Wall clock time and date at job start Tue Mar 31 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47342 * 2 1 4 4 C 1.53007 * 109.47194 * 239.99816 * 2 1 3 5 5 N 1.46898 * 109.46764 * 65.00211 * 4 2 1 6 6 C 1.46906 * 110.99888 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46897 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47317 * 55.00605 * 7 6 5 9 9 C 1.47200 * 109.47506 * 294.99833 * 7 6 5 10 10 N 5.62774 * 64.42909 * 272.23673 * 2 1 3 11 11 C 1.53009 * 109.46984 * 175.00052 * 7 6 5 12 12 C 1.50697 * 109.47152 * 185.00255 * 11 7 6 13 13 H 1.08002 * 120.00031 * 359.97438 * 12 11 7 14 14 C 1.37878 * 119.99823 * 179.97438 * 12 11 7 15 15 N 1.31518 * 120.00042 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99950 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47133 * 60.00269 * 16 14 12 18 18 H 1.48501 * 109.46813 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46826 * 299.99658 * 16 14 12 20 20 C 1.53002 * 109.47136 * 120.00210 * 2 1 3 21 21 C 1.50704 * 109.46906 * 294.99861 * 20 2 1 22 22 C 1.33389 * 125.19988 * 89.71629 * 21 20 2 23 23 C 1.38424 * 114.91874 * 179.85776 * 22 21 20 24 24 C 1.33394 * 114.92013 * 0.43464 * 23 22 21 25 25 S 1.75881 * 125.20137 * 270.02672 * 21 20 2 26 26 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46901 * 300.00429 * 1 2 3 28 28 H 1.09001 * 109.46792 * 60.00109 * 1 2 3 29 29 H 1.08995 * 109.47210 * 305.00164 * 4 2 1 30 30 H 1.08997 * 109.46954 * 185.00148 * 4 2 1 31 31 H 1.00902 * 111.00533 * 56.04323 * 5 4 2 32 32 H 1.09000 * 109.47033 * 300.00113 * 6 5 4 33 33 H 1.09001 * 109.46544 * 60.00058 * 6 5 4 34 34 H 1.09003 * 109.46685 * 305.00467 * 11 7 6 35 35 H 1.08996 * 109.46802 * 64.99886 * 11 7 6 36 36 H 0.96996 * 120.00202 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47153 * 54.99452 * 20 2 1 38 38 H 1.08992 * 109.47216 * 174.99961 * 20 2 1 39 39 H 1.08000 * 122.54091 * 0.02562 * 22 21 20 40 40 H 1.07997 * 122.54314 * 180.19699 * 23 22 21 41 41 H 1.07999 * 125.20453 * 179.78918 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6514 0.0374 -2.4456 6 6 2.1258 -0.6266 -3.6672 7 6 1.7024 0.1909 -4.8892 8 1 2.0614 1.2147 -4.7836 9 6 0.2341 0.1939 -4.9928 10 7 -0.8991 0.1981 -5.0726 11 6 2.3015 -0.4318 -6.1519 12 6 1.9874 0.4406 -7.3399 13 1 1.4172 1.3482 -7.2076 14 6 2.4281 0.0800 -8.5956 15 7 3.1220 -1.0255 -8.7567 16 14 2.0382 1.1611 -10.0683 17 1 2.6188 2.5116 -9.8585 18 1 2.6198 0.5566 -11.2937 19 1 0.5656 1.2738 -10.2235 20 6 2.0400 -0.7213 1.2492 21 6 1.6413 0.0570 2.4766 22 6 0.5041 -0.1057 3.1545 23 6 0.3569 0.7225 4.2539 24 6 1.3704 1.5641 4.4633 25 16 2.6009 1.3242 3.2296 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7198 -1.2952 30 1 3.1263 -0.7995 -1.2056 31 1 1.9882 0.9873 -2.3967 32 1 3.2128 -0.7038 -3.6400 33 1 1.6921 -1.6246 -3.7300 34 1 3.3823 -0.5155 -6.0381 35 1 1.8746 -1.4228 -6.3058 36 1 3.4317 -1.2794 -9.6401 37 1 1.6053 -1.7198 1.2952 38 1 3.1262 -0.7995 1.2056 39 1 -0.2437 -0.8307 2.8690 40 1 -0.5144 0.6923 4.8913 41 1 1.4269 2.2826 5.2676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568078157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:10 Heat of formation + Delta-G solvation = 14.935752 kcal Electronic energy + Delta-G solvation = -19776.087982 eV Core-core repulsion = 16780.906644 eV Total energy + Delta-G solvation = -2995.181338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.42626 -38.68954 -37.38619 -35.79177 -34.94967 -32.99944 -30.72760 -28.50208 -27.69495 -25.99092 -24.23044 -23.48958 -23.34638 -21.14947 -20.07561 -18.58300 -18.31528 -17.88937 -16.65029 -16.52978 -16.16480 -15.92334 -15.61290 -15.08273 -14.98367 -14.46519 -14.17715 -13.95884 -13.72752 -13.52019 -13.45911 -13.40688 -13.18794 -13.08086 -12.96972 -12.84718 -12.46398 -12.42335 -12.39020 -11.96898 -11.87643 -11.72402 -11.66169 -11.46169 -11.35055 -11.07871 -10.54510 -9.47087 -9.34097 -9.24266 -8.18992 -6.27164 0.14464 0.78482 1.15639 1.41173 1.43101 1.49983 1.89848 2.09471 2.16244 2.41918 3.16120 3.22104 3.38678 3.81661 3.99731 4.18899 4.27652 4.28059 4.31617 4.41340 4.60381 4.67551 4.75000 4.77242 4.81785 4.84565 4.91932 4.95151 5.04489 5.07307 5.19068 5.30072 5.42966 5.46338 5.47727 5.52445 5.63431 5.66825 5.79942 6.08484 6.23408 6.57721 6.84175 6.95541 7.41295 8.91674 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.035796 B = 0.002344 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.021580 B =11943.484420 C =12125.709611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 H 0.068 0.932 4 C 0.067 3.933 5 N -0.700 5.700 6 C 0.080 3.920 7 C 0.020 3.980 8 H 0.119 0.881 9 C 0.266 3.734 10 N -0.516 5.516 11 C 0.038 3.962 12 C -0.540 4.540 13 H 0.054 0.946 14 C 0.011 3.989 15 N -0.923 5.923 16 Si 0.948 3.052 17 H -0.262 1.262 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.042 4.042 21 C -0.171 4.171 22 C -0.151 4.151 23 C -0.143 4.143 24 C -0.223 4.223 25 S 0.077 5.923 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.348 0.652 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.000 1.000 36 H 0.264 0.736 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 2.483 27.499 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 H 0.087 0.913 4 C -0.062 4.062 5 N -0.332 5.332 6 C -0.050 4.050 7 C -0.002 4.002 8 H 0.137 0.863 9 C -0.050 4.050 10 N -0.194 5.194 11 C -0.001 4.001 12 C -0.578 4.578 13 H 0.072 0.928 14 C -0.188 4.188 15 N -0.563 5.563 16 Si 0.774 3.226 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.082 4.082 21 C -0.288 4.288 22 C -0.181 4.181 23 C -0.173 4.173 24 C -0.358 4.358 25 S 0.340 5.660 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.167 0.833 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.163 0.837 40 H 0.172 0.828 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.912 2.776 26.937 27.095 hybrid contribution -0.353 -0.045 -0.782 0.859 sum 0.558 2.730 26.155 26.304 Atomic orbital electron populations 1.21703 0.95060 1.01413 1.01002 1.21017 0.96338 0.99374 0.92534 0.91341 1.21990 0.98236 0.97526 0.88465 1.60410 1.64974 1.06411 1.01424 1.21843 0.99045 0.97193 0.86950 1.19191 0.80480 1.03326 0.97211 0.86308 1.29383 0.95334 0.90833 0.89446 1.80979 1.14771 1.11243 1.12399 1.18987 0.96487 0.94882 0.89749 1.21538 1.34214 1.08447 0.93570 0.92803 1.25720 0.95038 0.96366 1.01712 1.70023 1.37875 1.24495 1.23941 0.85756 0.78116 0.79734 0.79019 1.18688 1.20742 1.20774 1.20205 1.01636 0.97952 0.88399 1.24619 0.98891 1.02668 1.02605 1.20357 0.98206 1.02820 0.96668 1.20442 1.00642 0.96991 0.99202 1.25873 0.98389 1.06788 1.04765 1.84358 1.23403 1.34922 1.23349 0.93121 0.92919 0.93532 0.91206 0.93687 0.83316 0.91497 0.91363 0.94583 0.98199 0.92716 0.89099 0.89934 0.83693 0.82835 0.80316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 8.77 71.98 0.63 -2.03 16 2 C -0.07 -1.23 2.52 -10.79 -0.03 -1.26 16 3 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.07 1.23 5.08 86.31 0.44 1.67 16 5 N -0.70 -16.18 5.66 -513.88 -2.91 -19.09 16 6 C 0.08 2.16 5.05 86.30 0.44 2.60 16 7 C 0.02 0.69 2.35 -12.60 -0.03 0.66 16 8 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 9 C 0.27 10.97 13.67 89.44 1.22 12.19 16 10 N -0.52 -23.49 18.54 20.01 0.37 -23.12 16 11 C 0.04 1.73 4.42 29.85 0.13 1.86 16 12 C -0.54 -28.53 8.60 25.60 0.22 -28.31 16 13 H 0.05 2.82 7.59 -2.91 -0.02 2.79 16 14 C 0.01 0.58 5.46 84.65 0.46 1.04 16 15 N -0.92 -53.03 13.29 21.45 0.28 -52.74 16 16 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 C -0.04 -0.61 5.18 29.85 0.15 -0.45 16 21 C -0.17 -2.74 5.27 24.59 0.13 -2.61 16 22 C -0.15 -2.35 8.58 21.22 0.18 -2.17 16 23 C -0.14 -2.03 10.18 21.22 0.22 -1.82 16 24 C -0.22 -3.11 11.23 66.72 0.75 -2.37 16 25 S 0.08 1.20 23.33 -56.49 -1.32 -0.12 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.00 6.38 -2.39 -0.02 0.99 16 28 H 0.05 1.13 7.75 -2.39 -0.02 1.12 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.35 7.18 8.73 -89.69 -0.78 6.39 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 40 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -63.80 360.53 3.60 -60.20 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.23 Total: 10.39 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 4.92 Total: -20.99 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -2.25 Total: -94.95 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -1.32 Total: -0.12 kcal Total: -63.80 3.60 -60.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568078157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.133 kcal (2) G-P(sol) polarization free energy of solvation -63.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds