Wall clock time and date at job start Tue Mar 31 2020 06:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.43745 * 2 1 4 4 C 1.50804 * 109.43342 * 119.91288 * 2 1 3 5 5 C 1.39057 * 117.81347 * 288.54331 * 4 2 1 6 6 F 1.35100 * 119.77109 * 359.50444 * 5 4 2 7 7 C 1.38190 * 120.45435 * 179.52976 * 5 4 2 8 8 C 1.38227 * 119.68568 * 359.90525 * 7 5 4 9 9 C 1.37915 * 119.85436 * 0.26671 * 8 7 5 10 10 C 1.37637 * 122.35675 * 108.47344 * 4 2 1 11 11 C 1.50602 * 122.85461 * 1.51728 * 10 4 2 12 12 C 1.52790 * 110.85720 * 339.80643 * 11 10 4 13 13 N 1.46683 * 109.43820 * 240.08013 * 2 1 3 14 14 C 1.34784 * 121.33286 * 104.31602 * 13 2 1 15 15 O 1.21584 * 119.99592 * 174.79422 * 14 13 2 16 16 N 1.34771 * 119.99928 * 354.79979 * 14 13 2 17 17 C 1.46504 * 119.99810 * 184.97116 * 16 14 13 18 18 C 1.50705 * 109.47148 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99754 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99831 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00196 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99742 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47238 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46863 * 119.99821 * 22 20 18 25 25 H 1.48504 * 109.46961 * 239.99747 * 22 20 18 26 26 H 1.08999 * 109.46981 * 300.00352 * 1 2 3 27 27 H 1.08997 * 109.46851 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46714 * 60.00119 * 1 2 3 29 29 H 1.07995 * 120.15697 * 179.88432 * 7 5 4 30 30 H 1.07997 * 120.06815 * 180.24364 * 8 7 5 31 31 H 1.08002 * 119.68081 * 180.02562 * 9 8 7 32 32 H 1.08998 * 109.19891 * 100.15798 * 11 10 4 33 33 H 1.08997 * 109.20006 * 219.44655 * 11 10 4 34 34 H 1.08999 * 109.76746 * 167.08119 * 12 11 10 35 35 H 1.09003 * 109.76841 * 287.81016 * 12 11 10 36 36 H 0.97003 * 120.00674 * 4.96444 * 16 14 13 37 37 H 1.09004 * 109.46823 * 299.99434 * 17 16 14 38 38 H 1.08997 * 109.46995 * 59.99394 * 17 16 14 39 39 H 0.96993 * 119.99757 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0318 -0.7092 1.2327 5 6 1.8788 -0.0685 2.4573 6 9 1.3049 1.1535 2.5080 7 6 2.3103 -0.6729 3.6227 8 6 2.8959 -1.9238 3.5689 9 6 3.0508 -2.5576 2.3538 10 6 2.6243 -1.9503 1.1786 11 6 2.8528 -2.6911 -0.1126 12 6 1.9377 -2.1589 -1.2143 13 7 2.0182 -0.6899 -1.1989 14 6 2.5199 -0.0055 -2.2460 15 8 3.0044 -0.6036 -3.1872 16 7 2.4846 1.3417 -2.2497 17 6 2.9294 2.0829 -3.4326 18 6 2.7905 3.5621 -3.1801 19 1 2.4087 3.9148 -2.2335 20 6 3.1499 4.4651 -4.1581 21 7 3.6144 4.0356 -5.3111 22 14 2.9770 6.2986 -3.8455 23 1 2.4356 6.5191 -2.4804 24 1 4.3076 6.9480 -3.9606 25 1 2.0511 6.8864 -4.8468 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 2.1907 -0.1702 4.5710 30 1 3.2317 -2.4036 4.4763 31 1 3.5084 -3.5352 2.3151 32 1 3.8916 -2.5666 -0.4182 33 1 2.6498 -3.7508 0.0414 34 1 2.2677 -2.5365 -2.1821 35 1 0.9116 -2.4747 -1.0258 36 1 2.1646 1.8208 -1.4692 37 1 3.9734 1.8463 -3.6382 38 1 2.3174 1.8010 -4.2893 39 1 3.8675 4.6709 -5.9990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787371700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:14 Heat of formation + Delta-G solvation = -49.180781 kcal Electronic energy + Delta-G solvation = -23536.311874 eV Core-core repulsion = 19972.137059 eV Total energy + Delta-G solvation = -3564.174815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.03103 -40.54115 -38.84887 -36.20919 -34.38119 -33.31151 -32.18909 -31.59594 -29.71167 -28.46451 -26.89040 -24.24027 -23.79856 -22.57419 -21.97583 -20.90992 -18.87361 -18.13038 -17.23401 -16.50652 -16.34682 -15.97142 -15.74673 -15.38189 -15.05945 -14.60599 -14.36682 -14.19750 -13.75463 -13.69316 -13.16044 -13.09274 -12.88231 -12.54637 -12.35043 -12.06936 -11.97235 -11.85335 -11.70625 -11.49266 -11.11412 -10.89859 -10.89067 -10.72168 -10.27216 -9.41584 -9.32604 -8.93746 -8.81246 -8.71597 -8.46615 -7.74045 -6.13319 -4.19557 0.94884 0.99103 3.07695 3.26035 3.33223 3.33423 3.37047 3.84391 4.04141 4.32001 4.34211 4.47313 4.63866 4.70764 4.87353 4.99195 5.09430 5.14746 5.22537 5.23033 5.30309 5.42258 5.56237 5.70991 5.75083 5.79518 5.88142 5.96507 5.99377 6.11561 6.17198 6.29041 6.68057 6.69953 7.13835 7.51902 7.55662 7.58961 7.86366 8.03738 8.76964 8.90098 9.31227 9.48930 10.97003 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.004349 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.622063 B = 6437.395707 C = 7346.178988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.098 0.902 4 C -0.118 4.118 5 C 0.107 3.893 6 F -0.135 7.135 7 C -0.160 4.160 8 C -0.092 4.092 9 C -0.133 4.133 10 C -0.035 4.035 11 C -0.100 4.100 12 C 0.130 3.870 13 N -0.633 5.633 14 C 0.702 3.298 15 O -0.595 6.595 16 N -0.728 5.728 17 C 0.266 3.734 18 C -0.541 4.541 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.385 0.615 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 -13.359 18.393 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.077 3.923 3 H 0.116 0.884 4 C -0.120 4.120 5 C 0.087 3.913 6 F -0.113 7.113 7 C -0.179 4.179 8 C -0.110 4.110 9 C -0.151 4.151 10 C -0.036 4.036 11 C -0.138 4.138 12 C 0.006 3.994 13 N -0.372 5.372 14 C 0.404 3.596 15 O -0.474 6.474 16 N -0.381 5.381 17 C 0.145 3.855 18 C -0.579 4.579 19 H 0.080 0.920 20 C -0.139 4.139 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.220 0.780 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.312 -13.624 17.417 22.529 hybrid contribution -0.257 1.526 0.683 1.691 sum -4.568 -12.098 18.101 22.246 Atomic orbital electron populations 1.22182 0.93795 1.02694 1.03159 1.19751 0.94543 0.95928 0.82084 0.88413 1.19837 1.02441 0.95912 0.93781 1.17596 0.98205 0.81582 0.93884 1.91507 1.82036 1.40599 1.97178 1.21050 1.02494 0.97029 0.97292 1.20898 0.97839 0.94107 0.98155 1.21241 1.01338 1.00742 0.91803 1.19437 0.95594 0.92845 0.95682 1.20932 1.01983 0.99043 0.91793 1.21323 0.98725 0.79444 0.99924 1.47294 1.67432 1.06308 1.16168 1.15965 0.79036 0.82740 0.81873 1.90860 1.51810 1.68678 1.36031 1.45886 1.68334 1.03355 1.20563 1.19009 0.95495 0.89479 0.81526 1.21257 1.44950 0.90440 1.01259 0.91955 1.24931 0.94748 0.99472 0.94791 1.69987 1.42420 1.34791 1.05097 0.86372 0.77857 0.84409 0.78345 1.19627 1.20810 1.20794 0.91309 0.92074 0.91034 0.84713 0.85092 0.85386 0.89465 0.89437 0.88092 0.91488 0.78045 0.95637 0.95717 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.23 37.16 0.34 -1.61 16 2 C 0.18 2.56 2.31 -68.93 -0.16 2.40 16 3 H 0.10 1.48 5.89 -51.93 -0.31 1.18 16 4 C -0.12 -1.49 5.17 -104.49 -0.54 -2.03 16 5 C 0.11 1.28 7.01 -39.30 -0.28 1.01 16 6 F -0.13 -1.72 15.66 2.25 0.04 -1.69 16 7 C -0.16 -1.55 10.03 -39.60 -0.40 -1.95 16 8 C -0.09 -0.77 10.04 -39.70 -0.40 -1.17 16 9 C -0.13 -1.21 9.59 -39.42 -0.38 -1.58 16 10 C -0.04 -0.40 5.76 -104.61 -0.60 -1.00 16 11 C -0.10 -1.06 5.86 -28.04 -0.16 -1.23 16 12 C 0.13 1.69 6.29 -3.81 -0.02 1.67 16 13 N -0.63 -10.29 2.58 -172.55 -0.44 -10.73 16 14 C 0.70 15.06 8.32 -86.92 -0.72 14.34 16 15 O -0.59 -14.95 15.85 5.29 0.08 -14.87 16 16 N -0.73 -16.33 5.45 -66.41 -0.36 -16.69 16 17 C 0.27 7.26 5.43 -5.19 -0.03 7.23 16 18 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 19 H 0.06 1.63 7.60 -52.49 -0.40 1.24 16 20 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 22 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.07 0.77 7.08 -51.93 -0.37 0.40 16 27 H 0.06 0.68 7.37 -51.93 -0.38 0.30 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 31 H 0.13 0.86 8.05 -52.49 -0.42 0.44 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.10 1.46 7.09 -51.93 -0.37 1.09 16 35 H 0.07 0.74 7.36 -51.93 -0.38 0.36 16 36 H 0.39 7.71 5.98 -40.82 -0.24 7.46 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 324.98 15.07 4.90 4.90 Total: -1.00 -32.94 324.98 -8.80 -41.74 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -4.96 Total: 4.36 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -3.76 Total: 2.47 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.07 Total: -53.07 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.08 Total: -14.87 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.94 -8.80 -41.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.440 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds