 -11.40 -0.06 -10.26 16 18 C 0.15 2.27 5.91 -83.70 -0.49 1.78 16 19 C -0.13 -1.76 9.97 -39.39 -0.39 -2.15 16 20 C -0.12 -1.41 10.04 -39.61 -0.40 -1.81 16 21 C -0.13 -1.50 10.04 -39.55 -0.40 -1.90 16 22 C -0.12 -1.57 10.04 -39.61 -0.40 -1.97 16 23 C -0.07 -1.14 7.85 -39.39 -0.31 -1.45 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.50 8.07 -51.93 -0.42 1.08 16 32 H 0.06 0.75 6.29 -51.93 -0.33 0.43 16 33 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.08 2.21 6.58 -51.93 -0.34 1.87 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.40 4.93 6.52 -40.82 -0.27 4.66 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.14 2.59 6.27 -49.85 -0.31 2.27 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -32.61 351.09 -11.84 -44.45 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.28 Total: 4.49 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.44 Total: -6.82 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.24 Total: -46.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -15.40 SS G_CDS: -2.63 Total: -18.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.61 -11.84 -44.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196477607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.410 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds