Wall clock time and date at job start Tue Mar 31 2020 06:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.43745 * 2 1 4 4 C 1.50804 * 109.43342 * 119.91288 * 2 1 3 5 5 C 1.39057 * 117.81347 * 288.54331 * 4 2 1 6 6 F 1.35100 * 119.77109 * 359.50444 * 5 4 2 7 7 C 1.38190 * 120.45435 * 179.52976 * 5 4 2 8 8 C 1.38227 * 119.68568 * 359.90525 * 7 5 4 9 9 C 1.37915 * 119.85436 * 0.26671 * 8 7 5 10 10 C 1.37637 * 122.35675 * 108.47344 * 4 2 1 11 11 C 1.50602 * 122.85461 * 1.51728 * 10 4 2 12 12 C 1.52790 * 110.85720 * 339.80643 * 11 10 4 13 13 N 1.46683 * 109.43820 * 240.08013 * 2 1 3 14 14 C 1.34784 * 121.33286 * 104.31602 * 13 2 1 15 15 O 1.21584 * 119.99592 * 174.79422 * 14 13 2 16 16 N 1.34771 * 119.99928 * 354.79979 * 14 13 2 17 17 C 1.46504 * 119.99810 * 184.97116 * 16 14 13 18 18 C 1.50705 * 109.47148 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99754 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99831 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00196 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99742 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47238 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46863 * 119.99821 * 22 20 18 25 25 H 1.48504 * 109.46961 * 239.99747 * 22 20 18 26 26 H 1.08999 * 109.46981 * 300.00352 * 1 2 3 27 27 H 1.08997 * 109.46851 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46714 * 60.00119 * 1 2 3 29 29 H 1.07995 * 120.15697 * 179.88432 * 7 5 4 30 30 H 1.07997 * 120.06815 * 180.24364 * 8 7 5 31 31 H 1.08002 * 119.68081 * 180.02562 * 9 8 7 32 32 H 1.08998 * 109.19891 * 100.15798 * 11 10 4 33 33 H 1.08997 * 109.20006 * 219.44655 * 11 10 4 34 34 H 1.08999 * 109.76746 * 167.08119 * 12 11 10 35 35 H 1.09003 * 109.76841 * 287.81016 * 12 11 10 36 36 H 0.97003 * 120.00674 * 4.96444 * 16 14 13 37 37 H 1.09004 * 109.46823 * 299.99434 * 17 16 14 38 38 H 1.08997 * 109.46995 * 59.99394 * 17 16 14 39 39 H 0.96993 * 119.99757 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0318 -0.7092 1.2327 5 6 1.8788 -0.0685 2.4573 6 9 1.3049 1.1535 2.5080 7 6 2.3103 -0.6729 3.6227 8 6 2.8959 -1.9238 3.5689 9 6 3.0508 -2.5576 2.3538 10 6 2.6243 -1.9503 1.1786 11 6 2.8528 -2.6911 -0.1126 12 6 1.9377 -2.1589 -1.2143 13 7 2.0182 -0.6899 -1.1989 14 6 2.5199 -0.0055 -2.2460 15 8 3.0044 -0.6036 -3.1872 16 7 2.4846 1.3417 -2.2497 17 6 2.9294 2.0829 -3.4326 18 6 2.7905 3.5621 -3.1801 19 1 2.4087 3.9148 -2.2335 20 6 3.1499 4.4651 -4.1581 21 7 3.6144 4.0356 -5.3111 22 14 2.9770 6.2986 -3.8455 23 1 2.4356 6.5191 -2.4804 24 1 4.3076 6.9480 -3.9606 25 1 2.0511 6.8864 -4.8468 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 2.1907 -0.1702 4.5710 30 1 3.2317 -2.4036 4.4763 31 1 3.5084 -3.5352 2.3151 32 1 3.8916 -2.5666 -0.4182 33 1 2.6498 -3.7508 0.0414 34 1 2.2677 -2.5365 -2.1821 35 1 0.9116 -2.4747 -1.0258 36 1 2.1646 1.8208 -1.4692 37 1 3.9734 1.8463 -3.6382 38 1 2.3174 1.8010 -4.2893 39 1 3.8675 4.6709 -5.9990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787371700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:13 Heat of formation + Delta-G solvation = -69.700094 kcal Electronic energy + Delta-G solvation = -23537.201659 eV Core-core repulsion = 19972.137059 eV Total energy + Delta-G solvation = -3565.064600 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.93025 -41.76073 -40.13513 -37.45523 -36.29000 -34.69057 -33.91642 -32.71912 -30.58602 -29.79300 -28.64908 -25.51732 -24.81457 -24.27532 -22.90049 -22.27525 -20.52126 -19.33096 -18.32484 -18.08424 -17.51002 -17.25871 -16.77713 -16.70206 -16.44382 -16.30891 -15.72941 -15.18145 -15.03467 -14.87127 -14.66060 -14.20420 -14.06032 -13.96335 -13.83023 -13.33797 -13.21529 -12.99477 -12.84759 -12.76700 -12.74905 -12.36620 -12.25796 -12.11470 -11.67122 -11.47172 -11.22200 -10.83523 -10.13906 -9.75346 -9.60631 -9.46132 -8.30444 -6.47031 0.16694 0.21677 1.41433 1.43183 1.55935 1.66254 2.12625 2.36557 2.57381 3.03915 3.04336 3.24788 3.37183 3.64617 3.88849 3.95010 4.05656 4.16369 4.28184 4.31781 4.44617 4.59602 4.64659 4.71604 4.81259 4.84106 5.01873 5.03985 5.09766 5.17204 5.19747 5.24391 5.38239 5.43793 5.47550 5.50304 5.68022 5.82088 5.93521 6.07546 6.63656 7.08194 7.22857 7.61186 8.82150 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.004349 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.622063 B = 6437.395707 C = 7346.178988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 H 0.079 0.921 4 C -0.138 4.138 5 C 0.085 3.915 6 F -0.147 7.147 7 C -0.158 4.158 8 C -0.083 4.083 9 C -0.126 4.126 10 C -0.050 4.050 11 C -0.091 4.091 12 C 0.121 3.879 13 N -0.622 5.622 14 C 0.699 3.301 15 O -0.639 6.639 16 N -0.726 5.726 17 C 0.286 3.714 18 C -0.556 4.556 19 H 0.078 0.922 20 C 0.007 3.993 21 N -0.928 5.928 22 Si 0.985 3.015 23 H -0.256 1.256 24 H -0.277 1.277 25 H -0.276 1.276 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.155 0.845 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.398 0.602 37 H -0.014 1.014 38 H -0.011 1.011 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.234 -13.919 21.708 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.075 3.925 3 H 0.097 0.903 4 C -0.139 4.139 5 C 0.066 3.934 6 F -0.125 7.125 7 C -0.177 4.177 8 C -0.101 4.101 9 C -0.144 4.144 10 C -0.050 4.050 11 C -0.129 4.129 12 C -0.001 4.001 13 N -0.360 5.360 14 C 0.400 3.600 15 O -0.521 6.521 16 N -0.381 5.381 17 C 0.163 3.837 18 C -0.594 4.594 19 H 0.096 0.904 20 C -0.192 4.192 21 N -0.567 5.567 22 Si 0.808 3.192 23 H -0.180 1.180 24 H -0.202 1.202 25 H -0.201 1.201 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.172 0.828 30 H 0.185 0.815 31 H 0.176 0.824 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.234 0.766 37 H 0.004 0.996 38 H 0.007 0.993 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.850 -14.221 20.810 25.668 hybrid contribution -0.089 1.570 -0.275 1.596 sum -4.939 -12.651 20.536 24.620 Atomic orbital electron populations 1.22111 0.92347 1.03560 1.02967 1.19854 0.95675 0.95090 0.81915 0.90306 1.19736 1.04336 0.96840 0.93024 1.17840 0.99482 0.81558 0.94561 1.91473 1.82428 1.41374 1.97251 1.21385 1.01531 0.97552 0.97187 1.21348 0.96123 0.93284 0.99314 1.21579 1.00082 1.01704 0.91011 1.19576 0.96182 0.92593 0.96690 1.20887 1.00274 1.01104 0.90615 1.21636 1.01010 0.77199 1.00295 1.47275 1.65732 1.07664 1.15294 1.16114 0.78915 0.82305 0.82624 1.90818 1.53741 1.69377 1.38208 1.45533 1.68792 1.04006 1.19729 1.18436 0.92472 0.90509 0.82263 1.21579 1.45279 0.90439 1.02121 0.90414 1.26027 0.93808 1.05204 0.94209 1.70139 1.43215 1.36997 1.06320 0.85112 0.78035 0.77132 0.78939 1.17991 1.20241 1.20102 0.90171 0.90653 0.92448 0.82765 0.81535 0.82438 0.90958 0.85571 0.89984 0.88869 0.76559 0.99596 0.99325 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.23 71.98 0.66 -2.96 16 2 C 0.18 5.04 2.31 44.25 0.10 5.15 16 3 H 0.08 2.47 5.89 -2.39 -0.01 2.46 16 4 C -0.14 -3.31 5.17 -19.78 -0.10 -3.41 16 5 C 0.09 1.91 7.01 22.45 0.16 2.07 16 6 F -0.15 -3.65 15.66 44.97 0.70 -2.95 16 7 C -0.16 -2.57 10.03 22.26 0.22 -2.34 16 8 C -0.08 -1.02 10.04 22.19 0.22 -0.80 16 9 C -0.13 -1.76 9.59 22.37 0.21 -1.55 16 10 C -0.05 -1.01 5.76 -19.86 -0.11 -1.12 16 11 C -0.09 -1.78 5.86 29.75 0.17 -1.60 16 12 C 0.12 3.11 6.29 86.19 0.54 3.65 16 13 N -0.62 -20.69 2.58 -818.09 -2.11 -22.80 16 14 C 0.70 31.57 8.32 179.05 1.49 33.06 16 15 O -0.64 -34.15 15.85 -3.98 -0.06 -34.21 16 16 N -0.73 -34.35 5.45 -482.28 -2.63 -36.98 16 17 C 0.29 16.61 5.43 85.63 0.47 17.07 16 18 C -0.56 -31.64 9.28 25.60 0.24 -31.41 16 19 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 20 C 0.01 0.42 5.46 84.65 0.46 0.88 16 21 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 22 Si 0.98 43.49 29.54 68.60 2.03 45.52 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 26 H 0.08 1.74 7.08 -2.39 -0.02 1.72 16 27 H 0.07 1.57 7.37 -2.39 -0.02 1.55 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 31 H 0.16 1.27 8.05 -2.91 -0.02 1.25 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.13 1.48 8.11 -2.39 -0.02 1.46 16 34 H 0.08 2.44 7.09 -2.39 -0.02 2.42 16 35 H 0.09 1.91 7.36 -2.39 -0.02 1.90 16 36 H 0.40 16.61 5.98 -92.71 -0.55 16.05 16 37 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -75.60 324.98 3.48 -72.12 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.52 Total: 19.35 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 4.74 Total: 16.67 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -4.45 Total: -116.50 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.06 Total: -34.21 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.70 Total: -2.95 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -75.60 3.48 -72.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.420 kcal (2) G-P(sol) polarization free energy of solvation -75.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds